Array 1 176222-179489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHHU010000006.1 Aeromonas dhakensis strain CN17A0050 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 176222 28 100.0 32 ............................ GCTTATGGGCCAGCTTCTTTTTATGGCTCAGT 176282 28 100.0 32 ............................ AGTGGGGTCGAGCTCACATTGCGAGAAGAGAG 176342 28 100.0 32 ............................ GGAAGTCGGTCATGTCTAGCTGTTGCTAACTG 176402 28 100.0 32 ............................ AAGTCCAGCTTGAGGGCATAGAGCGCTGTCAC 176462 28 100.0 32 ............................ ATCCCGACGATGATAGCGAGCATCATGATGGG 176522 28 100.0 32 ............................ AGTACGTCGGCCCGGCTAAGTTGGTGGCGGCG 176582 28 100.0 32 ............................ CAGGAGGAATTCGACTACCTGATGGACCTTGA 176642 28 100.0 32 ............................ TCACCTACACCCCCAAGAAACGGTACGACCAC 176702 28 100.0 32 ............................ ACATATATCTCGGTTCGAGTAACGTTGCTGGA 176762 28 100.0 32 ............................ TGGCAGAGCGTGATCCCGAACATGATCCAGCT 176822 28 100.0 32 ............................ ACCGATGGGGCCACCGAACGACGCCAGGGCGT 176882 28 100.0 32 ............................ TCAGCGAACGTCGACCCGGACATCATCATCTC 176942 28 100.0 32 ............................ AGCTTGACCTCGGTGGGGCACTCGTCGAGAAG 177002 28 100.0 32 ............................ TGGGGTGGCTACCGCGACCACCGCGACCACCG 177062 28 100.0 32 ............................ GACAACCAAGACCGACCCTTTCGAAGGAAACA 177122 28 100.0 32 ............................ AGGATGACCCCATGGCCCAAGCCATGGTGGCG 177182 28 100.0 32 ............................ TGGGAAATCGAAGTGCGGGGCAACATCCAGGT 177242 28 100.0 32 ............................ GACCTGCGCTATGTCCTGCTGACCGATGACTC 177302 28 100.0 32 ............................ AAGAACTTCTTCGGCTTCGGCGATGACGAGCA 177362 28 100.0 32 ............................ ATCGGCAGCGTGAAGGACGCGCTGCAGGCGCT 177422 28 100.0 32 ............................ GTGAAGGTGACATAGGCCACCCCATCTTCTTC 177482 28 100.0 32 ............................ ACCGGTTAGAGGATGTGTGGGGCAGCGTGGAT 177542 28 100.0 32 ............................ CGTTCGGCCAGGGCCGCCCGGATGTCGGTTCG 177602 28 100.0 32 ............................ AGTTCAAGGAGCTGTTCGGTTATGGCTCTGAC 177662 28 100.0 32 ............................ CTGCCTGTTTGGCCAGTTGAATGAGCGGGCAT 177722 28 100.0 32 ............................ GTCGAGAGATAGATTAGGCGAAATCCGCCTAA 177782 28 100.0 32 ............................ TACAGGGCATTGGTGCCAATGTAAAACCGCTG 177842 28 100.0 32 ............................ GGTGGCCTGCCGAGCGGCATCCTCAGCGATGC 177902 28 100.0 32 ............................ TTGGCGGCCTGTTGCGGCATAGGCGGCAAAGA 177962 28 100.0 32 ............................ TCGACGGGGCTTAGTGTGATCTGCCGGGATAT 178022 28 100.0 32 ............................ AGCACCCGAGTGGATGTGCTCGACGAGGTGAC 178082 28 100.0 32 ............................ ATGCTGACCCACATCATGGTCAAACTGAAAGA 178142 28 100.0 32 ............................ ATCATCGGATCCGGTTGCTGGGCCTGAGCCTG 178202 28 100.0 32 ............................ AGATTGGCAAATCCGCATCATCACCACCATTC 178262 28 100.0 32 ............................ TACCTGAAATTCAGTGAGCCGGGTATGGGGTC 178322 28 100.0 32 ............................ AAGAAAAGCACCGACAGTACCGAAAGCACCTC 178382 28 100.0 32 ............................ AATAAAAGCAATCTGGAGCGCGACCTCGATAA 178442 28 100.0 32 ............................ GGTACCGTCGCGAAAGCGGCCACCCCGGTTGC 178502 28 100.0 32 ............................ ATCATCGGGTAGGGCTCGTCGTAGGCCGTCAC 178562 28 100.0 32 ............................ GGTAACAAGCAGGTTGCGGGGGAATACGCCAT 178622 28 100.0 32 ............................ GGCAGCACTCCGGTCACGCAGATCATTGTCCC 178682 28 100.0 32 ............................ TGTCGGGCATGACGTGGAACGGTAACCGCCTG 178742 28 100.0 32 ............................ AGGAAGAGCAGCAGGAAGAAGCCGCATCCGCA 178802 28 100.0 32 ............................ ATGACGGGCACCGTACCGGATTTCTTGCAGGA 178862 28 100.0 32 ............................ GGGATCGACATCGAGCTTGGCAAGGCTGTGCT 178922 28 100.0 32 ............................ CCGACGCGATCCCGCCTGTGGATCAAGCCTAT 178982 28 100.0 32 ............................ AGCTGCGGGAACTGGGCCTTGATGTCGGCCAC 179042 28 100.0 32 ............................ TGTCGGGCATGACGTGGAACGGTAACCGCCTG 179102 28 100.0 32 ............................ TACTACGCCAAGGGCAACTTCACCTACAACCT 179162 28 100.0 32 ............................ TCGAAAAAGAACTACTGTCCTGTTACCAACCA 179222 28 100.0 32 ............................ AATGGAGAAAATCGTCATGGCACCAAGAAAAG 179282 28 100.0 32 ............................ AGTGACTCCACGGCCTGTTTAATTGTGTTCAT 179342 28 100.0 32 ............................ ACATTGGTGATGCCTGCCGCTGCGATCTTCCC 179402 28 100.0 32 ............................ AGGAACGCATTACCTCCTGCGCCGATGTTGTG 179462 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 55 28 100.0 32 CCTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : TGGCCGAACTGCTTAACCTTACCGAGGTGAACTGGTTGCAGGGGATGCGGGACTATATCCAGCTCGGCGAACCAGAACCCGTTCCTCAGGGAGCCAGCTTTCGTGTGGTAAGGCGGGTGCAGGCCAAGAGCGCTCACAACAAGCGTCGCCGCTCGGTGGCCAAAGGCTGGTTGAGCGAAGAGGAGGCGCAGGTTCGCATCCCCGATGCTCAGCAGAAGGCGATGTCTCTGCCTTATGCCGAAATGCACAGCCTCTCGACCCAAAGCCGGATGCGCCTCTATATCGAACACGGCCCTCTGCTCGATAAGCCTGTCGCCGGGATGTTTAACGCCTATGGGCTAAGCACCACAGCCACCATCCCCTGGTTCTGACCCTCTTTTTCAGGGCGTAGCTAACTCATTGATTTTTCAATGTCTGTTACGCCCTGATAAAAATAGGGTTCAGTGACGGATTTGGGGTAAGTTCTTTAACAATCAATTAGATAGCACTAATATGTAACA # Right flank : ATCTGGCTGGCCGCGCTCGGCGATTGTCATTTTCAGAAGACGACTGCACCAGTTGATTGGGCGTAATGGCTGTTGTGCAGCCAGCTCCTGACAGTTCAATATCAGAAGTGATCTGCACCAATCTCGACTATGCTCAATACTCGTGTGCACCAAAGCGAGGTGAGCATGGCGACGGAGGCTCTGTTGCAAAGATTGGCGGCAGTCAGAGGTAGGCTGTCGCTCTGCGCCGATCAGGCGGCTGCTGCGAAATGGTGGTTGAGCATGCCCATGGCCTCCGTCAGCGCCGAGGGCCCAATGCCAAAAGCTCTCTCCACAAGGCGCACCTCGCCCCTGATGCCGGGCTGCAGGCACCAGGGGCGAGCCTGTCCTTTGCGCAGGGCTCGCATGACTTCGAATCCCTTGATCGTGGCATAGGCCGTGGGGATCGATTTGAAACCGCGCACCGGCTTGATCAGTATCTTGAGCTTTCCGTGATCGGCCTCGATCACGTTATTGAGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 199767-200334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHHU010000006.1 Aeromonas dhakensis strain CN17A0050 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 199767 28 100.0 32 ............................ GCCAGGGTGCAGCTTGGTGAGGCTATTGAGCC 199827 28 100.0 32 ............................ TGTCTGCACGGCAAAAAAGCCGGCTGGATGAC 199887 28 100.0 32 ............................ GGTATCCGGCGGGCCAGGGTGAACACGTCATT 199947 28 100.0 32 ............................ TTTGATGTCGCGCATCACGCCATCGAACGCCT 200007 28 100.0 32 ............................ ACTGGTGCCAACCTGTCTCGCCTATCCAAGAA 200067 28 100.0 32 ............................ ATGAACAACACTTTGAAATGGGGTGTGATTTC 200127 28 100.0 32 ............................ AACGTCAGCCTCGGAGATCAGGTGCTGGCCAT 200187 28 100.0 32 ............................ GCAGTCGTAATAGCCGAACTCTATGACGTTGC 200247 28 100.0 32 ............................ TGGATAAACCACGCGATGGTCTGGTCGTTCAC 200307 28 82.1 0 ..................TCA....TT. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 CCTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : GCGGTGTCGTGCGTCGCCATCACATGTATGACCAGACCTTTCAGCGCGCCTTCAAACGTGCCGTAGAACAAGCAGGCATCACGAAGCCCGCCACACCGCACACCCTCCGCCACTCGTTCGCGACGGCCTTGCTCCGCAGCGGTTACGACATTCGAACCGTGCAGGATCTGCTCGGCCATTCCGACGTCTCTACGACGATGATTTACACGCATGTGCTGAAAGTTGGCGGTGCCGGAGTGCGCTCACCGCTTGATGCGCTGCCGCCCCTCACTAGTGAGAGGTAGGGCAGCGCAAGTCAATCCTGGCGGATTCACTACCCCTGCGCGAAGGCCATCGGTGCCGCATCGAACGGCCGGTTGCGGAAAGTCCTCCCTGCGTCCGCTGATGGCCGGCAGCAGCCCGTCGTTGCCTGATGGATCCAACCCCTCCGCTGCTATAGTGCAGTCGGCTTCTGACGTTCAGTGCAGCCGTCTTCTGAAAACGACAGCGATGGTGGACAT # Right flank : ACTGGTTGCAGCTAAACCGGAAGGGCCGCTGACTGCAGGTTCATTCCACTCCAAGATCAGTGCAATGCTGGTTATTGAGCTACTGGGTCAACAGCTATTGGAAAATAGGCCAGAGCTGGCGGGAGCTATCTCGGATAGTGCCAAGGCTACGTTGCCTTGGTTGATACAATCGCTAGCGAGGGGAGCATCATCAATACTTGGACACCAGACTGGATCGATGTCCAATGTAATCCATCCGGGTAGTATGTCAGCCAACATCAAATGGCACACTGAGTGGCATACCACAAAAATATAAAAAATTAAAAACCCAACCTAATCAATAGGTTGGGTTTGGTATGTGGCGGAGAGACAGGGATTCGAACCCTGGGTGGCATTGCTGCCACAATTGATTTCGAGTCAATCCCGTTCGGCCACTCCGGCATCTCTCCACGGGGCTTCATTGTTACCGGAGCCGCCTCTGGAAATCAACTTGAATCTCTTTAAAGATCAAACAACTGCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCTCGCTGCCGCACAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //