Array 1 3442658-3444089 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134386.1 Chryseobacterium nakagawai strain NCTC13529 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3442658 46 83.0 30 CA.........A....-.........G....T..A...........T AATTAGGTTAAAAGCTGAAAAGGAAAAGTA 3442734 47 100.0 30 ............................................... ATGAATGTTTTAAGTCCCAACGTCTTTTAT 3442811 47 100.0 30 ............................................... TGCTGAAGTCGTAGGTGAGTGGCAAGACAT 3442888 47 100.0 30 ............................................... TATGGAAAACGTTATCGACGCAGCTCAAAG 3442965 47 100.0 30 ............................................... TTTAAGACGAATTATAAAAACTAATTTATA 3443042 47 100.0 30 ............................................... AGGCTAAAAGAAAAGAGGCTCTTAAGTGTA 3443119 47 100.0 30 ............................................... TGGTCAATCTGCTGAAAATGCACAGGGTCT 3443196 47 100.0 30 ............................................... TTCATTTGAAAAATCCTATCTGTTTTAATG 3443273 47 100.0 30 ............................................... TGATCGTCAAATTTCAAACAAGTTTACAGA 3443350 47 100.0 30 ............................................... TGTATTGTTTTTTAGTGGTTAATCAATCCG 3443427 47 100.0 30 ............................................... CGAGATCAGTCGCTTTATTATGGCGAGTCA 3443504 47 100.0 30 ............................................... GAATATTATTCGATCCGGCAATCCAATAAT 3443581 47 100.0 30 ............................................... GAAAATAGTATTTGCAACCGTAGAAAGTAT 3443658 47 100.0 30 ............................................... ATGCAGATGTGAATTTGTACAGCATGTACC 3443735 47 100.0 30 ............................................... TAATATTGGGGTTTTTCTTCAATTGAAGGA 3443812 47 100.0 30 ............................................... ATAGTACATTTTCGCAAGAACATATTATCA 3443889 47 100.0 30 ............................................... TGAACAGATAATTACCAATATTTCCCTTGA 3443966 47 100.0 30 ............................................... AAAAATAAAATATACTGTAAGCCTTACAAA 3444043 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 99.1 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAAC # Left flank : AAAAAATCCCCGGATCTCTCCGAGGATTAAAACTAATCATAAACTCTATTTATTAGAGGAATTATAAAGTAAATATAATACTTACATGCATAAAATGCAATACTTTCATTTCCACACCATTCTAGCATTTGTCTGCAGGAACCAATCACTGCAATAATATAATAAATCGTTAAATTATTTCCACAAAAGTGAATGAATAAAAGAAAAAACCTCCCGTGTCAATAGGGAGGCAAAAGTTCAAAATGAATTATTAGTAAAGTGATGTGGTGTTAAACAAAGTTTTCTCTTCAAAACTTGCTTTAACATTAACAATGCGTGTGCCAATTACGTCACTGTTTAATGAAATCGTTCTTTTTGTGGTATGAAAAACCTCCCAAGACATTGAAGACATAAAAATGTTTGTTTAAAATATGAATTTTGAGCAATCAAAGGTAATAACTGTTTATATTTTTTTAATGATCACATTATTCTATTTTTTATTACTTCAATAGAGTCATTTA # Right flank : CCTCAAAAAACAATCTACTGAAAATCAATAGATTGTTTTTGTTTTTAGGATTCAAAATTTAGAATAATTCGAGCTGTTGAAAGGTTGGAGGAGGTTCTTCTTTATTTCTGGCGAAAAATATTTCAATGTCACCAAACTGTTTATCAGTAATGCACATAATGGCGACTTTACCTGCTTTTGGTAGCATAAACTTCACTCTTTTAATATGAACCTCAGCATTTTCACGACTTGGGCAATGCCTTACATACATTGAAAACTGAAATAATGTAAAACCATCATCAAGCAAAGATTTACGAAAACGATTCGCATCCTTCATATTGGCCTTAGTCTCTGTCGGAAGATCATATAATACTAAAACCCACATAATTCGGTAAGCGTTAAACCTTTCGGCATTCATATCAGTTCAGGATAAGAGATCAGACGTTTTTCTCCCGTATAACATTTATACAGTGATGTAGCTGTTGTTTTTATTGCAACTAGTAACGGTCTGGTTTTATCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //