Array 1 225080-226145 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFY01000004.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 96-0578 NODE_4_length_352242_cov_4.2409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 225080 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 225141 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 225202 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 225263 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 225324 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 225385 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 225446 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 225507 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 225569 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 225630 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 225691 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 225752 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 225813 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 225874 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 225935 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 225996 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 226057 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 226118 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 242710-244142 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFY01000004.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 96-0578 NODE_4_length_352242_cov_4.2409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242710 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 242771 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 242832 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 242893 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 242954 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 243015 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 243076 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 243137 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 243198 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 243259 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 243320 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 243381 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 243442 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 243503 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 243564 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 243625 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 243686 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 243747 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 243808 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 243869 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 243930 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 243991 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 244052 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 244113 29 100.0 0 ............................. | A [244140] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //