Array 1 103731-102197 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYRL01000012.1 Salmonella enterica strain BCW_4659 NODE_12_length_121305_cov_2.72321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 103730 29 100.0 32 ............................. CCACAGGCAGCACAACGATTTTTCAAACCGCG 103669 29 100.0 32 ............................. TCAATCCTTCCCAATTGGTGACTTATGTCTAT 103608 29 100.0 32 ............................. GGGGAAAGACTTTCATCCCATATGAAGCAGAC 103547 29 100.0 32 ............................. GTGATATATTCTCAGGCACGCGTAGAGTCTTA 103486 29 100.0 32 ............................. GTACTGATTTCCGGTGACGGTATATAAAACGG 103425 29 100.0 32 ............................. ACCCGCATGATGTCGCACGTTTTTGCAGAATT 103364 29 96.6 32 ............T................ ACGCCAGCAGCGCTGGCAGAAATTCAGGAACT 103303 29 100.0 32 ............................. CCCCCAGCGAATAAACGCGGCCTCGATTGCCA 103242 29 100.0 32 ............................. AACATGAGAACCGTTATCATATTCTTTAGAGA 103181 29 100.0 32 ............................. CCAGCACATTGACCAAAACGCCCAGGATCGCC 103120 29 100.0 32 ............................. CAATCAAATGGGGTGAGCCTGGTGGTCGATGT 103059 29 100.0 32 ............................. ATAGTGGTCGTTCGTGTTAATCAGGGGAGCGA 102998 29 100.0 32 ............................. AAAACCCCAGCCACCGACGCTTTCCTGGCTGA 102937 29 100.0 32 ............................. ATGTGTACAAACCGGACAGGAGCACTGATGCT 102876 29 100.0 32 ............................. CAGACAATAGCGGGGGCGGCGCTTCGTCCGCA 102815 29 100.0 32 ............................. CGCAAACAGTGCGTAATTCGCAAAATTCACGC 102754 29 96.6 32 ............................T GGCGCGCTTACGCGCTCAGCAGAAGTGGGGGC 102693 29 100.0 32 ............................. AATGCTTATAATTCTGCCGGTCTCTCAAGTTA 102632 29 100.0 32 ............................. TCTGCTGACAGCGCCTTATTGTTCACCTTGCG 102571 29 100.0 32 ............................. TTCCGGGGCCGTCGTGTGAAGGGGTTAACGCG 102510 29 96.6 32 ............................T GCAGCCAGGGCGCGGATCTCGTGGAACGTGGG 102449 29 100.0 32 ............................. CAGGCCGGTAGCGTAGAAGTTAGCGGCATCAG 102388 29 100.0 32 ............................. TTGTGTGCTTGAGTGCGACGATCAGCACAGTA 102327 29 96.6 73 ...........................A. CCAAATTGGTACTGTCGGCGGTATCCAGCGGGGATAAACCGCGTCTTGACGATCCATTCTGGCAGTCATTCTA 102225 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ========================================================================= ================== 25 29 99.2 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACAGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTCACCAGCAGATCAGGACGCTTTTCCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGTCTTAAGTCGTGCCAGCTATTGCCGTTCGGGAAAGATGCATTTTTCACGCGTTGCTGGTATCCATCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGATAGGACGGATTGCGGCCCGGATTGGTGTTGGCGGCGATACCATAATGGCGCGCAATCGCCAATGCCCGATCGCGGGTCAGTGTACGTACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTATCGCCAACAATAAGGTTATCGAGATTAATGACCAACAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120111-119899 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYRL01000012.1 Salmonella enterica strain BCW_4659 NODE_12_length_121305_cov_2.72321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120110 29 96.6 32 ........T.................... CCGGTGGTTGTTACGCTCTCTGCGCATTTGAA 120049 29 100.0 32 ............................. TATTCAGATATAACCAGCACAAGAAGTTTTAA 119988 29 100.0 32 ............................. ATCACGCGCCCGAAACCTACACCGGCTTATTC 119927 29 89.7 0 .........................C.GT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGAAATCAAGCATCCTGTTGGGCGAGTGCGTGATATTGAGGCACTGGATGAATTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTAATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTAATCTTATAGACGGCCTGTCGTTGCCGTCTGTGGCTCATCTATTCCCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCACGGATAAATTTTTCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAAATTTTTTGTAGCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAATTCATAAACAATGATATACATGTAGT # Right flank : TGCATAATCATAATCTGTGTGCCAGTAATGGCTGGTACAGACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTATACAGGAGAAGGCTATGGCGTTAAGGATCTGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCAGACCTGGATTAAGCCTGTTGGTCCAGGATGAGTTTACGTCGATCTTGTTCGATACCGGGCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATGACAGTCGAATTATCTGCCATCCAGATATTGCGCGTGAACGCTATGCGGCAATCAATTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGCGA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //