Array 1 5148-5358 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOBP01000177.1 Vibrio cidicii strain 1048-83 Contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 5148 29 100.0 31 ............................. ATTGGTCATGCAGTCAAAGGGTATTACCTGA 5208 29 100.0 31 ............................. CGGATCTATCTTACTCCCAACTTAACTGGCT 5268 29 100.0 31 ............................. ACAATCTACCGTTGAATTCGCAACATGTGAT 5328 29 75.9 0 .......G..........C.G....CCAC | A,C [5348,5352] ========== ====== ====== ====== ============================= =============================== ================== 4 29 94.0 31 GTGAACTACCGAGTAGGTAGCTGATAACG # Left flank : AATGGAACAACTTCAATATTTTCATATATCAAACACTGTTCTTGTGCCAGAAGATTGTAAATACGTTGCATTTAAGCGCAGCCAATCCATAGATAAAGTCACCGCATCTGGGCAGTCAAGGAAAATTAGACGCCTAGAAAAACGTGCTCACTCTAGAGGCGAATCGTTTGATCCATCTTCGTATGCTCCAAAAGAACATACGGTATTGCCACATTATCACTCACTTGAGGTGTCCAGCAAACAGAGGAACCGTAACTTTCGACTCAACATTAGAATGAGCTCGGAGCGATACCTCGAAGGAACCTTAGTTTTTAGCAGTTACGGCCTATCAAACTCAGAAAACTCGTTACAACCGGTGCCCTTAATCTGACCCTTATTTTCTAAGTCGTTACAACCATATGAAATCATTAGTGTTTTAATATACTGTAAGAAACAGGGTAAAAAGCACTTCTTAGCATCTAATTAGTTGAAAATAATGAGCTAAACTTTGATTGATAACG # Right flank : CAACATCAACACCGTTACTTCCCAAACAGCCACTCGGCTGTTTGTTTTAGCCCCATAAGAGGATTATAATCACCATCACTACTGCGAAGTAGCTGATAATAAACGAACCACCTTCATTCGAGTACAAGAACAATTTACTGCTGAATAAGTAGATAACTACGGAAGAAGTTCTCTAACATCACACTCGAGTACCTTCGCCAATTGATAGGCTTTCTCGAGTTTGTTTCAGCGCATTCACCCAAACAGCAGTCTAGCTGATTTTGCTATACTGCAATTTATCTAAAACTCCTGCCAGGTTGTATGAGATGAGCAATAAAAAGCTGACTGAAAAAGAGCTGTTAGAAGGGATGAATCCTTATAATACCTACATTGATTTACTCGCCAAGACCGAAACAAAGCCTGATTGGTTGTCTTTCGCCGACGCGGTAGAGAGTATTACAGATAATTTCATGGCTAACCGAAATGAGGTTTTCGATGAGCTTCGTTCAGATTTGGTAAAC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTACCGAGTAGGTAGCTGATAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 22449-23990 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOBP01000101.1 Vibrio cidicii strain 1048-83 Contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 22449 32 100.0 34 ................................ AAGGCTCCCGCATCGATCTGAATTAGGTGATTTA 22515 32 100.0 33 ................................ CACCAATCTGCAAACTTGAATCCCATACTCTTG 22580 32 100.0 34 ................................ AAGCTCCCTCCTAACGTTATTGATTGCAATCTGA 22646 32 100.0 34 ................................ CTAAGAAATCAGGCGGCACCTATCTATCGCGGAT 22712 32 100.0 35 ................................ CGATTGCCTCCCTTGATATCGATGCAGACGAAAAC 22779 32 100.0 33 ................................ ATTGAAGTTGGTAAGCCATCCGCCGCCGAGCAA 22844 32 100.0 33 ................................ ATCATGTCTCTGGTTTTTGTTTGTATTATTAGT 22909 32 100.0 35 ................................ CAGCAGATCATCGCCCAAATCTCTTGGCTCATCAT 22976 32 100.0 35 ................................ TAAAACTAGCGGCGTAAGGAGGCGGTAATGTACAC 23043 32 100.0 33 ................................ CGCCGAGATCTTCTCAAGCTAAGGATTGAGCAC 23108 32 100.0 33 ................................ ATGTCCAGACCGAAAGAAAAGACATGGCACAAC 23173 32 100.0 33 ................................ ATAATTATAATAATGCGCACTAAGGCCTATTTG 23238 32 100.0 34 ................................ TTTCGCTGCCAAGTACTGCTCTTTAGTCAGTCCA 23304 32 100.0 34 ................................ TTTCTCTACCTTCTTGCTGGTCATGGCTGCTTGC 23370 32 100.0 34 ................................ TGGCCATTGCGCTCACAAAACGATTCGCAAAGAC 23436 32 100.0 33 ................................ TGAACAAATGCAAGCTTACATCGACTCGTTTAA 23501 32 100.0 33 ................................ TGGTGCGCGTGTGTTGATTTGACCCTTGGATAT 23566 32 100.0 34 ................................ GACCAGATAACCAACATTATCGATGAGATATTGA 23632 32 100.0 34 ................................ TGTTTGCTTCCCTAGCTGCGTCTGGGTTGTCTCT 23698 32 100.0 33 ................................ TGGTTGGTTGATTACATTCCTGCCGGCGAGCAA 23763 32 100.0 33 ................................ AATATCATAGCCAACGCTACCCATTCGAAATTT 23828 32 100.0 34 ................................ TTCGACAACTTAGAAGAAAACATTATCCAGATAC 23894 32 96.9 33 ...................T............ CAGGCAAAACCAAGGGTTGCTTGCCCGTTGTTT 23959 32 84.4 0 ...A...............T....G...CT.. | ========== ====== ====== ====== ================================ =================================== ================== 24 32 99.2 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGTCAAAAACGCCTCAGACAATTAGCAAAGGTGTGTTTAGATAATGGAGTAAGGGTGCAGTATTCTGTATTTGAATGCGACATAGATGCCGCACAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCCATAGATATATTCAGAGATACCCTAATATTATAGTCGCTAGGCTTGAGTTCTCAGTAAAACACTGGGGATCTAGCGATTGGATAAGCTCTTTAAAAATATAGGAAATAATTATCTGTATAGATTCACACAAAGTAGTTTTGTGCTACCGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTCTGTACGTGCCTCTAAGAAGAGGCA # Right flank : CGAAATCATCAGGCTATTGATGTCACTGATTGTAACCAGCGTGTTGTTTGATGTAAAAAAACAGAACCTTTAGCACTATTCCCGTATCTGCTTAACTATACTCTTTGCCTTCCTCAAGTATAAAGTGCTCAATCAAGTGACTTTTGATCAACTCTTGTATAAAGCCATTTACAGCGCCTCGAATAGCAGAAATCTGCTGCAAAGGTGGTACTGGATGATGTGGGAGTAATCAGTCAACACCTCATATAATAAAGAACCTCCCAGATTGTATAAATAGGCCGTTCTGGGCGCATAGAGTGTATTTGCTTCATACATGGTTTTATTCACGTCCTATCACGGACGGCATCCTATCCAGCGGTATCGCACTACATTTTAGGCTACTAAAAGTTATCCGATGGGGAGGAGCAAGTCTGTGGTCGTAACTCACAAATGTCCATCTTCGAGCTAGCTGGTTGTAGCTAGATCAGATTTGTCCATCCAGACACATTTTTTCAAAGACC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //