Array 1 163356-160825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLV01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163355 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163294 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163233 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163172 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163111 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163050 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162989 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162928 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162867 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162806 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162745 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162684 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162623 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162562 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162501 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162440 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162379 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162318 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162257 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162196 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162135 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162074 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162013 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161952 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161891 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161830 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161769 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161708 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161647 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161586 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161525 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161464 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161403 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161342 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161281 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161220 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161159 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161098 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161037 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160976 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160915 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160854 29 93.1 0 A...........T................ | A [160827] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181478-179863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLV01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181477 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181416 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181355 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181294 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181233 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181172 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181111 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181050 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180989 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180928 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180867 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180806 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180745 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180684 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180623 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180562 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180501 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180440 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180379 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180317 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180256 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180195 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180134 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180073 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180012 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179951 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179890 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //