Array 1 591852-590480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014160.1 Aerococcus sanguinicola strain CCUG43001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 591851 28 100.0 33 ............................ CGCACGGAGAACGTCAAATAAAGAGGGGCTTAT 591790 28 100.0 33 ............................ TCACAGTGGAATGCCGTGTAAGGAACGCCACAG 591729 28 100.0 33 ............................ TCCGGTCATCAAGGACATCGAACCCGTAGACAA 591668 28 100.0 33 ............................ TGTGGCAAGTGGATATTACAGGGGTGACAAAGG 591607 28 100.0 33 ............................ TGGCTACGGCAATTTCAAAGATGGCCCGTAACG 591546 28 100.0 33 ............................ TCAGCTAGACGAGACCACGCAACAATTAAAAGA 591485 28 100.0 33 ............................ TGGCTTTTTTTTGTTTTATGGATTTCAAATCCA 591424 28 100.0 33 ............................ CCTCATCTTCCACTTGTCCTAAAACTTCGAAAG 591363 28 100.0 33 ............................ TACTGGTATTTTTCTTTCTTTCCGGTCTCTTTG 591302 28 100.0 33 ............................ CACACGTTATAATGTATATAGAAAGTTAAAGAA 591241 28 100.0 33 ............................ CGCTCAAAAAGTTAGCCGAAGCACTGGACGCAG 591180 28 100.0 33 ............................ TAAATGTTGTAAGCGGAAAGGAAAACCTTGCTA 591119 28 100.0 33 ............................ TGATGTCTTCGCTATCGTCAAAGATTTCTGATT 591058 28 100.0 33 ............................ TGTAGGAGATAATCCATCTTTGGAATAGACTCT 590997 28 100.0 33 ............................ CCGTTTGGCCCCACTGGTCGACATGATGTTCGC 590936 28 100.0 33 ............................ CTGTTTGTATCATCTTCGGTCACCCATTTAATC 590875 28 100.0 33 ............................ CCGATTACGAAAATGAACGAAGGAGTTAAGGAG 590814 28 100.0 33 ............................ CATACCCTTGAACCTTATTTGGTTCTAAATCCT 590753 28 100.0 33 ............................ CCAACTTATTTTTTGAACGTTCTACCACATCTA 590692 28 96.4 35 ...........................T TGCTGAGTAGATAGTTAAAGGTAATCTGAACAGAA 590629 28 100.0 33 ............................ CTGTTATGCGCGGTATACAAAGAAGGATACTAC 590568 28 100.0 33 ............................ TATGCTAGCCGCCTACCCAGCCTTATTTTATTT 590507 28 75.0 0 .................A.A...TCCTT | ========== ====== ====== ====== ============================ =================================== ================== 23 28 98.8 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTATCCAACAAATCATTCGCTTTGGCTTGATCGGAGTCCTTGCCACAGTGATTGACTTCGCTCTATTAACGGCCCTCACCGAATGGGGCTATGTTCACTACCTATTATCAGCGGGAATTGCTTTTGTTGTCGCTACGATTTTTAATTATCTTGCTAGCATGCGCTATGTTTTCGTGAGTCGTTTCTCTAAAGAAGAGCGGCTTCAGGAATTACTCCTGTTTGTTAGCCTGTCAGTGGTAGGTTTGATTCTCAACCAGTTCTTTATGTGGGCCTTCGTCGAGAAACTTGGCATCTATTATCTCCTAGCCAAAGTCCTAGCTACCTTCCTTGTGATGGCGTGGAACTTTATCTCAAGAAAATTATGGATTGAATAAGGCATGAGGTTATCACTGGTTAAAGTGACCGAGATGGCTTATAGTAGCTATAGGGGATTTTTTTAAAGTGAATGAAAATGGCCGAGGGATCAAAAAAGAAGCCTGATTTGATGGGATTTCTTTAGT # Right flank : TACTCAGTTAGAAAATCAAGGACATAATTATTACTAACTCTTTTCCGCCTAGACGGATACTTTTACTTCAGCCCAGATGAAAGCAATATTCCTTTTTTGATAATATTTCCCGATATCCCGAGGGCTATCACTCAGGGGAAGGATATAGTCGACGCGCTTTATATGGCCAGTGATTGTCTGGGGATCCATTTGGCAGATGCTTTAGAGCGTGGGCAAGCTTTGCCTGAGCCAAGTTCGATGTCTTCCTTGTCTTTAGATGATTTCCTTCCAGATGATGATGATTTCCATTTTGAGCGCAACCAATCCTTTATTTCTATGGTTTTAGTCGATCTCGATGATTATACCAGCAATTAAATCAGCTTTTCTAATCAGAAGCGAAGAGCTTTTATTTTAAAGCGTCCAAACTTTTGATACAATAAGATTAAAATAAGTAAGTGAAGGATGATATTATGGCCGGAAAAGTACGTGCAGCTTTGACCCATGCTCAAAATACCCAACTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1264419-1265912 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014160.1 Aerococcus sanguinicola strain CCUG43001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1264419 29 100.0 32 ............................. CAGCGTGTTTTCTGGGTACTTGATAGGGGTTC 1264480 29 100.0 32 ............................. CACGGCCTAGGGACGCGCTATCCCCTTGTGCA 1264541 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 1264602 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 1264663 29 100.0 32 ............................. CTTTTCGTTTCCGATGTTTATCTTTAAGGCAC 1264724 29 100.0 32 ............................. ACTTACTACTATTGTTACTAACTGGAAGCATA 1264785 29 100.0 32 ............................. TCGCTTAACTAAGTTCGTTTGATTATCAGTAA 1264846 29 96.6 32 ............................C ACAAAGTCTTCATCAGCAAATAGATCATACCC 1264907 29 96.6 32 ............................C TAGACCGGGCGACTTCAAACATGCTTTACATG 1264968 29 96.6 32 ............................C TTCAGGGAAGCTTGTCATCTCATTTAATGACT 1265029 29 100.0 32 ............................. CGATTTGTGGATGTGATTAATGATTTGCTGGT 1265090 29 100.0 32 ............................. CATCGAGCCAGAGAGGATGTCCTTTTTTCTAT 1265151 29 89.7 32 ..........................TAG ATCCATAAGCTCCCTCATTTCTTTGGACAGAT 1265212 29 100.0 32 ............................. ACTGGGGCAGTCATTAAACAGGGCGACACCAC 1265273 29 93.1 32 ...T........................C TACGGCCTCAATATCAACTGGGGCGGGTCCTG 1265334 29 96.6 32 ............................A AGTTCCTGATGACTTGAATGAATATGTGTTAG 1265395 29 96.6 32 ..............C.............. CTAATTGAAATGTGATAAAGCTCCCGACCAGT 1265456 29 96.6 32 ............C................ CCCGAACATCTGCGAAGCGGTCGCCTCGTAGA 1265517 29 93.1 32 ............C...............C GCCCTCCAGTCGTGGTGGATAAGTACGCCAAT 1265578 29 93.1 32 ............C...............C GGAGAATTAGGCCTGATGCACCTAAAGAAGTT 1265639 29 93.1 32 ............C...............C AACTACTTTGGCATGAAGGCTAGCCCCAGTTG 1265700 29 96.6 32 ............C................ GACGGCCACTATAGCTATGATATTGCGATTTT 1265761 29 93.1 32 ............C...............C TCGTCCTCCTTAATTGCTCGATTGGCAACTAC 1265822 29 96.6 32 ............C................ ATATAAGCATAAAGTTCATAAAACGTGAACTT 1265883 29 100.0 0 ............................. | G [1265900] ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.1 32 CTTCTTCCCGCATATGCGGGGGTGATCCT # Left flank : GATCCTAAAAAAGATCAAATGATCGAAATAGGCGCTTTAAAGATAGATGGGTCAGAAGAGAACATCTTTCATTCTCTGATCGCTAATAAGAAAATCCCTGAGCAAATTCAAAAACTAACAGGGATTAGCCAGAAAGACATAGATGAAGACGGTAAAGATGAATCGCAAGTACTTGCAAAGCTTCTCGAATTTATCGAAGGTCAGGTTATTGTCGGTTACAATATCAATTTTGATATTAGTTTTATTAATGAGCAATTGAAAAAGATGGGACAGGAGAATTTATCTAATCCAATTCTTGATTTAAAGACTATTGTCAAAAAGGAGAAGATGTTTCTAAAAAATTTTCAATTGCAAACAGTTTTAGCGAGTTACGGGATCAATAAAAAAGTCCCCCACCGAGCCTTGGAGGATGTTAGATTAATGGCTGAGCTCATTTCTAAAGTGAATAAATTTCCAGTTTACTTAAAAAAGAAAGCCCGGTAATACAGGGATCCTTTAGT # Right flank : TATTAGCGTTTACCCTCTAAATATTGCAAATTGTAATATATAATTAAGAAAAGAAGTGAATAAAGGGAGGTATAAATATGTTTCCTGAGATTTTGAAGAGCTACAGAAAATCAAGAGGCTTGACTCAGAAAGAATTGGCGAATAGGCTACACGTTTCTCAACCTACTATCGGGAGTTGGGAAGTTGGCAGGACGGAGCCTAACCAAGAAATGCAGAAGAAAATAGCCGATTTTTTCGGCATTTCTGTAAATACCCTATTGGGAGTAGATGATAACGATTCGGTTGACTTGAAAGTGTTACTTAAAAATTCAAGCATGACATACGGCGGAAAAGAAATAAGCGATCACGACTTAAAAGTCTTGGAAGGCATAGTGGAATCGCTGCTTGGCGGTGATGAAGGTGGGGATAGATAGCTTAATTTCAGATTTAATCGCTAAATATAATACAAACGATCCTTTTGAGATAGCAGAAAATGAAGGAATACTCTTCTCCTTCTTCCC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATATGCGGGGGTGATCCT # Alternate repeat : CTTCTTCCCGCACATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //