Array 1 672756-677426 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050534.1 Lactococcus raffinolactis strain Lr_19_4S chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 672756 28 100.0 33 ............................ TATTGGACGGGTCAAAAGTATTACAGTCTGACG 672817 28 100.0 33 ............................ TACATGAATCTGCTGAAAGAACTAGCCAAGGAA 672878 28 100.0 33 ............................ TCGAAGGGATCGACATTTTAGGAAGATGGTACT 672939 28 100.0 33 ............................ TGGTCTGATTTGCACGATAACACACTCGAAATA 673000 28 100.0 33 ............................ TGTCATTTTTTAATTCCTCTATTTCGACTTGGA 673061 28 100.0 33 ............................ TGGGAAAGAGGGATCGCTTATCCCGATGTTCCA 673122 28 100.0 33 ............................ CGGCTGAAAAAGTGCAACTCGTGAATAACTTGA 673183 28 100.0 34 ............................ CGATTACTTATCGCACGCAACCGAACCAGCAACT 673245 28 100.0 33 ............................ TGTAGATTGCTGTCAAGACCGCTATCATAATTA 673306 28 100.0 33 ............................ TATGAATCAGCATTATCGTTTCATAATCACGGA 673367 28 100.0 33 ............................ TAACATTACATGGCACGTTTGACGAAAATGGAA 673428 28 100.0 33 ............................ TCGTGATAATAGATTGGCGTGTGTGCTTGGTTC 673489 28 100.0 33 ............................ TGATCGGGACTAATAACGGATATTCCACGTCAT 673550 28 100.0 33 ............................ TTTGGAAATGTCAAACATCCTTTGTTTCCGTTG 673611 28 100.0 33 ............................ ATCTGATTCGTAAACAAATGGATAAACATAGTA 673672 28 100.0 33 ............................ TCAACAATATCATTGTTAGATTTTACAACATCT 673733 28 100.0 33 ............................ TCGTCAGATAACTTTGATAATGTTGGGGTGTTA 673794 28 100.0 33 ............................ GCAGACACAACAGCTACAATGTATGCTAATCAA 673855 28 100.0 33 ............................ TATATTCTATTACATCTTTCATAATCCCTCCTA 673916 28 100.0 33 ............................ TCAACTGAACAGCTTGAACAAAATATTGCACAA 673977 28 100.0 33 ............................ TATGTTACGGTTTTTCTTACTACTATGCTATCC 674038 28 100.0 34 ............................ CGGAAACAATCAAGTGGATGCAGCAGCAGATAGT 674100 28 100.0 34 ............................ CGCTTTGGCTAAATCAGAAGAAAACTCAAGGGAC 674162 28 100.0 33 ............................ TATTTTCTGGCGGTAAGTCTAACACTTTCCAAT 674223 28 100.0 33 ............................ TCTGCGTTCGTTCTAATCAACTTGCTAGGGTAC 674284 28 100.0 34 ............................ TATCCCTTACCAATGCTGAAATTCAAGACCGCAG 674346 28 100.0 34 ............................ TGAATCACCGTAAACAGGAACAACATAATCAGCA 674408 28 100.0 33 ............................ CGAGTTGCTTAGGCGGTTGCCAGCCTTCGAAAT 674469 28 100.0 33 ............................ CTTTATAAAGGAAAAACGGAATTTAAAGCAGAC 674530 28 100.0 33 ............................ TAATTACGTTTGTCTGATGCGTAATGTTCTTGA 674591 28 100.0 33 ............................ TACTTATAATTTTTTTCTCCTGTGCCATATCCA 674652 28 100.0 33 ............................ TGCAGTTAACGCACCAAAAAGGACTGCTACAGC 674713 28 100.0 33 ............................ TACCCGCTGTTAGTGCCAATTATCCACAGACCT 674774 28 100.0 33 ............................ TGACTGGTTTTAAACCTGCGTCATAATGAAAAT 674835 28 100.0 33 ............................ CACAATGAAAAACAGCGCATTTGCAATCATTAA 674896 28 100.0 34 ............................ TTGAATGACACGTCACCAGTATTATGGAATGCTA 674958 28 100.0 33 ............................ TATGTTGAAAGACATAATGGCTACTGATGATGA 675019 28 100.0 33 ............................ TAAGATACACCATGTTAAAAATGGCAGCAAATA 675080 28 100.0 33 ............................ TATCCTTTTTCTAACATAAATTAAGCTATCATC 675141 28 100.0 33 ............................ TACGTTCCGTTCAATCGGTAGTGAATTAGGCAA 675202 28 96.4 33 ..G......................... CGCAACGGGCATCATTGACCCGATTACAGGTCT 675263 28 100.0 33 ............................ CGGTGTTTACACCCTGATTGAGGAACACTCAGG 675324 28 100.0 33 ............................ TTCTAGACTCGTGAGCAAATTTCATGAGGTCTT 675385 28 100.0 34 ............................ CTCAGAAAAAAGAGTATGGGAACGTGTCAATAGC 675447 28 96.4 33 .........A.................. CTAGAGACGAGGAGAACGGTCTTGACATATCAC 675508 28 100.0 33 ............................ TGAAAGAGTTAAGCGCACAAGGATGCAGATGGT 675569 28 100.0 33 ............................ TGAGTTCTTAGACCCCGCTTATAAGCGAAACAT 675630 28 100.0 33 ............................ TTCCTCCGAGAAATTGGCATGTTGCCAAACAAC 675691 28 100.0 33 ............................ TCAGTGAAATATCACTTACTAACGCAGAAATTC 675752 28 100.0 34 ............................ TGATCGTAACGATGGCAAACATGACGAGTGACTA 675814 28 100.0 33 ............................ TATTTTCATTATCCTTTGCAATCTTGGCGGCTA 675875 28 96.4 33 ....................T....... TTCACGAGTATAATTGAAATATCTTGATACTGC 675936 28 100.0 33 ............................ TCAGCAGGATTTGAATAGTGGTGGGTTAATCTA 675997 28 100.0 33 ............................ TGTTTGATGTAGGCTTATCTGTCGATGGTGCCT 676058 28 100.0 33 ............................ TATCAGAGTTGTTTTAAGTTGTCAAGCGTTTTT 676119 28 100.0 33 ............................ TACTACCAAAAAGGTAACGTGAATATGTATCTC 676180 28 100.0 33 ............................ TATAATCATCTGGTGCTGGTGTCCAAGGCGTTG 676241 28 100.0 33 ............................ TTAAGTCAGCATATATCAATCACGATATACAAG 676302 28 100.0 33 ............................ TCGTTCAAAAGTGAATTGATTGACTTTAACGCC 676363 28 100.0 33 ............................ CTGTTGCTGAAATTCACCTAAAGTAATCGACGA 676424 28 100.0 33 ............................ CATAGATGCCAAGTATATCAGTCCAGAGCTTAA 676485 28 100.0 33 ............................ CGAACAAAGCGCAAATGAAATCATAAAAGATTT 676546 28 100.0 33 ............................ TATAATTACCTACAACTAACTGACTTTCATTTT 676607 28 100.0 33 ............................ TCCGGTCCAACTCTTCCTGTGTTTCAATTGCTT 676668 28 100.0 33 ............................ TGACTTAATGATTAAGCTTGAAACAGAAGGATA 676729 28 96.4 33 .......................T.... TATGACATCATACGAGATCGGGAAAAGAAGCGG 676790 28 100.0 34 ............................ TGGCAGGGATTTGTATTGTTGAAAAATAAGCTGC 676852 28 100.0 33 ............................ TGACAATAGCATTTGGTTTGAGGTGCTGCAACG 676913 28 100.0 33 ............................ AAGGAGTTCGAGAACATTACGAAAATATTGACA 676974 28 100.0 31 ............................ TACACTAATTAAGTAAATTAGTCAAGTATAT 677033 28 100.0 33 ............................ TCTCGGTAAAGGCGATGCAGATACGGTAGAAAC 677094 28 100.0 33 ............................ CTGAGTCAGCTGTATCAAGGTGGGAAAGCGGAA 677155 28 92.9 33 ............T..T............ CGGCAGACGAGTATAGAGAATGGATAGGTGCCG 677216 28 92.9 33 ............T..T............ TATGTATGGGAAGAAAAGACAGGAAAGCCTGTT 677277 28 92.9 33 ...A.C...................... CGGCGACATCCGTGTGAACTCAGCTTTCACAAT 677338 28 92.9 33 ..............C......C...... TAATACAAAATCTAGATATTGCCAAAGTGAAAT 677399 28 75.0 0 ....C.....T.T....TA....A...A | ========== ====== ====== ====== ============================ ================================== ================== 77 28 99.1 33 ATATTACCCGCACATGCGGGGATGATCC # Left flank : AGAAAAAGATCAAATTATTGAAATTGGTGCAATTAGAGTTGAGGGAACTGAACGAAGTGAATTTCAAATTTTTATATCGAACAATAAACAATTACCGAAAAATATAGTAGATCTTACTGGTATAACTGATGAGATGCTCCGGACAGAAGGTCTGGAAATCAAAACAGCAATGAAAGAATTTTCCGATTTTGTTAAAGATAGTCCACTGGTTGGCTATAATGTTGATTTTGATAAGAGTTTTATTCAAAATACAAATAAAAAATTAAATATTTCAAGCTTTGATCATCATCAGTTTATTGATTTATTGAAATTTGTCAAGAAAGAAAAAATGTTTCTTGGAAATTACAAGCTTCAAACAGCATTAAAAGCATACGAGATTTTAGAAGTAGTACCACATCGAGCATTAAAGGATTCAAAGCTGGTGGCTGAATTAGCGACAAAAGTGAATGGATTTCAAAATTTTTTGAAAAAAAGTCTTGAAAAATAAAGGATTGATTAGT # Right flank : ATTGACCGACTTTGAGTATTATTGATATCTATTTAAGGGGAATAGTTGACTACTAATGATTTATAACGAAAATAATCGTTTAAAGTACAAAACTAAGACCTTAAACTTTTTTCCAAACAAATTGAATTAGGGGAAAACAACTGAAATAATTACTTATAGAGTACAATAAGAGTGAATTTAGTTTTGACATTTTTTACCTGCTTATTTATCAATTGAAAGCCAAATATTTGGTGCTGAGTCAATCCTTTGTTATTCATCCCCTAGAAAGTTAGCTTATTAGAGTGGTAGTTAAAAAAGCATCTAACTTTTGTCAGATACTTACCTCAAATATTCAATTGCTTTTTTATATTTTTCACACCGTTCAAAATCAATTTTTCGGGGGTTATTAATTCTTGTCAAATCTGAATTATGCTTCAAATCTGCTAATTTTACTATTCTAGCAATCTTATTTTTCTTGACTTCTTCTAAGTACTGATCATAGTTTTGGTTTCTCTTTTTGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTACCCGCACATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //