Array 1 1-381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000107.1 Thiohalocapsa sp. ML1 contig00314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 1 36 100.0 34 .................................... CGACGGCGCGATCCACATGCGGGTTTTGCCTTCC 71 36 100.0 34 .................................... GCCGAGCGGGAGCGCGTCCCGCCGGTGCTTCGAC 141 36 100.0 34 .................................... CTCCGAATGCGATCACTGCCACCGCAGTGCCGAT 211 36 97.2 31 ...............T.................... GCCGAAGCAGCGCCTTAAAGCGCCGCGGCAG 278 36 97.2 32 ............T....................... AGATAGCGCTGGATGCATCGCTCTACCCATTC 346 36 88.9 0 ........................T....G....GA | ========== ====== ====== ====== ==================================== ================================== ================== 6 36 97.2 33 GTCCGACCGCTGCCCCGAATTGAAGGGGATTGAGAC # Left flank : | # Right flank : AAGCAAGTCTTTGGCCCCGGAAGGCGCGCTGCGCCCGTTGGCGACCCGCGGGCCGGCTTCGGTGGGATGCGGGCCGGGCTCGACGTGCCCGGCGCGGGATGTGTCGCCCATCACGCGGGGGCACCGTGCGGCATGAGTCGCGGCTCGTGGTGCTGCCTGACGAGGGGGCTCGGCATTGGGGGTGCTGATGAACGGCAGGTCCCGCGGCGTGGTGGCGCAACGGCCGGCGACGTGGGTCCTGGCGGTGGCGGGCGAGCGCGGCACCGCCGACATCCGGCGGGCGTCACGGGCAGTGCGCGGCCCTGCGTTGCCGTCCGCGGAGCGCGGCGCCAGCGCGGCGACCGGGCGACCGCCCTGGGGCAGGTGCGTAGCCGCGCGTCCGGCTTCGGCCACTAGGCCGGTGCGCCGGGCATGACCTGTCTGCGCAAGCCCCGGGCGGACTGCGGACTCTCGGCTCGCTGGCGGCTGCGCGGGCTATCGCCGGCGGATCTGGGCGACAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCGCTGCCCCGAATTGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 36-1687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000112.1 Thiohalocapsa sp. ML1 contig00459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 36 37 100.0 30 ..................................... GTCGGTGGCGTAGGTGTCAAACCAAGCACG 103 37 100.0 34 ..................................... CACGTCCGCATTCCCGGACAACGTACCGCACAGA 174 37 100.0 34 ..................................... TACCGCGGGAACGGCGCGTGCGCTTGGCCTTGGC 245 37 100.0 31 ..................................... GCCGTCAGCGCTGGTTGCGAGCAGCGTATAC 313 37 100.0 32 ..................................... GTGTCCACGTGTACGACTTCCGCATCGTACCC 382 37 100.0 35 ..................................... ATAAGCACCGCCATCGTCGTACCCGCCCGCGTTAA 454 37 100.0 35 ..................................... CGTTGCGACCGGACTGTACCCCGTGCCGACGCTGG 526 37 100.0 34 ..................................... CAGGCGGACCCGGCGCAGTTCCGGCCCCATGTGG 597 37 100.0 32 ..................................... TCGTCGAGGTTGACGCCGTAATACTCGGTCTC 666 37 97.3 32 ...................A................. AAAGCACTGCACCGGCTTTCCGGGCTGCATAC 735 37 100.0 34 ..................................... ATGGCGACGCTGATCGGTTCGCCGTCGTGGGTTC 806 37 100.0 33 ..................................... ACGCGTCGTCTCGACGTTTGCGTGCGTGTGGCC 876 37 100.0 34 ..................................... GCTGTTTACCTGCTGTTGTGATTGGAAAGGCTAG 947 37 100.0 34 ..................................... GCGCCGTTACGTCCTAATGGGATTACGTCAGTCG 1018 37 100.0 35 ..................................... GGCGGCGGCGTGTTCCTCGTCCACCGAGTAGCGAA 1090 37 100.0 35 ..................................... TGCCGGCTGAACGATCTTATACCGGTCGGACATGA 1162 37 100.0 34 ..................................... GCTGTTGTTTGATTGTGGGGCTAGCTTACTAGCG 1233 37 100.0 34 ..................................... GCGCGTCGGCAAGGGTTCCAACCCCGCGGAACCA A [1254] 1305 37 100.0 33 ..................................... CGTCAAACGTCGCGCTATCTGACAACGCTTGGC 1375 37 100.0 35 ..................................... GGTAACCCCTTGCAGCAACCCGTACGCGGTACCGA 1447 37 100.0 30 ..................................... AAAAGAAGGCATACGCATCGCTCTTACTGA 1514 37 100.0 34 ..................................... CGCGACAGGATAAAGAATCCGTAAGCTTCGTGCA 1585 37 100.0 33 ..................................... CGCGAAGCGACGCGATAGTCCCCTTCGCCCGTC 1655 33 89.2 0 .........................-........--- | ========== ====== ====== ====== ===================================== =================================== ================== 24 37 99.4 33 CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Left flank : TTGGCGGAGCGGGCTCAGTTGGGCTGTGCCCGGCCC # Right flank : | # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 1214-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000116.1 Thiohalocapsa sp. ML1 contig00572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1213 37 100.0 34 ..................................... CTCGTAGCCGTCAGCGATCACGACGATGCGGACC 1142 37 100.0 34 ..................................... ACGCGTCCGCCGCTGATATCAAAAAGGAACTGGG 1071 37 100.0 35 ..................................... ATGGCTCGCACCTCGGCGGCGGTTGGGGGGGTGCG 999 37 100.0 34 ..................................... ATGTAGGAGATCTGCTTTTGGGTCGGGGCGTTGC 928 37 100.0 34 ..................................... CAAGACGATCGATCGCCTTCATGCGGCATAACAA 857 37 100.0 33 ..................................... GCGGGAACGATGCTGTTCCCGCGAAGGGCAAAA 787 37 100.0 34 ..................................... CTCGCACCTCGGCGGCGGTTGGGGGGGTGTAGTC 716 37 100.0 33 ..................................... TCTTGGTCTGCTGCATATTCCGGTGACTCGGAG 646 37 100.0 33 ..................................... CGCGGAGCATCTCCCCGACCGTGAGGTTTAGGA 576 37 100.0 36 ..................................... CTCTTGCTCGTCGGCGAAATCGACTTGGGCGAAGCC 503 37 100.0 32 ..................................... CGTCCCTGCGACCCGACCGAGCGCTGTTATCT 434 37 100.0 34 ..................................... GTGCCGCGCTTGACGAGGCGGGCGCTGCGGGCGG 363 37 100.0 35 ..................................... GCTCCGCACGTATGGCCTGCCTGTTCCCAGGCTGA 291 37 100.0 36 ..................................... TGCGCCGAAAGAGACAGCATCCAGGAACCACTCCGC 218 37 100.0 34 ..................................... ATAGCTCGTTCATCGCTTGTTCCTCGTCGGCCCG 147 37 100.0 33 ..................................... CGCCCGTCGCGCAGCAGAATCCGCACGTCGTAA 77 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 100.0 34 CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Left flank : AGTCGAAGACGCGGAAACCGGGC # Right flank : CCGCCGACGCCGCCGTGGTCCCCGCAGTGCTCCCGCCGAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 33-1058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000120.1 Thiohalocapsa sp. ML1 contig00610, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 33 37 100.0 31 ..................................... TCGGTTGGTGCCGTCCCTGGCGGTGGTGTCC G [58] 102 37 100.0 33 ..................................... ACGCGCCGTGCCAATAAGGCAATGCGCGTGCAT 172 37 100.0 34 ..................................... AGAAGCCCGCAGCGTGGTAACTGCGGGCAAAGCC 243 37 100.0 34 ..................................... TCGGCAAAGGCGGTGGTCTTGTGGTCGGTCATCT 314 37 100.0 33 ..................................... ACAACGGCCAACGTGTTTGCACACACGACGCGG 384 37 100.0 35 ..................................... CGCGCCGTGCCCAATAAGGGCAATGCGCTGCATGT 456 37 100.0 34 ..................................... TCCCGAAGAGATCCAGGTCCATCAAGATGTGGCG 527 37 100.0 34 ..................................... CTCAAACATGCGAAATACCTCGTCAGAAGTTGCG 598 37 100.0 32 ..................................... GCGACGTTCACCGCCGATGGGTCCGGGGCTCC 667 37 100.0 34 ..................................... TAGTCAAGCCTCCCGATGCCCAAAGGCGCGCAGA 738 37 100.0 34 ..................................... CGCGCGGGCCGCAGGCGAACAGTGCAGACCGGAC 809 37 100.0 35 ..................................... GGATCTTCCACCTGCCAGTGGTACGTGAAGCCATC 881 37 100.0 33 ..................................... CCCAAGGGCGAAGTGTGGACGCTGCCCCATTGC 951 37 100.0 34 ..................................... GCGAAGGTGTACCGCGGTGACCTGGAGCTGTGCG 1022 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 15 37 100.0 34 CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Left flank : ACAGCTGCGCGAGCTCGTCACCGCGCGCCAGCC # Right flank : CCGTGTCCTCCTCGTCGAGCATCGTGCTCAGCTCACGCCGAACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 28-626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000132.1 Thiohalocapsa sp. ML1 contig00789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 28 37 100.0 33 ..................................... CGAAAGGTTACGCTCGGCTCGGCTCGGCTCGGC 98 37 100.0 33 ..................................... TGCTACCCGTTGCGCGGTACAAGCCAGCGTTGA 168 37 100.0 33 ..................................... CTCGGCTCGGCTCGGGAACCAGGGCCAGCCGAA 238 37 100.0 34 ..................................... GTTGCCCTTGATCCGACCCACGCACATGGTCTAC 309 37 100.0 34 ..................................... CCTGATGTCCAATTCATGTGCCATTGTGTGTTAC 380 37 100.0 33 ..................................... GGAACGGCGCGTGCGCTTGGCCTTGGCCTTGCG 450 37 100.0 34 ..................................... CTTGCCCATCGCGCGACAGGATAAAGAATCCGTA 521 37 100.0 32 ..................................... GCATCAGTCGCGCTGCTTAGCAGCCAGGGTCA 590 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 9 37 100.0 33 CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Left flank : GCCCCATGGAAGCCCCACTCGGGGTTTC # Right flank : TCCGTTGCCGCAATGAACCGCGCAGCATCGAACCCGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 558-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000135.1 Thiohalocapsa sp. ML1 contig00836, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 557 37 100.0 32 ..................................... CTCCTGTTAGGAGGCATAGGGCTACTCCTGTC 488 37 100.0 34 ..................................... AAACCCTCGTCGAAACGAGGGAAGCATCAACAAG 417 37 97.3 34 G.................................... CTCGGCGTTGTAGCCGATTTCCACCATCTTCTGC 346 37 100.0 32 ..................................... GCACGGCGAACACTTCGTATGGCACGCCGGTC 277 37 97.3 33 A.................................... CGAAGGCTTCGATCTTGTGGGGGAGGTCCTTGG 207 37 100.0 31 ..................................... AGCTCCCCGGCCGCGCATTGCGGTATTCGCG 139 37 100.0 34 ..................................... AAAGACGCGACGGCTTCCAAGCCGAAATACTCAC 68 37 94.6 0 A.....T.............................. | G [39] ========== ====== ====== ====== ===================================== ================================== ================== 8 37 98.7 33 CGTCCGACCGCTGCCCCGAATTGAAGGGGATTGAGAC # Left flank : GTTGCCATCACACGCGATGCACCCAC # Right flank : CATCCAGCGAGGAGCCACAGGCCGGCAAGGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCCGACCGCTGCCCCGAATTGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 690-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000017.1 Thiohalocapsa sp. ML1 contig00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 689 36 100.0 34 .................................... TCTCTCACTCATAGCGACTTACCTCAAAAGTTCG 619 36 100.0 33 .................................... ACTCAATGAAAGAGTGCCAATACGATTGTGTCT 550 36 100.0 33 .................................... AGTGCGGGGCTGGGCGGCCGACTGGGTCGGCGG 481 36 100.0 31 .................................... GGGTCCCATCGTTCAGGGTAATGGGGCCGTT 414 36 100.0 33 .................................... AGACGCCTCAGCACACTGTTCCAGGAGTTGTGC 345 36 100.0 33 .................................... CGTGTCGGCTCTCCCCTTTCTCCATACTTTTCT 276 36 100.0 35 .................................... CGGGTGGTGGGGGATTGTTCGGGTGGTCGCGTTAT 205 36 100.0 32 .................................... AACAACGCTCGCGCATGTACCAGTGAAAAGTG 137 36 100.0 33 .................................... TGATTGAGACACCCGATGCACGAGTAACGTCAT 68 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 10 36 100.0 33 GTCCGACCGCTGCCCCGAATTGAAGGGGATTGAGAC # Left flank : CGCCGCGCACAGCAGCTTTCTCGCCGCCCACCGCGGCATCCCCCAGGGCGCCATCCTCTCGCCGCTGTTCTGCAACCTCTACCTGCACGCCTTCGACAGCGCCCTGGATGCCGCCAAGGTCCCCTTCGTGCGCTATGCCGACGACTTCCTGCTGTTCACCGCCGACAAGGCCGACGCCGAGCGCGCACTCGACTTCGCCCGCCGACAGCTCGAAGCCCTCGATCTCCAGCTCAACGCCGAGAAGACCCGCGTCGTACAGAGCAGCCCGGAGGTCGTCTTCCTCGGGCAGTCCCTGCCGCGGCCAAGCCAAACCCCGGGCTTGCGTCCAGCGCGTCAGCGGCTACAATCAAAGCCGTTGCGACCGCGCCGAAACGGCCCGATCGCTGTACAAAAGCACAGTACCTAGGCCCGCAACGAAAGTTAACTTTTTCGGAAACTTCTCGTGCTCGCTCGGGTCGCCGCAACTCACTGTTCTGCAATCGGAAAGTATTTGTCAAGCT # Right flank : CTGTGTCGCTTGTTTGTTTTGCAATAGTGCGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCGCTGCCCCGAATTGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 88422-81181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000018.1 Thiohalocapsa sp. ML1 contig00018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 88421 36 100.0 38 .................................... GCCCACATTGAGCGGCGCGGAGAAGCCGGCGGGCAGAT 88347 36 100.0 37 .................................... CGTTGGCGCGGCGGGCGCATCGTCGGCACCGCCGCGG 88274 36 100.0 37 .................................... ATCGACTTCCGCAGCGTGATCGTTGGCGCGGCTGCGC 88201 36 100.0 37 .................................... TACCGCGCCGATGCTTTTGCGCAAACGTGGGACCCTG 88128 36 100.0 36 .................................... CGCCCGACGGCCAAAGGCGGCCTGCGCCGCGGCGCC 88056 36 100.0 37 .................................... TGACAACCAGAAAGATCGTGCGCGAGCATTTCGAGTC 87983 36 100.0 38 .................................... TTGGGTTTGGATGGCGTTGACGTTTTGCAGCAGGAACA 87909 36 100.0 36 .................................... AGGCCGCAGTAATCGCCCACGCCCGCGGCCATCTGC 87837 36 100.0 39 .................................... GGCGAGCAGCTCGCCTTTTGGCGCGGCAAGCTCGCCGAC 87762 36 100.0 36 .................................... ACGCCGACGCGCGCCATCCAGTTCGACGACCGGCGG 87690 36 100.0 36 .................................... GCACCTGGCGGGACACCGTTGCGCCTGGCGCATAGT 87618 36 100.0 36 .................................... TCGATGATGCCGGCGTCGGCGTCGGCCAGCTCGGCG 87546 36 100.0 36 .................................... GTCTGGAGCGCCTTCGGGCCGGTCCCGGCCTGCACC 87474 36 100.0 37 .................................... GCCGGCGTGGACATCGACGACGACGACTGGCGCGCCT 87401 36 100.0 36 .................................... GAGAGCTCAAGCCCGTTCCGCGGGCGCATCGCCGCC 87329 36 100.0 36 .................................... GACGGTCGGGTGGCGGCTGCCGGCGCGCTCGGACTT 87257 36 100.0 36 .................................... TCTCACTGCGGAGTCGGACACGGCCGCGCTCGCGGC 87185 36 100.0 36 .................................... AGGCGCCGCTGTCCCACAGCCACACCCACTTATTGC 87113 36 100.0 35 .................................... AAGTCCAGCCCCGGCGACGACACACCATCCACCCA 87042 36 100.0 36 .................................... GATGTGGCGGTCCATACGTGCACGCTGCGCCGCCCG 86970 36 100.0 40 .................................... GGCGCTTGAGATCGGGTGGCACGAAAACGCTAGCGATGCC 86894 36 100.0 36 .................................... AGGTGGGTGCGGCCCTCTTGGATGCGCTGGGCATAC 86822 36 100.0 36 .................................... AAGAGTTATTTTTCATATCCTCAAGGTACTCTGGGT 86750 36 100.0 38 .................................... CAAATGAAAAAATCACCGTCCAAAATCGCGAACGACAT 86676 36 100.0 36 .................................... GGCGTCGTGCGCGGCGAAGGTGGCACGGCGCAGGAT 86604 36 100.0 36 .................................... TCGTATTCGCAATCGCGCAGAATGCGATGCCGAGAT 86532 36 100.0 35 .................................... GAGAGCGGGCTCCGCTTCCAGCGCCAGCGCGTGCA 86461 36 100.0 38 .................................... TCGATGGGCGGCGCGGTCGAGGAGGTCGAGCAGTCCGC 86387 36 100.0 37 .................................... GAAAATATCGAGATCTCCGAAGACCCCGCCTTCGCCG 86314 36 100.0 37 .................................... AGGCCGGAGACGGACAGCCGGTCGATGTCGTCGAGGC 86241 36 100.0 37 .................................... TCGGGCGCGCGCGCAAGTGCCGCACCGCGTCTAATGT 86168 36 100.0 38 .................................... TTCACGCTGTATCACGAGGCGTTGGGCGCCGTGTCGTG 86094 36 100.0 37 .................................... GAAAGTAATGCTGCCGGCAGTCGGCGACAGGCCCGTG 86021 36 100.0 37 .................................... TGCGTGCCGCGGAAACGCGGTTCAGCCACAGCTCGCC 85948 36 100.0 37 .................................... GGCGGCGCGAACAGGCTGGCGTAGCGCGGGACGATAT 85875 36 100.0 35 .................................... CTGTCCAAGCTGGACATCGAGCCGATGAAGGCCTT 85804 36 100.0 37 .................................... GTGTAGCTGTCGGACAGCCGCGCGAGGATCTCGGCGC 85731 36 100.0 36 .................................... TGCTCGGGCGGCTGCGGGTGGGCGATCTGCGCGTGC 85659 36 100.0 36 .................................... TCGGCGGTGTCCTCCATGCCGCCTGCCACTTCGACG 85587 36 100.0 37 .................................... CACGCAGCGTGCCAACTTCGCGCTGTTCCACGTGGAA 85514 36 100.0 36 .................................... GCGGACCTGCCGGCGCGGCAGGCCCGCATCCTCAAC 85442 36 100.0 35 .................................... CGCGGGATCGAGCCTGCTGGGCAAAAACTTTTACC 85371 36 100.0 37 .................................... GGCGGCCCATGTCGGCTCGCTGTCCGACGCCGCCGCA 85298 36 100.0 40 .................................... CCAGGTGCCGTCCGCGGGTACCGGCGTCGAGGTCAGAGCG 85222 36 100.0 35 .................................... CCGAGATAGGTGGAGTAGGTCAGCCCCGTCTCGGG 85151 36 100.0 36 .................................... CGGGAAGCCGAGTTCGCATGCAACCACTGCGGCTCG 85079 36 100.0 37 .................................... GCCGCTATGTCGCCGCTGGAGCAGCAAGCCGTCGCCG 85006 36 100.0 39 .................................... GAGCGTCGATCCCGACCGGATCGGTCCGCGGAGCTGTTT 84931 36 100.0 37 .................................... GAGGACTTCGGCTCGCGCCTCGCGGAGACGCTCAATG 84858 36 100.0 38 .................................... GGCTGGCGGTGATCCCCGCCGGCACCGAGTGCCCAGCC 84784 36 100.0 37 .................................... AGATATCTGCTCAGGAACAGGTTGTAGGCGATCTTCC 84711 36 100.0 36 .................................... CCTCGCTGGCAACCATAATCCGCCGGTTTCACTTGC 84639 36 100.0 37 .................................... GAGAGGCACGCCACCATGCGCCGAGAAACCAACCTCC 84566 36 100.0 36 .................................... GGCATAGGGCTCACATGACATATCGACCACCAGTTG 84494 36 100.0 37 .................................... GCTATTCGCGGCGCAACCCGGGCGTGAAGATCATGGG 84421 36 100.0 38 .................................... GCCGCGGGCCGCGAGCAGTCGCGCCGCGAGCTGCTCGA 84347 36 100.0 39 .................................... AACGCCCTCGGCCATCGCGGGCCGCAGCGCGCCCGCGCC 84272 36 100.0 37 .................................... GAGCGTCGATCCCGACGGGGTCGGGTCGCGGAGCTGT 84199 36 100.0 38 .................................... GCGATCGTGACCCAGCAGTGGGGCGATTGGGCCTCGCG 84125 36 100.0 35 .................................... GCGACGCGGTCACGCCGCTGGGACAGATCACCAGC 84054 36 100.0 37 .................................... CGCCTTGAGCTGTGCGCGCATGTCGAGAAGCCGCTGC 83981 36 100.0 39 .................................... GTGGGGCGGCCAGGTAGTGGGGCTGCCTGGCGAAGCCGG 83906 36 100.0 36 .................................... GTCTGCCGGTCGAGGCTCTGCCAGCTCACCGGCAGC 83834 36 100.0 34 .................................... GGCACCCCGCCCCCCGGCCCGCCGCCCCGCTGCA 83764 36 100.0 37 .................................... GCGGCGCTGACCGGGCTCGGCAGCGTCGTCTTCCGCG 83691 36 100.0 37 .................................... ATCCAGGCCGGCGGCGTCCGCCCCCTGCCCGAGCGCC 83618 36 100.0 39 .................................... CTGTTGTGCCTCCGCCCCGGGCCAACAATCAGTCGCTCC 83543 36 100.0 35 .................................... TCCTTCAGCGCCGCGGCGGAGAATCGCTCCGGGCA 83472 36 100.0 37 .................................... CGCGCTCGCTGCGCGGCATGCTGTGTCTGTGCTCGGC 83399 36 100.0 35 .................................... TGGCGAGTGAGATCATCGCGCCGCCGCCGGCCCGG 83328 36 100.0 37 .................................... AAGCTCTTCTTGATGCTGCCGAAGTTGGAGTTGCCCT 83255 36 100.0 37 .................................... GTGCGAGCAGCACGCAGGCCAGGCGGAGGCGACGCTG 83182 36 100.0 36 .................................... CTTGGCTGGTCCACTATGTACGAGGAGCTTGAGGGC 83110 36 100.0 36 .................................... GCAGCGTCTTTCGGCGGGTAGCTGCTGTTGTACAAG 83038 36 100.0 35 .................................... GCGAGACCGGGGAGGCGGATGTCTACGAGGTGCGC 82967 36 100.0 35 .................................... GGCGGCGGCGAGCTGTGGCTGAACCGCGTTTCCGC 82896 36 100.0 37 .................................... GAACCGAACGGAGTCCAAGGCGTTGCCGGCCGCCGCT 82823 36 100.0 37 .................................... TAGTATGCGGGTTTCTGGCGCAGCAGTTCGCAACCCA 82750 36 100.0 37 .................................... TTCATCAAAGTCTCGACGCGGCCCGTGCCCGTCGCGT 82677 36 100.0 38 .................................... TACCTGCCTGACTCTGGCGTGGAGGATGGGCAGGCGTG 82603 36 100.0 40 .................................... ATGTCTACGTGCCGTCTGGCGCGGAGATGGAGCGACCGGA 82527 36 100.0 37 .................................... CCCGTCGCCCAGCCGCCGCCTAGGCCCTCGTGGTACA 82454 36 100.0 36 .................................... AGGAAGACGCCGCAGACCGGCTATTCGCTCTTCAAG 82382 36 100.0 36 .................................... GTCATGTCGCGTTCCCCAAAGTTGAGCCGCCGACCC 82310 36 100.0 37 .................................... GACGCATCACAGCGCCGCCAGGTGCACCGCGCAGACC 82237 36 100.0 38 .................................... TCGGTGGCGTTGTGGGCGTGGTCGGCGTCGGCGTCGCC 82163 36 100.0 39 .................................... GATGGCTGCGGCGAGTAGCGATTGAGCGTCGATCCCGAC 82088 36 100.0 37 .................................... CCCCCCCAAGGGCGAAGTGTGGACGCTGCCCCATTGC 82015 36 100.0 38 .................................... AACGCTTCCGCTTGCGCGCCCATCATCGCCCTTGGGGG 81941 36 100.0 37 .................................... TAGCCGTTCCGCTTTGCCCGCGGCTACCACGCTGCGG 81868 36 100.0 35 .................................... AGTCTGTTGGTTATGCGCATCGATAGATACTCCGA 81797 36 100.0 36 .................................... CGGTACTCGGGCGCGGAGTACTACCAGCCGCCGGCG 81725 36 100.0 35 .................................... GGCTCGGCGCCCGCCGCGAGCGTCCGCTCGATGCG 81654 36 100.0 36 .................................... TTCGCGGTAGCGGTGACGCGGTTCGGATTCCCCAGT 81582 36 100.0 36 .................................... GCCATCGCAGCCTAGCCGCAGCACATGGCCGGTACC 81510 36 100.0 37 .................................... CGGAGCCGCGTGTGTACTTGGAGCTGCCGAGCGATGC 81437 36 100.0 37 .................................... ACCTTCGCGATGCGCCGGCACAGGCCCTGCGCCAGCG 81364 36 100.0 37 .................................... ACCGGCAGCGACGGCGGCACATAGGCCGCGCCGATCT 81291 36 100.0 39 .................................... ATGAGTCTGGCGGTGACGCCCAAGGACGGCGCCAGCAGC 81216 36 91.7 0 .................................GTA | ========== ====== ====== ====== ==================================== ======================================== ================== 100 36 99.9 37 ATCTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Left flank : GTTCAAGCTCATGAAAGGCTACGGCGAGTGGGTGCAGCTCTCCGTCTTTCAGTGTCGCCTCACCCGGCAGCAGCATGCGGAACTGATCAGCCTGCTTGACGGCGTCATCCACCACGGCGAGGATCACATCTTGCTCCTAGACTTCGGCGACGCCGACCACATCACCCCGCACGTGGTCAGCCTGGGCAAAGCGGACTTTACGCCCGTGGAGCAAGCGCCGATCATTGTCTGAACCGGCGCAGAACGACACCAACGCGCGTCCGCGCTTCGCCTGATCCCAGCGAGCCCGAGCACACGAGGCACTCCGCCGCCTGCCCGCGAGCGCTCCAGTGCCGCCCAAAACCCGGCCAGCGCTCGCCACGGACAGATCTTTAACAATGAGCAACTTGCCGGCTTGTCCTCAAGCCAAGTTCAAGCCGTGCACAGAAAACTTGACCTAGCCCCCCACCGCTCGCAAACTGCTCCCGGAAGCGCACCCCATCAGGGCTCCCGCGCGAGCG # Right flank : TCCAGGATCTCCAGATCGCCGTTCAGGAAGGCTGAATCGAGCGCAAGCCGCACCTCGTCGATGCAGACGGCGCGGGTCTCGTCGGCGACGAAGACCGTCAGTGCGTCGGGTTCTACCGGCTCGCTGCCCCCGAGTTGGTCGATCAGGGCGCGATCCAGGACGCTGACCAGCCGCAGAAAGGCACGGCCCATCTGCCAGCCGGGCCTCTCCGCCGCGGGCAGGTCGGTGCCGAGTCGGTCAGTCGCGGCCAGATAGGCGCGCAGCGCAGGCAGGTAGTGGTCGCGCAGCCAGGCGGATGCACCGGCGTCGTCATCCAGCGACGACCAGTCGATGTCCGGCAGGGAAGGCGCCTCAACCAGCGCGGCGGCGGCCTGCCCCGAGGCGTTGCCGAGCGTCACCCGGTCCGCGTCCACCTGCTGCTGGATTTCCGCGAGCAAGGCCCGCGCGGACTTGTACTGCACCTGCGCGCTGTTCTGGCCATCCGGGGAGAGGCGGATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCGCGGCGAATTCGCCGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 25557-25032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000062.1 Thiohalocapsa sp. ML1 contig00063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 25556 36 100.0 34 .................................... GCACGGGGTCCCCTCCACATGTTCCCCCGGTGGG 25486 36 100.0 33 .................................... AGACGCACTTCAGCCCACCTCCCCGTGCGGGAC 25417 36 100.0 33 .................................... ACCTCCCGCGCCTCCACCTCGACACGGTTTTCA 25348 36 100.0 32 .................................... GCAGGAGCAGGGTGTGAGAGAGGGGTTTCTCC 25280 36 100.0 34 .................................... TTCAAGCACTGCCTGTACGCGAGGAAAGAGCGCA 25210 36 100.0 33 .................................... ATTTCGAGACCTTTCGCTGTCCCACGCAGTTTT 25141 36 100.0 38 .................................... ACCAGTGTCATTAGTAGAGCGAAAACCGGAATACTAGA 25067 36 97.2 0 ..........A......................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 99.7 34 GTCCGAATGACGCCCCGAAATTGAGGGGGTTACGAC # Left flank : GGGGTTACGACGAAGTCGCGCCCGGATCTGGGCGGACACCTCGG # Right flank : CCCGAACTGGTGCCCGCCACGAACTCGACAGCAGCGAGTAGCCCGGATGGAGCGAAGCGCAATCCGGGGCCGGCCGAGCCATTGGCGCGGATCGGGCGGGGGCGACGAGGGGGGCATGCTCCCGGGTTCCGCTGCGCTTCATCCGCAGCGCGCGGGGGCCAGGTCATCCTCTACGGACCGGCAAGACCTGCCACGCCCGCAATGCCGCGCGGGACCTGGCGGCGCTCGCGCCCTTTGGCGTCCCTTACGAGACGCTCAAAGCAGAGCAACGGGCGGTTGTCGACGGCGACGAGCGAGTAGCCCGGATGGAGCGAAGCGCAATCCGGGGCCGGCCGAGCCATTGGCGCGGATCGGGCGGGAGCGACGAGGGGGCATGCTCCCGGGTTCCGCTGCGCTTCATCCGCAGCGCGCGGGGGCCAGGTCATCCTCTACGGACCGGCAAGACCTGCCACGCCCGCAACGCCGCGCGCGATCTGGCGGCGCTCGCGCCCTTTGGCGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATGACGCCCCGAAATTGAGGGGGTTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 12425-12946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000079.1 Thiohalocapsa sp. ML1 contig00082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 12425 36 100.0 33 .................................... ATCTTGAACATGGCGTACCTCCTAAGGATATGA 12494 36 100.0 33 .................................... GTCTGGAAGGCAGTTGCCTTCCTCTACTTTTCT 12563 36 100.0 33 .................................... TGATATTACTATTCTGCATCACCCGTCCTTGTC 12632 36 100.0 33 .................................... TCCCAAGCGGACCTAGCTTGCCCAAAACCTTTT 12701 36 100.0 33 .................................... GCCGCGCCGATGTCCGCCGGCGCGATCGGATCG 12770 36 100.0 33 .................................... TCGTGCACTTTTCATGTTGTGCCCAGTGAATAC C,A,G [12782,12788,12796] 12842 36 100.0 33 .................................... ACGTCACTTCTCGTTGCCTCGAGTTTGTAAAAG 12911 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 8 36 100.0 33 GTCCGAATGACGCCCCGAAATTGAGGGGGTTACGAC # Left flank : ACCCTGGCGGCCCTGTGCGCCGTCGGCGATCCGGGCCGGCTCGCCGACGGCGTGCCGGTGACCTATCCGGTCACGGCCGCCCAGCGCACCGCGCTGCACGAGAACCAGCCCGCCGCTGAACAAAACGGCTTCAAGTGGTTCGTTGCCAACGACAAACGTGTTGCGGGCGGGCAGCAAGATGCCCAGGCACTGCCGCCACTGCCCACAGATCCCGATGCACCACTCGATCCGCTGCGCACGCTCCCATAGACCGACACGCGCGCTCCGCAACGACACCAATGGCGGCCGACTCGATTTCACATCCGAATTGACCCGGCCGGCCCACCGACTATGCTGAACCACACCGAGCCGGCGAGCCCGCAACCCACCTGACACCCGAGAACTGAACATATATGCAGCCAATTCAGCCCCCGCGTAACCTAACTTTTTCGCCACAGTGCTGTGCCCTGAACGAGACACCCCACGCCATTGGCAATGCAGAAGTTTCCAAAAGTCAAGCT # Right flank : CTCGTCCCATCTCGGCCCAGGTCCCGTACCCAGGCGTCCGAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATGACGCCCCGAAATTGAGGGGGTTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 5795-6961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000092.1 Thiohalocapsa sp. ML1 contig00111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 5795 37 100.0 33 ..................................... ACAGGGATGCACAGAAAGTGCGCGGGAAACACC 5865 37 100.0 33 ..................................... GCGCATGTCGAGCAAGCGCTGCATGCTCTCAAC 5935 37 100.0 35 ..................................... TGCTGCAAAGGCGCTCGTATTGCGGGCGCAGGAGA 6007 37 100.0 34 ..................................... CGCGGACAGACGACAGGGATGCACAGAAAGTGCG 6078 37 100.0 35 ..................................... GAGTTGCTTTGTTGCCATGATGATTCCCCAAGGTG 6150 37 100.0 36 ..................................... CCCCAGCTTGGCGCGCGCGCCACTGTGCGGACAGGA 6223 37 100.0 35 ..................................... AGTTATAGACGGGGTAAGAGCGGATCATTTGCTTG 6295 37 100.0 30 ..................................... AGGGAGACGGTGTAATACAGCGGCGCGAGA 6362 37 100.0 33 ..................................... GCTTGCCGTGCGTCCGTTGGGATAACCCATAGC 6432 37 100.0 34 ..................................... CTTAGAGTCCAGGTCGTTGCGGAGGGGGAACTGT 6503 37 100.0 33 ..................................... GCGGTTTGCGTCTGGTTACGTCTGGTTACGTTG 6573 37 100.0 34 ..................................... TAAACACTGCACCCGCTTTCCGGGCTGCGTACAC 6644 37 100.0 34 ..................................... GCAGTGGTCATCTCCTTGTCCAGTCCAGCAGGCC 6715 37 100.0 33 ..................................... GCGGCTGAGTTCCTGTAAGGAGCAGCCGCACCT 6785 37 100.0 34 ..................................... GATGAAGTCTTGTTTGTTCATCTCTTGTGTCTCC 6856 37 100.0 32 ..................................... GTCACACAGCTCCCTGATGTCGTGCTCGGCGG 6925 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 100.0 34 CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Left flank : CGGCCTGCCGCTGCAATACTCCGTCTTCATCGTGCCGGCGACCGCCGCGCGCATGGAAGGCCTGCTCGCCGAGTTGGCCGATATCATCGAGCCCGCCGAGGACGACATCCGCGTCTACCCCCTGCCCAAGAACCCCGACATCGTTCACCACGGTCGGCAATGGCTCGCCGAAGGCATCCAGCTCCTCGGCGACGACCCCCTCGGCCGCCTCAACGCAGCGCTTGCGGACCCCGCCGACGCCGACTAAAGTCAACCGCGGAAACCTTGCGAAAAGGGCCGGCGATCGACTGTCCGACCAGCGAAAAGCGACAGCGCGCTGGCACCCAAGCCCCAGCGCGGGCGCAAGAGCCGACGCGCCTCGTCCCGGCGCGGTGTACCGTGATCAACCAGGTTCTCGTCAAGCCCATGGCAGCACACGCAACAACAACTTTCCGCAGCCCCGAAAGCCCGGCAACCCCCGCCGCAAGCCCCTGTAACCACAGCGCTTTCGGCGCCGGGCT # Right flank : GGGAAAATGCTCGGTGACCAGGCATTGAGAGGACGCCGAACCAATGACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 11982-10253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABX01000082.1 Thiohalocapsa sp. ML1 contig00085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 11981 37 100.0 33 ..................................... TAGCTTGTCCGCAGTCTTGGACCAGCTTTCCGC 11911 37 100.0 34 ..................................... CGGAAGACCCTGCTGATCTCAACGCCGACGATCG 11840 37 100.0 31 ..................................... ACCGGAAAAGTGCTTGGTGTACATTGTTTTC 11772 37 100.0 33 ..................................... GGCTCGTCCGGGAATGCTTTGTTCTGCAGCGCC 11702 37 100.0 35 ..................................... CGCATGGTCAGGGCCGTGCCGTTGAGCTGCACGCG 11630 37 100.0 33 ..................................... GCCGTTATCGACACCCCACGCGCGCAGTGTTGA 11560 37 100.0 33 ..................................... ACCCGCCACGCTTGCGGTACGACGCCAGCTTCG 11490 37 100.0 34 ..................................... GACAGAAGCGTGCGCGCGTCCATACCGGCATCAT 11419 37 100.0 33 ..................................... CGCTGTCGCCTACCAGCAGCAATACGCCCTGGC 11349 37 100.0 34 ..................................... AGTGCCGTATGCACAGAACGCGCGGAGCTGCAGC 11278 37 100.0 34 ..................................... TCCTCTTCCGTCCATACTTCTGTGGCGCCCGCCG 11207 37 100.0 35 ..................................... GGTAAGCAGGTCGCGCTTTTGGAGCTGCGGCATCA 11135 37 100.0 33 ..................................... CTCCTCGGCGGCGGCCTGTGCCCAGCCTTCGAG 11065 37 100.0 34 ..................................... GGAGCCGGAGCGCGCGGGCGTTGTCGAGGTCGTC 10994 37 100.0 35 ..................................... GCACAGAATGCGCGGAGCTGAAGCCGAAAGCCGAA 10922 37 100.0 35 ..................................... TCCCTGGGGCGTGAGGGTGTCCCTGGGGGCGTGAG 10850 37 97.3 34 .................................T... GATGCGTCCTGGGGTCAAGACGCATCGAGAGAGT 10779 37 100.0 32 ..................................... GGCCGCAACCCCTATCGCTTGGGGCAGGAACG 10710 37 100.0 35 ..................................... TGGTACGTGTACGCCTTGTTAGTGGCGTACATGCC 10638 37 100.0 31 ..................................... CGCCTTGCGCCGCGGGTCGAGCCCAAGGTCG 10570 37 100.0 33 ..................................... CGCGGTGCGCAGGTCGCGCAGAAGATCCTCGCG 10500 37 100.0 34 ..................................... GCGAGCCACTGCGAGCGGGCTTCGTTGTAGCGGG 10429 37 100.0 34 ..................................... AACGTTGACGCGTCGTTGATGACGTCGAATAGAC 10358 37 100.0 32 ..................................... ACGCCGAAGCCTAATGAATCCCGAGTGAAGGC 10289 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 25 37 99.9 34 CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Left flank : AAAAGGGGATTAAGACGCGCTCCGCAAGGCGTGTCGTCTCTCCCACCTT # Right flank : TCGATCCTGGCGCAAAGCTTCCCCTTGGGGGGGCGGCCTCCGGATAATGTCCATTAGATGGCGCCATGTTGCGCAGACGACACACGCGAAGCTGGAGCTTCTCGGGCTGCGGTTACCAAGCTGGAGCTTGGTAACCAGGGTCAAGAAGGGGAGGAAGACGCGGTTTGGTTGTGGCTCGCTGCTACGCTCCAGCGAGCGTGGGAGTGTGTGGCTGGCGCGTGATCGCCGCGTGTCCCACGGTGGCGTCTCCGGCGCAGGGCGGTCGAGACGCTGGAGCGTCAGCCTGTGCTCCCACGCTGTGGAGCGTGGGAGCTAGTCGCGGGAACCTTGGTCTGGCTCAGTCCGGCGCGGGTGCGCGCGGCGATTAGCTCGCGGGCGAGGGCGAATTCCGGCGCCTGGGCGTCGTAGTGTGCGCGAGTCTGCGGGTCTTCCAGCAGGCGCGCTTTCAGTTCGGCAAGGTCAGTCATCGGTCAGCCTCCGCAGACGGTGGACCATCCGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCGAACCAATGACCCGCTCAAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //