Array 1 133884-132981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000013.1 Aetokthonos hydrillicola CCALA 1050 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 133883 37 100.0 37 ..................................... ACGAACAGTAAGTGTAAGGAACAGCCAACGATAAGCC 133809 37 100.0 36 ..................................... CTTTGTAACCCTGACTCATCCTTATTTCCTTTAACC 133736 37 100.0 34 ..................................... AATTTCTGAGCGCGGTCTACAATTTCATCCAAAG 133665 37 100.0 35 ..................................... ATTTCCCTCCCATCCGTAAGATTGAGAGGAAGCCC 133593 37 100.0 34 ..................................... CGATAAAAAGTGATTGTAATCCCAGCGCTAAACC 133522 37 100.0 34 ..................................... TAGATGGTGCTAAGGGTAGATTAACTAATCATAC 133451 37 100.0 35 ..................................... TAAATTGTACTCATCAAATGAAGGAACATTAAAAC 133379 37 100.0 34 ..................................... CTTATCAGCCAAATCAACTATCCATTGATATAAG 133308 37 100.0 34 ..................................... AAGATCCGCATAAACTCTCTTAAGATCTAGAGTA 133237 37 100.0 35 ..................................... GCCATCATACCTTTTCTCTCTGCGCCAAAGTATAA 133165 37 100.0 36 ..................................... AGTTGATTTGTTGGACTCGAAGTTAATGAATTGACT 133092 37 100.0 38 ..................................... TCTGATTCCAAGTTGAATGATAAGACTCAAAAGGAAAC 133017 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 35 CTTGAAATTTCATCTAATCCCTATTAGGGATTGAAAC # Left flank : AGTGTTTTGGGCGTGGACTTTCCCCGAGTCCGGGGGTAGGTTTTATTTAAATGTCTTGTACTTACATGTTTAAATCTTAACACAAATCCGTCCTAAAAGGACGGGGTTTTAAACCCGAGTTTTTTGATAAAACGACAGTCAACAAAAAACAAATTATTCCCCGTGTTCCCTATTCCCTAAAAATTGTGAAGATAGACAACAATGAGCATAAAATATTAAAATAATGCTGATTCTTTCTTAAATCTGAGACCAGACCATTTTCTTGACTTACTGTGCGGGTAGGTAGGTGTTGGAAAAGGACTCGACAAAGAAATGGCTGAAATCTTTGTGGTACGCTGCTTCGAGTGCATTACTCACCTAAAACCACCCGCACCCTTTGTCTGGAGTAGGTTTCAGCCAAATTTCCCTCTTGTCAATCTCACTCTCTGATGTTATGATTACTTCATCCGCACTTTTGAACCTTGAAAACCTAATATTTACTACGTTTGAGTATCGCGCCC # Right flank : CGTTCAATCGAACGAGCATAGCACCGAGAGAGGCAAATAACGCATAATTTGACACTCTCCTACACCATAAACAGAATCAGAACAACAATTGCCAAAAACTAATACACTTCATATAACAGAAGCGTTAGAGTAATGTCCACTCAAGGGACGAGGTAGTCATAGCATCCACTCTAAAACAAGTCCGAAGCGATTATCCTTACCCTTTTTAGCATTTTGATGTTGAATATCTGTTGCTAACCTAAGATGGTGAGTAAGAGCATATCCCACCGCAAGTGTTGTTAAACCAACTTCTTCATCGCTACCAGGAGAAACCCAACTTTGAGTTAAAGAAATATCTGCTGCACCACCGCGAGACAAAACCAACAGCAGCCTCGCGCCTAAATTTACCCCATCTGTTGAGTAGCGGTTTGTTTGTAGATGTTGGTAACCAAGGACAGGTGCGATATTAATATAGCTACCTAAAGGACGCAAATAGTAACGTAAGTCAGCACCATAAGTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCATCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 136803-135542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000013.1 Aetokthonos hydrillicola CCALA 1050 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 136802 37 100.0 35 ..................................... GGTGTTGGTATATTGATTGGTGTACCATCCTTATA 136730 37 100.0 34 ..................................... TAACACGTCTTACTTTATCAACTTTGACAACTTC 136659 37 100.0 35 ..................................... CCATCCGAATGTAGGTGGTGACAAACATAAATAAC 136587 37 100.0 35 ..................................... TAAGCAGCCCTTCTTTTTTCTTACTGTCTATATTG 136515 37 100.0 35 ..................................... CAACAACAGCATCAGGAAGTATACCAGTAACACTA 136443 37 100.0 35 ..................................... CCAAACTATCGCGGGTACAGCAGGATCTATTGGAG 136371 37 100.0 34 ..................................... TTCTTAGAATCTTCTAAAAATACAGATCTAATAA 136300 37 100.0 35 ..................................... GTTGCAGCAATGGCAGGAATGAGTGCTGTAGCAGC 136228 37 100.0 35 ..................................... TTCCATTATTTAGCAACTTCAGATTTTATAAATTT 136156 37 100.0 34 ..................................... TTTAATTTTTGATTCTCTTTGCGAAGGGCTGACA 136085 37 100.0 39 ..................................... TTTTATGATCTGTGATTCCAGATCGGAAACCATATCATC 136009 37 100.0 38 ..................................... GCTGTCTCATAAACTAATGCTGATGTATGAGATTTTAA 135934 37 100.0 34 ..................................... TAGATATTTCTGTTTTGGGGGAGAGGTCTTCAGA 135863 37 100.0 34 ..................................... CAGAAAATCGTCTGGGTCTGCACCTTGATTAATT 135792 37 100.0 35 ..................................... AGAATATGTGTCTGGAAACTACCCCGAAACTATTA 135720 37 100.0 34 ..................................... ATATCTTCCTTGGGTGCGATCGCCTGTTCCTGTG 135649 37 100.0 34 ..................................... GGTAGAAGAGCATGTATAGTAATTATTGCCTGAC 135578 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 100.0 35 CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTGTATCCTACGATATTCCTGAAGATAAACGGCGCACGAAAATCCATAAAATCCTCAAATCCTATGGTCAGTGGGTACAATTTAGCGTGTTTGAATGTCAACTGACTGAAACTCAATACGCGAGACTGCGATCGCGTCTGAATAAGCTGATCAAACCTGATACAGATAGCATCCGATTTTATTTTCTATGTGCTTGCTGTTTTGGTAAAGTAGAACGTATCGGTGGTGAACAACCCCGCGACGATACTATTTTCTTCGCTTAGCGTGCGGGTGGGTAGGTGTTGGAAAAGAACTCGACAAAGAAATGGCTGAAATCTTTGTGTTACACTGCTTCGAGTGCATTACTCAACTAAAAACACCCGCACCGTTTGTCTGGAGAAGGTTTCAGCCATTTCACTCTGTTGTCAATCTCACCCTCTGATGTTATGATTAATTCACCCGCACTTTTGAACCTTGAAAACCTAATATTTACTACGTTTGAGCCTCGTGCC # Right flank : GTTAAATTTCTGCTTTGAGAATTCTCTCTAAACGCGCACTTTCATCTTTTGCCTCTTCAAGTAAAGCATTCCAATCGTCGGGAGGATGACCGCTCTCAAGCATTTTCTTAAAAACTCGATAAGCATCTGTGCTACTTTCATAGGCTCGCTTAGAACTTTCATCATTAACCCAAGCGTAAACAATGATTTTGCTGTCTTGATGATATCGAAAAAACAGTCGGTACTGCTGAAAAAATGTAGCTCTAAACCAGTGCTTATAATCGTCACCGAGCGTAGTGCCTTGGCGATAATCACTACGCGTTGGGTCTTGAGGAATAATATCAAATGCTAGTTTTACTATGGCAGCTAGACGCTTTGTGGCGTTTTTTTTCTTGTAGTCTTTGGGATACTTCTGACGCGAATACTCAACCTGTGCCAGAAGTTCATCGAGCTGGTTGAGAAAGAGAGGATGAGCAAATATATTCCAATCATTAATTACTAGCTGCTGATTCACAGGTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 63448-63682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000014.1 Aetokthonos hydrillicola CCALA 1050 contig_20, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 63448 24 100.0 49 ........................ AAATCAGGGGCAGAGCAACAACCCAAAAACGGAAGCCGTTTCCAACTAT 63521 24 100.0 45 ........................ GGGTGCCTCGTGTTCGGGCTTTAACAACGCAGAGTTTCCAACTAT 63590 24 100.0 45 ........................ AGGGAAAATCCCTGTAGTAGGCCATGTCAAAAAGTTTCCAACTAT 63659 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================= ================== 4 24 100.0 47 TCCGATTTAACCCAATCGGTAGGG # Left flank : CACTGCGAATATTAGGATCGTGGAGTAATTGATGATGGACAAATAAAGTGATTTCCTGGAAGCTTCATGAAATAATGGCTAAAAAAAGAGTTAGGAACAAAGACTTGGCAGAAGGTATCGGCATTACCGAAACTTCCGTTTACAGGTTACGAAAAACAGATATTATGCCTCGAATGTCACCCGAACGGCTAAACGCAATTTGTCAATTTCTGGATTGTCAGCCTGGCGATTTGCTTAGTTATGTTCCAGATGATGATGGAGAAACAGCAACAGAAACAAAATGAGCGACTTGTTCTACCAGAACAACTGGTTTCTAAAACTCGTAACAGCATAAGGTGATCGGCACTCACCGTAGCTCGCGATCGCTAATTTGATGGCAGTAATCGAAAATTTTACTAAGAGAGTGCGAGAGCCTGAAAGCTCGCCGTATTTACCCATGGGATGAAAGGCGACACGGGCGGTTTTAACCGCCGTGATCTGCCAGTACATCTATTGTCGTA # Right flank : GAGTTCGTCTAGCAGCCCTTACAGGGTAAGGGTTTCAGAGGCTAAATCGACACCACTGCTAAAAGTATAGTACATCATGCAAAAAATTGAGCAAAACACATACCTCAAACCTAAGCCCAGTAAGCAATCGACACCAGTTAACGAAAAATATAGGGTTTTGGAGATTGGCTGAGTGGTGTCGATGAGCATGTTACAAAATCACCTTAAATATCTTAAAACCTAGATGATATAGTGCTTTGGTGGATCTGCTGGTTTTTGACCGCCAATAGTTAAGACTCTGGAAACCGATTCTTCCGAAATCCAATAAAATCGCAAATTGTCCTGGGACAGTTTAACAAGTTTTTTCGACTTTTCAAAAAGTTGCCGCATTTCCTCCAAAGTTAGAAAACATTCAAACACAGAATACTGTACTCTTCGCCCGTAACCCTCTAGAAAGTTGGATAACTTAGTACGCCTTTTATCATCAGGAATATCATACACGACAACCACTAACATAAGAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCGATTTAACCCAATCGGTAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 70029-71422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000014.1 Aetokthonos hydrillicola CCALA 1050 contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 70029 36 100.0 35 .................................... CTTTATTTTTATGGCGTCTTTGTTTATGAATACCA 70100 36 100.0 38 .................................... TCTTTTTAACTATGCGAAGTTTTCTAATAACTTCACGT 70174 36 100.0 35 .................................... CTGCAACGAGACAAAGGAGCTTTTTAGTGAAGAAA 70245 36 100.0 36 .................................... CTCACCTGGTTGACCGATTGTTTGAGACGCTTGGGT 70317 36 97.2 36 ............................G....... CTGATCACAGATTGGCAAATTCACAAACCATCAGTG 70389 36 100.0 34 .................................... GTGCTCAAAAATCTTACAGACCGTTGATCGTAAA 70459 36 100.0 36 .................................... GATCCATCTCCTGAACAGTTTCCTTGTAAAATTTGA 70531 36 100.0 33 .................................... AGTACTTCTTGTAACACCCATGCTTCTTGTAGG 70600 36 100.0 30 .................................... TCTACCATCTTTCCAGTAGAATTCTACCTT 70666 36 100.0 38 .................................... GAGATGGTTTGTTTCCGGTCTTTACAGCTGCCGCTAAA 70740 36 100.0 35 .................................... TTGTAGGAGAAAATGAAGAAGGAACGTTTCTTCTT 70811 36 100.0 37 .................................... TTGTGCGCCATTTGGACCGTTTCCTACATTTCCGCCG 70884 36 100.0 35 .................................... TCTATCATTGCTGCTATTGTAAGAAAAAATAGTGG 70955 36 100.0 36 .................................... TTTGGGGCCTACAATTGTCTCGCTTTCAAATGTTAC 71027 36 100.0 37 .................................... TAACCGGCTTCCCAATGTTCTCGCAACGTTTTGTACG 71100 36 100.0 36 .................................... AATTAAAGTCGTCACACAATCTATCAGCAATGAATG 71172 36 100.0 36 .................................... AATTTGGTGCAAAAGTTTTATGGGTTTGCGCAAAAT 71244 36 100.0 34 .................................... CTTGAGTATCTACTGCGCCAGCTGAAAATCTACC 71314 36 100.0 37 .................................... TGTTCTTCGTGAACCGTATAATATTTATTATTATATT 71387 36 91.7 0 ...............C...............T..G. | ========== ====== ====== ====== ==================================== ====================================== ================== 20 36 99.4 36 CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Left flank : ACAACGATAACTGACATCTTGCAACCCGGCTGAGTCAGCCCGACACCCCGCCCGGAACTTAAGTTCCGGGCTAATAGCTTAAGTCCATTGAAATGGACTAAAATCCTTGCGCAGTCCTCTTGAGAGGACTTTAGCTATCAGCGATTTAAATCGCTGGCTGGCTAGCTGACTAGATGAAGAAGTGTATATTGACTGTAGGGTGCGTTAGGTGAAGCCGTAACGCACCTTGAATTTTTGGCGGTTAATCATACTACAAGCCAAAGAATTATAATACTATTTATCTTTAATAGATAACCAAAAAAATTTTGTAACATGCTCATCGACACCACTCACCCAATCCCTGAAACCCTATATTTTTCGTTAACTGGTGTCGATTGCTTACTGGGCTTAGGTTTGAGGTATGTGTTTTGCTCAATTTTTTGCATGATGTACTATACTTTTAGCAGTGGTGTCGATTTGGGCTCTGAAACCCTTACCCTGTAAGGGCTGCTAGACGAACT # Right flank : CAACAGTAATAATTAAAAGCCCCCATATCTGGAACTTAGAGCAGGGTTTTTTTTTTCAAAATTAAAAAGAGTAAGGACTATGTAAAATTTTGTAAAATCACTTAAAAGCTTTTTAGTTGCATGTTGATGCGCTAAAGCGCAACTACAAACTAAGGAGAGTTTTTTTGTACCGATCTACTGAAACGATGGACGGGCTATTTTACCAAAGTTTTTGGAAGCTATCTTCCTCAGATTTTCTACTTGCTTCATTCTCCAGAAAATCATCGCACTCTGGAGAATCATCAGGAAAGATAGTCAGTAACTCTATATCGTCTCCAAACTTCAACAAGCCATTTTCACTTAAATGTTGATACACATTAAATATCTATGAGGGCGAATGGCATTCGCCCCTACACACTGTATTTGTATCAGGATTTTCGGAAATGGTATGAGCGATCGCGCTTGGTAACGGTAGCGCTAAACCGCATCCCCAGCGCTTCAGGGATGGTCCTTCTTTGGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8017-7612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000091.1 Aetokthonos hydrillicola CCALA 1050 contig_203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 8016 38 100.0 37 ...................................... TTCATGCTAGAAATCGGCGTATTTCTCTCTTGTTCTT 7941 38 97.4 38 .....................................C CCGGAGTTTAATCAAAGAATTAGGGAGCTAAGATCTGT 7865 38 100.0 34 ...................................... TTGAGGTAAAAATCATGGAAGACGCATACAAAAA 7793 38 100.0 32 ...................................... TTAAATTCGCGGTTCCAGATTTGTTTATTGTC 7723 38 97.4 36 .....................................A TTATGTAAATGAATTTGGCCATTTAGCAATGAGATC 7649 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 6 38 99.1 36 GTTTCAGTCCCGTTACCGGGATTCGTTAGGTTTCAAGT # Left flank : AGTAACTATTAGTTTAGCATAACAAGTACCGAAGAACCAATATTTTTTAGTTTTTTTGATTGTCTCACGAGTGGTATCCAACTACGAGTTACACGACAACACGATGCATGTCCAGCTTTGTAAAAAGCTTGAACCCAAGCATTTATAAGCTATGCCACCCCTTTTATGCTCTTACAGCCCTGTTTATTTTTTCCTGCTGACTTACTTAAATAAATTTAGTATTCTTATTTACTATTTTTATAAAAATATTACGTATACCTTTATGCTACATTTTGAAGTGCGCAATGTGGGCTTTAAATTTTACTAACTAAAGGAGCGGCCAAAGGCGATCGCACGGCATGTTCGTCTAGAGTTAAGTTTTATTCCCATTTTTACTCCCTGCTCCCTTTTTTTTGTCAATATATCCACCTGGCTTATTTCGAGATTAAGCTGAATCAAAAACGAGACTGAGAAGGGGAATCAAGTTGTAACTGGCTCAGTAATATATGTGTCGGAATCGA # Right flank : CCACCCTCTAAAACCCTTACAGAGCAAGGATTCCATTACCAGTTTTGGCAAACCTCAAAAATAGGTTCATTTCAGCCTCTCTTATTGAGAGTAATTCCCATTTATTACCAACTTCCAAATGCTGTAACTATTTAATTGTCAAGGTTCTGGCGATTTTGGCAAACCCCCCCTAGTTTTAGCCCCCGCTTCGGTTTGCCAAACATCAAGCTAATACAACCACCATATAATAATTACTTCTTCTTGTCGAGGCTTTTCGAAACCATTAGTTGGGGTCACGTGTGTCGGGTTTGCTTCTGGTCGCTGTCGAGCGATCGCTGAAGTCTGATGATAGTCTTTAGGATGCTGCTTTGTCCTAATCGTACAACCATACGCCATTTTGGGGAACGAGTAAATCGTTGAACGATAATGTTTAATTAAAAATTTACTCAAAACAAACTCGTTCTGGTAGTAATTCCTCTCCGAGCTTGTGTAATTTCGGGTACAGTGATAAAGCTTTTTCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTTACCGGGATTCGTTAGGTTTCAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 15893-17251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000091.1 Aetokthonos hydrillicola CCALA 1050 contig_203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 15893 37 100.0 37 ..................................... ACTCATGGATTTATCTGTGGCGACTTTGGGACACTGC 15967 37 100.0 36 ..................................... ATAGTCTATGTGTACGTTCAGCTTCATGGTCTATGA 16040 37 100.0 34 ..................................... TTGTTGAAAGCTGTTAGTTTGAAATTAGACGGCA 16111 37 100.0 37 ..................................... ACCTCAAATATTCCTCTTTCATATTCGATTTTGTCGC 16185 37 100.0 35 ..................................... CGAATAGACCATATCTTTGTTTGATTAGTGTTGTA 16257 37 100.0 35 ..................................... AAAACTTACCCACTAAAGAGCAACTACTAGTTAAG 16329 37 100.0 38 ..................................... AACACAATAATATGTTTCAGCACCACTTACAAAGTCAA 16404 37 100.0 36 ..................................... CATATCATTAGAATATTCCCTCATCCTCTTAGATGC 16477 37 100.0 38 ..................................... TGCAGTAGCCTCAATCGACGCTAATATCTGCAATCAAT 16552 37 100.0 35 ..................................... CTTCAATGTCTCCATCGTCGTATTGCGTGACGATA 16624 37 100.0 39 ..................................... TCCAAAGGGGGAAACTAAGAAGCTTTAAGTTGCCTACAG 16700 37 100.0 35 ..................................... ACATTATGGCTTTAGGACTAGGACTTGGGCTGAAC 16772 37 100.0 37 ..................................... TTTTATCCTTAACTTGCTTGATAGCGCGCTGTTTTAA 16846 37 100.0 36 ..................................... CAAGCTAAGCAGAAAGTAAGACTAACTTTTAGCCAA 16919 37 100.0 37 ..................................... ATTGGGCGATCGTCAAGAATGAGCTACAGGGTATTAG 16993 37 100.0 36 ..................................... TTATTTTATGGTGATTTTCTTCGTGTTTCTGTGTGG 17066 37 100.0 38 ..................................... AATGTTAAAGCTCCCTGATTTTTAGGGAGCTTTCTTTT 17141 37 100.0 35 ..................................... GTCCATAGTCCTGGTATTTCTAGTTGGCGATCGCC 17213 37 89.2 0 ....................C.A.........C...A | TA [17244] ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.4 36 CTTGAAACCTAACGAATCCCGGCAACGGGATTGAAAC # Left flank : TTACCTGATAATTTACGATTTACCAGATAATAAAGCAGCCAACAAGCGCCGCACTCGTCTACATAAAATGCTTTCTGGTTATGGAACTTGGACACAGTACAGCGTGTTTGAATGTTTTTTAACTGCGATAAAATTTACCCAAATGCAGATTAAGATCGAGAAGTTAATTAAACCAGACGAAGATTCGGTGCGGGTTTACGTACTTGATGCTGGTTCTGTAAAACGAACTATTACTTATGGTTCGGAAAAACCTCGACAAGAAGAAGTTATTATTCTATAGTGGTTATATTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCAGGGGGGGTTTGCCAAAATCGCCAGAACCTTGATAACAGAATAGTTACAGCGTTTGAGAATAGAAAATAAATAGGAATTTATTTCAATAAGCGAGGCTGAAATGAACCTATTTTTGAGGTTTGCCAAAACTGGTGATGGAATCCTTACTCTGTAAGGGTTTCAGAGGGCGGA # Right flank : AAACTCGGGTTTAAAACCCCGTCGTTTTAGGACGGCTTTGTATTAAGATTTAAACATGTCAGTACAAGACATTTAAATAAAACCTACCCCCGGACTGGGGGAAAGTCCACGCCCAAAACACTGTAAGGAGACACGCCAGGTGCTTCAAGCCGGGAAACCCGTCCAGCGCACTGGCTTATCAGTACGCCTTAACGGCAAACGTATTGAGCCTGGGAACCTGTGAAAACAGGATATTAAGACTGGAAGGTCTTAAGAATCTCCGTCTCTTTAGAGCGCAGAGAGTCAAAAAGATAGACAATCACTGAAGAGGTTTGATCGTGGTCACTAGTTTTAAACAACTAATTGATGAGCCTGAATTAAACAATGCTTTAGACTCAGAAGCAAAGTTTATCAGCAGTGATATAAGTTGGAATAACTACGAAGCATTACTATCCAAACTAGAGGATAATTGCCACTATCGCCTTACTTATCTGGATGGGGTATTAGAAATTGTGTCGCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTAACGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 18551-18881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000091.1 Aetokthonos hydrillicola CCALA 1050 contig_203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 18551 37 100.0 37 ..................................... TTAGCGGGATTTAATCAATGGCTTTACCTGATGATTT 18625 37 100.0 37 ..................................... TTGCGATCGCCTCTGCTTGTGTCTGGGTAAACTTTCC 18699 37 100.0 35 ..................................... CCATTGTTCTGATGAGCGCTACTCAGCCAGCTTTT 18771 37 100.0 37 ..................................... ATTATTTCTTCTTTACACTCCTTCACTAAATCATGAG 18845 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 37 CTTGAAACCTAACGAATCCTGGCAACGGGATTGAAAC # Left flank : AGTTCCGAAAACGAACGAGCAAGTATTTTTTCCGAAACCTATGGATACGAAGAAATAACTTCCAGTAAGATTCTACCACAACTCGATATTGCTTTACTTGTAAGATGCCTTCTGATTTCTGATCCAATTCGCTCAAATAACGAATTTGAGCAAAATATTTAATCAAATGCAGATTAAGATAGAGAAGTTAATTAAACCAAACGAAGATTCGGTGCTGTGAAACGAACTATTACTTATGGTTCGGAAAAACCTCGACAAAAAGAAGTTATTATTCTATAGTGGTTATATTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCAGGGGGGGGTTTGCCAAAATCGCCAGAACCTTGACAAGTGAATAGTTACAGCGTTTGAGAGTTGAGAATAAATAGGAATTTATGTCAATAAGCGAGGCTGAAATAAACCTGTTTTTGAGGTTTGCCAAAAGTGGTAATAGAATCCTTACTCTGTAAGGGTTTCAGAGGGCGGA # Right flank : CGAAACCCGTTCTTTGCCCACGCAAAACTTCTGGGAGCGCCCACTTTATTTGCTATTGTAGAAAGACAAAGGTTAATTATTTCCCCGAAGCAGACAATGGTTGCTTTACCAGATCGCATCTTCATGAGTGCAGAAGAATATCTGATTTGGGAACCAGCCCAAGAGGAACGCTACGAGTATTGGGATGGTGAACTTGTCGCTATGAGCGGTGGTACACGTAACCACAATCGCATTTGTGGAAATTTCTTCAACCTGCTAGATAATGCTCTAGTTGATCGCGGCTGTGAAGTATACATTGTAGATGTCAAGGTGCAGATACAACCGGGGAAAAAGTACTTTTATCCGGATCTGGTGGTGACTTGCGATGAGCGCGATCGCGATCTACAATTGGTGCAATTTCCCAGCTTAATCATCGAAGTGCTATCACCTTCAACAGAAGCAGCCGATAGGGGGAAAAAGTTTGCCAGCTACCGCCAATCTTCTACTTTGCAAGAATATGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTAACGAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 40279-41326 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000017.1 Aetokthonos hydrillicola CCALA 1050 contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 40279 36 100.0 35 .................................... CACAGACTGCGCCGTGTTGTGCGTTATGCACTGCC 40350 36 100.0 38 .................................... ACTAATCGCCAAATAAACTTGCTCATGTTCTTTATAGA 40424 36 100.0 35 .................................... GATCACTAGGGCGCAAAAGCTTTCCTGAAAGACGG 40495 36 100.0 33 .................................... TGCCGGCAAGCTGTGCAGGTGTCTTGATAAGAG 40564 36 100.0 35 .................................... ACTTTTATCTTTCGAGAGAAATGTGCAATTGGTAT 40635 36 100.0 35 .................................... CAACGAACCCATGAACATTCCTTCGCAAAGTAAAG 40706 36 100.0 38 .................................... TTGAGTAAGCTTTAGCGAAAACGCTAAAATCACCCCAA 40780 36 100.0 39 .................................... AATACATAAATTGTTGCAATCAATGAGATAAGCTGGAAA 40855 36 100.0 35 .................................... TAGAAGTTGAATTGCCTCCCTCACCCCCTTTACCA 40926 36 100.0 39 .................................... CAAATACTGTAGTCAACGGACGTTGGGCAATCTTAAAGA 41001 36 100.0 35 .................................... TAGAGGTAGGTGAGCCAATCGTTTGAGATGACTGA 41072 36 100.0 37 .................................... GATAACTTCACGTACTTCTTCTATAGAAGTAGTAGAG 41145 36 100.0 37 .................................... AAAGGTTGTTAGATATCCTAACAAACAAGCAAGAAAG 41218 36 100.0 37 .................................... TCTTAGCTCCCAGTCAATCTCATTAAATTCAACCTCA 41291 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 100.0 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : CTAAACATGTTAGTGGTCGTTGTGTATGATATTCCTGATGATAAAAGACGTACTAAGTTATCCAACTTTCTAGAGGGTTACGGCCGAAGGGTGCAGTTTTCTGTGTTTGAATGTTTTTTAAGCTTGGAGGAAATGCGGCAACTTTTTGAAAAATCGAAGAAATTGGTGAAACCATCTGAGGATAATGTCCGCTTTTACTGGGTTTCACAAGAAGCTGTTTCTAGGGTCTTAACTATTGGTAGTGAAGAACCAACGACACCGCCAAAGTATTACGTGATCTAGATTTTAGAGATATTAAGGAGATTTTGTAACATGGTCATCGACACACTCCGCCAAATCGCTGAAACCCTATATTTTCCGTTGGAGTGTGTCGATTGCTTACAGGGTAAGGTTTTGAGGCTTGTCTGTTGCTCGATTTTCCACAACGTTTATAATGTTTTTCAGGATGGTGTCGATTTGTCGTCTGAAACCCTTACCGTGTAAGGGCTCCTGGACGAACT # Right flank : CTTTTTAAGTTGCTGAGTGCAGGCCATACAGTAGCTGTGGACCCTACCGATTGCTTATATCTTGCACCTTCAATATAAACGCGGGAGACGCATATCAAGAGTGCTAAAAATATTACGGAGAATGAAAAGTGCTATCTAAGTAAATAGATGTTGTGTATATGACTAAAAAAAAGTGATATTACGTAATGTTTAACAAATGTTGGTATGACACAATATGTTGCGCCAATGATGCGATCGTTGACAAAAGCTGGTGACGGGATTGCAAATGTTGACCAAAACATGAGAAAAAGGGCGTTGAAACATATATAAATTAAGCAAGAACAATGGTTTCAATTCTTGCCCACGGTTGGTACTTTCATTTATTGCTTATGTTTTAGCGCACTGGGCTTATTTATCGATCGCCACTACAGATTTACCCGATTGGGGACAAGCAGCACAAATTGCATTTCAAACCTTCTTTCCACAATTACTTCTGTCTTATTTTTTACTTGAACTTGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1038-1204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000422.1 Aetokthonos hydrillicola CCALA 1050 contig_2866, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 1038 25 100.0 46 ......................... GGAAGCGGTGATGCTCACACCAGAGAAATATCGGGTTTCAATCCCT 1109 25 100.0 46 ......................... TTGATAATGCCGTTCAATTTTTTACCGGATTTGCGTTTCAATCCCT 1180 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================== ================== 3 25 100.0 46 AATAGGGATTAGGAGAAATTTCCAG # Left flank : CGTACTTAAGCCAAATGGGTATCTTGCTCTATCGGATTTTGTTCCTACAGATTGGTTGATCCCATTTTTATGGGATAATAAGCAACTCGAAAGCTTTTATGGTCAATGGGACGTACGATATACGGCTAAATCCTACGCTAAACTTGCTGCTGAGACAGGTTTCCGTCAGGTAATCGAGCGAAATATTACGGTCAATACTTTACCAACTTATCAATTTCTTTGGACGATGAAGAAATATCTTAAATCAGATGCATATCTTTTTTCTGCGTTGTCCCAAACTTTCATCGCTGGATTGGTTAGTCAATTAGATTTGATGCGTTACATGATCTTTTCATTTAGAAGTTTCAATACCTAATAGAAATTCAATACTGCTCGATTAAGCCAAAAACTTAAATTTAATGTAGGTTGGGTTGAGGAACGAAACCCAACATTTATAAGGGTTTGTTGGGTTTCGCTGACGCTCTACCCAACCTACCATTTTCCTTAACTGAGCAGTATTG # Right flank : ATTATTAAAGCATCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGGGATTAGGAGAAATTTCCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 11535-10845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000122.1 Aetokthonos hydrillicola CCALA 1050 contig_296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11534 37 100.0 36 ..................................... TCGACGCTACAGTCACAGATAAAAGCCAAATCTTCT 11461 37 100.0 36 ..................................... CATCGTATATATTGGTTTATTTATTAGGGGGTTCTT 11388 37 100.0 36 ..................................... AGCTAGCTACAGCCTGTAGTAAGCTTGTAAACTCAA 11315 37 100.0 37 ..................................... CTAGAAGTTCCACTGCTAAACCCACATGGATACGCGC 11241 37 100.0 34 ..................................... CAAATTATCTTGACTACACTTCCAACTAATAGGA 11170 37 100.0 35 ..................................... CTGTGGGATGGTTTATGTTCAAACTCGTCTTCTGG 11098 37 100.0 35 ..................................... TTTCTTTTTCATGAGATACTTAGATAAAGCTTCAA 11026 37 100.0 36 ..................................... GTCCTAAAGCCCCTAGGGGCTAGTCCTGAGGTCACT 10953 37 100.0 35 ..................................... ATCGCATACAATCCCGAAAATCCATTACTTTTAAA 10881 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 36 CTTGAAACCTAACGATTCCCGGCAACGGGATTGAAAC # Left flank : ATTTACTAGTGAATCTTTACCTTATGCTAGCACTTTGCTAGCGTTCGAGTCGCGCACCCATCAGTAAATTGCGTATAAGGAAGGCTAGGTGAAAGCCCCTAAGAATGTGGCACGTTACAGTAACACATCCGCTTTACACAAATACACATTAAGATCAAGAAGTTAATTAAACCAGACGAAAATGCGGTGAGAATTTACGTACTCTATGCTGGTGCTGTGAAACAAACTATTACTTATGGTTCGGAAAAACCTCGACAAGAAGAAGTTATTATTCTATAATGGTTGTATTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCAGGGGGGGTTTGCCAAAATCGCCAGAACCTTGACAAGTGAATAGTTACAGCGTTTGAGAGTTGGAGACAAATGATAATTACTCTCAATAAGAGAGCCTGAAATGAACATATTTTTGAGGTCTGCCAAAACTGGTTATGAAATCCTTGCTCTGTAAGGGTTTCAAAGAGCGGTC # Right flank : ATTAAAAGAGAATTAACATTTAGGTTTCTTGACAGAGTTGTTGAACCACTCGTAAGAACTCCTGGGTGAGAAAATCTGAACCAGTTGCACTATAGACTTGCTGCAACTGTTGGTAAAACCATAAAGTCCCCTCCTTACCAGCTTTAAACTCTTGCCAAATGCTACTACCATTTTGTCGGAAGTCTGCTAATAATGATCTTGCATTGTGCAGTTTATCCGCCAAAGACACCCTCCTGATTGAGGGTGAAGCATGACTTATATTTTCTAAATATCTTTTCTTACGTTCTAACCAAGGTGGTTTTGGGTTGGTGTCGTATTCAGTACACCCATCGACGATCGCAACAACCGTCTCACCGAAAAGCTGCCGAATTTCCTCACGAGTGGATTTTCCACCTTGATCTTCAACTCCATCGTGCAATAAACCTGCGATCGCCTCTTCTTCTGTTCCTCCAGCTTCCAGTACAAGTGCTGCGACACTCAGTAAATGGGATATATAAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTAACGATTCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 13087-12463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000122.1 Aetokthonos hydrillicola CCALA 1050 contig_296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 13086 37 100.0 36 ..................................... TGATATGAGTAATTATACTAAATATTATACAAAACT 13013 37 100.0 38 ..................................... TCATAGCTACATGCAGTGCATGAGATATACCATCCTTC 12938 37 100.0 36 ..................................... TATGTAGTAAACAATCCCGCCAATCAACTTACTGCC 12865 37 100.0 36 ..................................... CTCTATTGTTCTTTGCTTATCCTGTATTGAACTAGG 12792 37 100.0 36 ..................................... CTCTTCCTAGGTTAGGTAATGCACGCAAGTATTCAG 12719 37 100.0 37 ..................................... AATCCATTCCAACAACTTCCACCATGGGCTATACCTG 12645 37 100.0 37 ..................................... AAGCCGTTAGACGTTCGCTTTCTGCGGGGATGGGTGT 12571 37 100.0 35 ..................................... AGGTTAGGAGATTGGGTACATGCTATTTGTGTTCA 12499 37 91.9 0 .......T...........T..A.............. | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.1 36 CTTGAAACCTAACGAATCCCGGTAACGGGATTGAAAC # Left flank : TACAACTTTATTCGTTGGTGGTTCGGGCTTTACGATTGTGTGACCAAAGGGCTGTACAATTAATATAGATGTGGATTGAAAGTAGATTCCCAAGGGAAGCTGCCTGAATAAAGTAAGCGCAGTTATTCGCGGACAGGTTTATGCGATCAGTTCCGAAAGGAACATCGCTGAGTCCGACGACTGTTCTTTGATTGCTCCAAGCTTAAGACTTAACTTTCCTATTGGTGTTGCTCGTGACTTTCTCCCAAAGTCTGGACATTGTTTAAGAATCCTTGTATCATCAAAGTATTAACTTGATGTTTGGCAAACCGAAGCGGGGTCTAAAACCAGGGGGGGTTTGCCAAAATCGCCAGAACCTTGACAACAGAATAGTTACACCGTTTGAGCGTTGGAGATAAATGATAATTACTCTCAATAAGAGAGGCTGAAATGAACCTATTTTTGAGGTTTGCCAAAACTGGTAATGGAGTCCTTACTCTGTAAGGGTTTCAGAGGGCGGA # Right flank : AACTCATCAAATCCCTATTCCAGCAATACAACGCGATCGCTAAACATTGCCAAATGACATTGCCTAACTCAATAAGCATTAAGTCAGGCACCACAATTTGATCCACTGTTTCTAAAGCAGCGATCGCGCATGTCCTCTGCGTGTAATAGTGTATAGGCAAAGACCATCGTATCAACTACCATCAGGGTCTTCCTTCAGATTTCCAAGCTTGCACCTGACTTTCTGCTTCTATTGGCAACCCCAAAGCCCGTTGACGAATACGAGCAAGCACTTCATCTCGTTGTCCATAACGTTTAAGTAACAAATCGCGGACTTCTTGCTCCATCGAAATGCCTTTTTGTGCTGCCATGCGTTTAATTCGCTCGACTAACTCATCAGATATATTACGAATAGTAATTGTTGCGATAGTGCCTCAATGACTAGTGCTAATTTACTAGTGAATCTTTACCTTATGCTAGCACTTTGCTAGCGTTCGAGTCGCGCACCCATCAGTAAATTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTAACGAATCCCGGTAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 5177-3494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000138.1 Aetokthonos hydrillicola CCALA 1050 contig_335, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 5176 36 100.0 34 .................................... GATGTGACATCAGAAGGAAGCTTTAAAAATACTT 5106 36 100.0 32 .................................... ACTCTGTCCAAACACCTCCACGCTCCAGTCCA 5038 36 100.0 36 .................................... AGGGCCTAAACTTTCACTTTTTGGCAAAGCTTTAGA 4966 36 100.0 37 .................................... CCTATGGTGACCTTTCCTAAAATCAAGACAAAGTCCT 4893 36 100.0 34 .................................... ACATTTCTCTCGAAAGATAAAAGTGCAGATATTG 4823 36 100.0 31 .................................... GATTAGTGCCGCGGAACTGGTTGTAGGTGGA 4756 36 100.0 34 .................................... AGAGGCGGCTGACCGCTCATTGAAAGAATGTTGC 4686 36 100.0 34 .................................... CTGGCCTGTTTAAGGCAGGCAGAAACTTTTTCAT 4616 36 100.0 37 .................................... CAAATCAAATTTCAAGTGCCCAAAGCAATCCAGAACA 4543 36 100.0 39 .................................... AAATTTTTACGCTTCTGGAGTTCTGAGGATTTCTTTTAG 4468 36 100.0 37 .................................... CTGATGCTACTATCCAACAAGAAGAAGTTGGATTTAT 4395 36 100.0 32 .................................... ATGCAAAATCCTTTCTGTGTATGGAAAATGAC 4327 36 100.0 37 .................................... ATTTAGATTGACACTGGAAGAATGACGAAAATATTTA 4254 36 100.0 35 .................................... GAGAACACTTCTTCTTAACCAACAACGCTAACGGG 4183 36 100.0 41 .................................... TGTACCCGCGATTTTTATGGAATATGCCCGACACAACAAAG 4106 36 100.0 36 .................................... ACCCAAAAAATTCGAAGTTTCATGAGAAATTCTCCG 4034 36 100.0 36 .................................... ATTTAACAAACCCCTCGTATGACCATTCGCTTGGTG 3962 36 100.0 34 .................................... GAGTAAGATAGTTTCCTTCTTCGCTGCAAATACT 3892 36 100.0 38 .................................... CCTTTTGAAACTTTTGCCAGTCTTCGGGGTTAATAATG 3818 36 100.0 37 .................................... AATTTCACCGCTGGACTTCGCAGTTTTCGGGCGAAGT 3745 36 100.0 37 .................................... GGTATGCTAGGCCAGAGGGGTTATTAATAGTCCCATT 3672 36 100.0 36 .................................... CATTGAAGTCGGCGCCAATTAGATTTGTTCCCTTGT 3600 36 100.0 35 .................................... GACAGAGGTATTCGCCACTATATTCACTGGATTTT 3529 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 24 36 100.0 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : TAATACACTTTGGTTAATCATGCAACCATCAAAGATATTACTTAATATTAAGTTTAATTTACTACTTAAAAAAGCATCATACGGAGACAAGATAGCTCTTTATATCTAAATCTATTCTAGATTGTTGGTTAAAAAAATGGTATTTTGATTAAGTAATAATTATTACTATTTACTGTGAGAGTTGTTGTTGTGTATACTATTTTTAGTAGTAAAAAATCTACGAAGTTGTGGTTGAATCGTTTTTCACAAACACCTGCACCTTCAAAGCTCGATGCTGTCTAGCTTTTACGATTATTTAGGAGCTTTTGTATCATGGTCATCGACACACTCCGCCAGATCGCTGAAACCCTATATTTTCCGTTGGAGTGTGTCGATTGCTTACGGGGCAAGGTTTTGAGGCTAGTGTTTTGCTCGATTTTTCCTACCGTATATAATGTTTTTCAGGAGGGTGTCGATTTGTCGTCTGAAACTCTTACTGTGTAAGGGCTGCTAGACGAACT # Right flank : GAAGCTCAACATCTGACAGTGTTCAAGGGTTGTTACTTCACCCATTAATTTGCACGAGGTGGAAGGATTAATTTGCACAACTAAACCAGAAATTACTATGTTTAGGTAATGCTATAAAACTTGTTTAACGGAGGTGGAAGGATTAATTTGCACAAAGTATAAGAATGGAACAATTCATTTGCACGAAACATATAAAAATTATTTCAATAGCTCAAACTCGGTCCTTAAGTCAGAAAATTAAAACAGCCTAAAAATAATGGTTTTAGCTTCGATTATACTTTCTAGTCTTGGTGGAAACATAAATTTGCACGCCCTAAGTAGAAGCATTAAATTGCATTTTTGCAAAGTTATGAGTAAAGTAACAAGGGTACATAGACCCTACCGATTGGGTTAAATCGGACTTAAATTACTGTAGTGCGGGCATCTTGCCCGCATTTCGTATAGAAATTAAATACGCAACAGCTTATACAGCTTAATAGTTCACGATTTTTGATCAAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 8173-8647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000030.1 Aetokthonos hydrillicola CCALA 1050 contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 8173 38 100.0 37 ...................................... GCTATTTCGCCCCAGGGGATAACCTTATCGATTGCCA 8248 38 97.4 34 G..................................... TGTATTGAATTTAGCAGGATAATTATTGTCGATG 8320 38 97.4 35 ........G............................. AGAAAAAATTACAACTTACTTCTTAACCACATCAT 8393 38 100.0 34 ...................................... ACCACTTACTTGTATACAAAAACTCTGCAAGTAG 8465 38 100.0 35 ...................................... TTGTCTACATAAAATCCATCACTTTGTCGTTGCAA 8538 38 100.0 34 ...................................... AGCCTTGAATTTTCTGTCCACCGTCGTGAATCTG 8610 38 94.7 0 G.....................A............... | ========== ====== ====== ====== ====================================== ===================================== ================== 7 38 98.5 35 ACTCGCGCCGACTGCGTTAAGTCGGATTAGTTGGAAAC # Left flank : GTGGATAACGCTAAACTAAAAGCTGCTCAAAAGAAAATTTCTCTAGATGGTAGTCTGATTAATCAACAGATAAGTTTAGAGGGAACAGTTCCAGCGTTTCCTAGTTGTAGTAATAGTCGGGTTAAGATTCAAGGTGAAGTTAAAGGAAAAACCCTATCTGGTCAGATCAGTTTAGGAGCAGGTACCACGCCAGATCAATTTACTGCTCAACAAGAAGAAGTTCAGCAAAAACAGGAGAAACATTAAGTTGATGGAAACGTGCGATCGCCTTTACAATGGTGACTGTTAAGTAGCTTGATGTTTGGCAAGCCTAAGCGAGGGTGAAAACTAGGGGGGTTCTGCCAAAACCGTTGAAAGGTAGATAGGGAAATGGTTGTAGCGTTTTGATATTGGAGGTAAATAATAATTTATGTCAATAAGCGTGGTTGAAACGAACTTCTTTTTTACTTCTGCCAAAACCTCTTGTGGAGTCTTTGCTCTGTAAGGGTTTCAGGCGACAG # Right flank : CATTGCGAGAAGCCGGAGGCTACGCTCTTACAAAAATTGGTAACCCCACCGAACCCTTGGAACGTTGCGTTACGGACTTCGTCCTAACGCACCCTACGTGTATTTCAAAAATTAAATATGATTTCTGTTAATGTTTCCTATATTCATTCTTAGTTTCAATTTAAATCTTCTTTTCGTCAATATTTTTAACCCTTATATAAGGTTTATATCAATCAGAGGTAATACTAATAACAGTTATTTAGCTGTGTTAAAACTGGTTTTTAGATTTCAGAATAACTTGAATTTTCTATCCATTATAATCTAATATTCTATCTATAGAAAAAATAGATTTTCTCAAGGGTTTATCTGTACTACTCTCAAGGGTATGAGTTAAAAGCATCACGAAGTTTATAGCTCAGGTCATCAGCAACGTTATAGGGAAAATATATGCTAAAAACTTCTCAAACTGTTCAGACTCCATCTGTGGAATGTTTACGCAAGCTTTGGTCACAGCGTTACGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCGCGCCGACTGCGTTAAGTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 21564-19936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000030.1 Aetokthonos hydrillicola CCALA 1050 contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 21563 36 100.0 36 .................................... AGTTGCGATAGCTTTTGTTGCAAATGTTGAAGATAA 21491 36 100.0 32 .................................... ATGGCACAGGAAATTGCAATGCAAACCCGCAA 21423 36 100.0 37 .................................... TTTGGATATTTCATTATCCCTAAACCACAGCCCCCTC 21350 36 100.0 37 .................................... AAGTTGCCGAATGTAAGGCCGCAAGACGCAACCCAAC 21277 36 100.0 42 .................................... TTGACTGCGAATCCAACAGCAAAAGTGGGCGATTTGCAGAAT 21199 36 100.0 40 .................................... TTTTCAAACTAAACGACTGGGAACCTTTTGAGCAGTGGAA 21123 36 100.0 36 .................................... GGGTGGTGGCGCTTGGGGAAATTCTTCTGATAAATT 21051 36 100.0 34 .................................... TTTCCTCACCAAAGAGGAACTATCCGAATGCACC 20981 36 100.0 38 .................................... TCCGCTAATTTCTCCTGTCGAAAAACGACCATCATACA 20907 36 100.0 36 .................................... CTGGTGACCCAGTTCTGAACGCGGTTCAGGATGCAG 20835 36 100.0 35 .................................... TAGGGGAAAGTTTCTTTCCTGAATTTTCAACTTTT 20764 36 100.0 35 .................................... TTCCTGGGGATACCAATTCCTTGGCGAAACTTGGG 20693 36 100.0 36 .................................... CTTTTTTTTGGCAATAGCTGCCACCTGGGTATTAAT 20621 36 100.0 36 .................................... GAGTGATGGAAACGACAAAACTGAGAAGAAATAAAG 20549 36 100.0 36 .................................... AGAAAAAAATAAGACATCTCCCATGATGTCTTAGAA 20477 36 100.0 35 .................................... ATTATCCCCAAAAATTCATAGTGACCGAATATGAT 20406 36 100.0 37 .................................... TTAAGTGCAAGAATAGCCAATACAAGAGTGAATGAGA 20333 36 100.0 39 .................................... AAACCTGGTCGCCGGATCGTCTTGATTGATTTAGCAGTC 20258 36 100.0 37 .................................... TTTCCGAACAATGGAAATGGAGCGTGGGGGAATTATG 20185 36 100.0 36 .................................... CTTTAGGCCAGTACTGACTGACCACAGATTGCACTA 20113 36 100.0 38 .................................... TTAATCAAGCGCACATCAAGTCTATGGTAGCGTAATTT 20039 36 100.0 32 .................................... CTTGAATAATAGGGGCATTAACCTTGTTCCTG 19971 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 100.0 36 GTTTCCAACTAATCCGATTTAACCCAGTCGGTAGGG # Left flank : ACCTAAGCCGAGATCTCAGTCAAGCCCGTGATAGCTTCACCCCATGAGCTACCTCCTTGATACTTGCTTGATTTCCGAACTGATTGCCAAACAACCAAATCAACAAGTTTTAGATTGGCTAGATGCCCAAGTGCCAGAAACACTTTATCTAAGCGTCATCACAATTGGCGAAATCGCTAAAGGTATTAGCAAAATGACTGCATCTAACCGCAAAGAATCTCTAACAACTTGGTTAAATGAAACACTACCGCTACGCTTTGAAAACAGAATTTTAAGTATTGATTTCTCAACAATGGTGTTGTGGGGAAACTTAGTTGGGCAACTAGAATTTTCGGGGCGATCTCTACCCGCAATGGATTCTCTCATTGCAGCCATCGCACTTCATAACTCTCTATCACTTGTCACGCGTAACGAAAAAGATTTTGCCTCAACAGGGGTTGTAATCATTAATCCTTGGTCTTTTTAAGGATTTAGGGATATTCTTAACAATGACCAAAATG # Right flank : AGTTCGTCTAGGAGCCCTTACTGTGTAAGGGTTTCAGACGACAAATCGACACACTCCTGAAAAACATTATACAACTTCCCAAAAATCAAGCAAGACATAGAGATCAAAACCTTACCCCATAAGCGATCGACACACTCCAACCAAAAATATAGGGTTTCAGCGATTTGGCGGAGTGTGTCGATGACCATGTTACAAAATTTCTGAATTCCCTTAAAATCTAAACCGTACAGGACTTATAATATCTGATCAAGTTATTGAACGATGATACTATTGCCTTATTCGTTGCAGCAGCTGCAATAATCTGGTTGTCTCTTCAACAGATGTTATGGCAATACAATCAGGTTACCAAGGAAACGTAGATTCATCTCTAGGTTTCTTCCTTAGTTTATAAAAAATGACTGATGGAAGGGTCCTCTTCCATGCATCTGCTAATCTATAAATTACTTTGACGAACCCACTGTGATTGCTCGCAATCACTAAAACAGTATGGTTAAAATTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCGATTTAACCCAGTCGGTAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 30873-29980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000030.1 Aetokthonos hydrillicola CCALA 1050 contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 30872 36 100.0 34 .................................... TTCCCTGAAAGTTCCATGGGAATAATAGTCGGGT 30802 36 100.0 38 .................................... CATAATCTTTCTGGATTAGAGAAAGACAGTCGTCTTAC 30728 36 100.0 34 .................................... AACAACCGCACCGCTGGGATTTTTCACCCATTGA 30658 36 100.0 33 .................................... ATAAAATCGCGTGGACAACACTTTTTGAAAGCG 30589 36 100.0 36 .................................... TCTGGTCTGCAATTGCACTGTTATGCAAAAAACCAA 30517 36 100.0 31 .................................... CTGATTTTTTCTTCTGTTCGTGCTTTTTTAT 30450 36 100.0 37 .................................... TAAAGGAGGTAAGTCCCGCCAGTTATCCCGGATAGAA 30377 36 100.0 35 .................................... GCTAGAAATCTGCGTTGGGTCATTCTTGAAGTGCC 30306 36 100.0 36 .................................... CTGTAAAGATCAGGATGAGGCCAGTTAGAACCACCA 30234 36 100.0 39 .................................... AACCTTTACTGACATTAGCACGAGCTAATGGTTCAGTTG 30159 36 100.0 37 .................................... AGTAATAAGAGCATTTGCGTTCTCCTTCACATGCATG 30086 36 100.0 35 .................................... GAGCACACCCATACGATTGAATTCAGGTAATTTAG 30015 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 100.0 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : ATAAACATGTTAGTGGTCGTTGTGTATGATATTCCTGATGATAAGAGACGTACGAAGTTATCCAATTTTCTAGAGGGTTACGGCCGAAGGGTGCAGTTTTCTGTGTTTGAATGTTTTTTAAGCTTGGAGGAAATGCGGCAACTTTTTGAAAAATCGAAGAAATTGGTGAAACCATCTGAGGATAATGTCCGCTTTTACTGGGTTTCACAAGAAGCTGTTTCTAGGGTCTTAACTATTGGTAGTGAAGAACCAACGACACCGCCAAAGTATTACGTGATCTAGATTTTAGAGATATTAAGGAGATTTTGTAACATGGTCATCGACACACTCCGCCAAATCGCTGAAACCCTATATTTTCCGTTGGAGTGTGTCGATTGCTTACAGGGTAAGGTTTTGAGGCTTGTCTGTTGCTCGATTTTCCACAACGTTTATAATGTTTTTCAGGATGGTGTCGATTTGTCGTCTGAAACCCTTGCTGTGTAAGGGCTCCTGGACGAACT # Right flank : CAGCGAACTGCGACATGTTAGAGAAAAAATTATTTCCCCCGGTTCTTGCGTACTTAACGTGCTAAATTTTTAATTACAGTCGATAACTTTGTTTTAAAATCAAGGCTTACAGGCGCTTATAGCCAAAATTTTAATCATCAGACCTAAAAGGCAGTAAATAATGGCTGTCATCTTATCCCAGCAAGGATTTCAAGCTTATTTTTCAACATATTTAGCACGCTAAGTACGCAAGAACCATATGAAAGGAGTAAAAAGAACACGAAATATACCAGTTCTTTATGACGAAATCAAAAAACCTCGTGCCACCAGATTAACTGATACTGCATGGAAAGGGATTACCGAAACCGCAAAACAACAAGGTATTAGCGCTAGTGAATTAATGGAGAGATGGGGGCGTCAACTAATATTATTAGTCGAAAAGAGTGTTGACGGCGACTAAAGTCGCGTCGCCTTCCTCCCATGTCGCGCATAACAGACAAGGTTGTTCTAAATCTAGAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2239-1776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000295.1 Aetokthonos hydrillicola CCALA 1050 contig_1369, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2238 35 88.9 38 .....T......T...C..............-.... CATGGTTTCTTTCTGACTTCGTCTCCACCGTCTCTCGC 2165 36 97.2 34 ...........T........................ GCTTTAAGCCCTTCTTTATTAAGGAACAATTCAG 2095 36 100.0 36 .................................... TCTAAAAGAAGCGATTAAGCGCAATAACGAAGATTA 2023 36 100.0 34 .................................... TTTGTACTCCGTCTTTCCGCGGAGAATACGGAAA 1953 36 100.0 38 .................................... GCTGCTATTTGTTCCTCGGTTAATTGATTTTCGTCAGG 1879 36 100.0 33 .................................... TCGGCATCCATTTCCTCGAATTCATGGGCCTGA 1810 35 75.0 0 .............A.A..G.GC.-.G.....C...A | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 94.4 36 CCCTCCCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : | # Right flank : AACGTGTATAATTTAATACGATTTTTCCAGGACTTGTTCTTAGAAAAGGCATATTTGTTAATATGCTTTGGGAATTGTTAACGAAAAAGTATCAGAAAAAATGAGTTAACGTTAACTATAGATAGCGTTTCTCAACTAGGTTAGAAAAACTATTGACATATATAGTGTTAAAAGGCAGCTCAATTAAAATCCCTTATGAATATCCTTAGTCACCTGCTTTCTCAACCAGCTCAAGATAACCGTCCAAAAAAACAACGCAGAGGAATTGAAATAAAATCCCCGCATGAAATAGAAGTTATGCGGCAATCAGCAAGAATTGTGGCAACCGTTTTAAAAGAAATTTCCGAGATGGTAAAGCCAGGAATGACAACGGCGGATTTAGATGCTCACGCGGAAAAACGCATTCGGGAAATGGACGCGGTTCCTAGCTTTAAGGGATATCATGGGTTCCCTGGTTCTATTTGCTCCAGCATTAATAACGAAGTTGTGCATGGTATCCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCCCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1970-1708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000262.1 Aetokthonos hydrillicola CCALA 1050 contig_1036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 1969 38 97.4 39 G..................................... TCCAATGGAATCTACGTCTGGCCTGGTAGTGAAAAATGC 1892 38 100.0 34 ...................................... TTTCGGTTTTACCGACTACTTCCAGATGGGCTAA 1820 38 100.0 37 ...................................... CTTTCTCTTCTGGATCATTATTATTAATGGTGAGAGA 1745 38 92.1 0 ..................................CG.T | ========== ====== ====== ====== ====================================== ======================================= ================== 4 38 97.4 37 AGTAAGAGTCCTTCTTTTCCCCGTAAGGGGACGGAAAC # Left flank : GATTTCTTGATACATATAGAATCGACTGTAAAATTATACTCCCATTACCTGTTGTTTCAAAGCTATTCGTGCAAATTTGACATAAGTCTTAATACAAGACGAGCATTTTGGTGAGGATTGCATTTCACCCGCTACTCCTCATGACCTGGGGGATTATTTATTTTTGTAAAGATGAGCCTAGGAGGATTACAAAGTATGTTTTGGCTGAAAATACCTCTATATCTGGCTTATATCGATTGTAACTAATTGTAAATTCTCTTGTAAAAATGTCGCAGTGAGCAAGAAAAAATACGAGGCAGTAAAGCAAAGCTTTTTAAAGAAAAACAAGATTTTTTAGTTTGACTCGTGGCTGTTTTCCTGTAATATAAGTAATGAAAGTCTTTTTTAGCGCTAAATGTTTTTGTCAATGTGTACTGTATCACAAAGCTACATCATGACTTCAGTATATCGGCGCAACTGCACCTTGAAAGCTAAATATAGTAATGGTTTCCAATGGGTAG # Right flank : CTGCGCAACGCTTACGCACTATGTACTTTCGGAGCGATCGCACTTTCGCTCAACTTCAAACAACTGGTAGTTATGCAGCTTCCATTTCCGGCTCGTCTAGAATTTCTGGGTTTCGCTTAATTGCTTCCCTACGGCAGGCTGCGGCGGTGGTGATTATGAGGAGTTGGGAAGAATGTGGCGTGGAGGATGATCCAAGGGCGGCTATTTTGGTGATGTTGGTGACGAACTGATCCCATAGAGTTAAGTTATCTTAAAATTTGCCGCCTGCGACGGGATCGTTCAATAGCCTCTAGCTTCTCTTCTAGGACATATTCTCTTAATCTTTCCCAACCCCATCTTGTAGCTGCACAAAAATTTACTTTTGTGCCTGTTCGTAGCAAAATATAATCTTCGTTGACATCGGCAATAATTTGGTTGCGAAAATCAGTTCCCCAGACTCTTCCTGCTTCTTCCCAAAAGACTTGACCAGGACTTTTAAAATTAGGATTGTCTAAATATTC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAGTCCTTCTTTTCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [9,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 2660-2916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKGC010000262.1 Aetokthonos hydrillicola CCALA 1050 contig_1036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2660 36 100.0 38 .................................... GATTTTTTGCTACCAATTGAGGCGTTTGAGCACTTTTT 2734 36 100.0 38 .................................... GAACTGTTAGTTACAGTCGTCTTTCTTTCTAGGAACGC 2808 36 100.0 37 .................................... ATATGGCGAGTGCCTACCCCAGTCACTACACAGTGAC 2881 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 38 CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Left flank : GCTTTGCTTTACTGCCTCGTATTTTTTCTTGCTCACTGCGACATTTTTACAAGAGAATTTACAATTAGTTACAATCGATATAAGCCAGATATAGAGGTATTTTCAGCCAAAACATACTTTGTAATCCTCCTAGGCTCATCTTTACAAAAATAAATAATCCCCCAGGTCATGAGGAGTAGCGGGTGAAATGCAATCCTCACCAAAATGCTCGTCTTGTATTAAGACTTATGTCAAATTTGCACGAATAGCTTTGAAACAACAGGTAATGGGAGTATAATTTTACAGTCGATTCTATATGTATCAAGAAATCGACACCACTCCTCCGAACCTTGAAAACCTCATAATCTCGTTAACTGGTGTCGATTGCTCTTGTAGCAAAGTTTCCAGGCTACAAGAGTCCTGTTTTGTTGAGAATAAACTCACCCTTATTGACAATTTAAAAAGTGGTGTCGATTTGGGGGTTTGAAACCCTTTCTGGGTAAGCGTTCTAGATGTGAACT # Right flank : AATAATATTTTTCTCAATTTCGTCAGCTTGTGCTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //