Array 1 4967-5178 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000596.1 Streptomyces sp. SM12 2445_28212_2950049_101+...1107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4967 29 100.0 32 ............................. CCGTGCACACCCCTCCCCGGACCCCTCCGGCC 5028 29 100.0 32 ............................. GTACGAGGGCTACTGATGGCACCCGCCGCCGA 5089 29 96.6 32 ............................C GGGGGACGTCCTACTGACGTCAGTAGGACGTC 5150 29 86.2 0 ...............T.A....C.....C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTCTTCCCCGCGCACGCGGGGGTGTTCCA # Left flank : ACCCCGAACGGCCCGGCCCTCGCCTTCCCAGCCGCCGACTGGTCGTACTTCGTCACCGCCCTCAAGCACGGACACCTGACGAACTGAGCACCACCGCAGCCGGGGCTCCGCCGAACCACCACCGAGCGGAGCCCCGGCGCGGGCGACACGTCGCACATTGAGCATCCCGACAGCTACTCCACACACGCGAGGAGCCAAGGCCATGCCCACACCCACCCACCCCACCTGGCGCAAGTCCACCCACAGCGGCCCGGACAACGGTTCCTGCCTCGAAGTCGCAGACGACTCCCCCGCCAGCACACTTCTCCGCGACTCCAAGGCCCCGAACGGCCCGACCCTCGCCTTCCCAGCCGCCGACTGGTCGTCCTTCGTCACCGCCCTCAAGCGGGGCACCCTGACACGCTGAGCATCAGCCCACACCAGCGAGGCCCGAAATGCCGGAGTTTGGCAAAGTAAGTAAAATCCACACCCGCCGCGCCTAACGCCGCAGCTCGCGACCT # Right flank : CGCCAGAAACTACGCCCCCGCGTGCCTGGCCGAGTCTTCGCCGCGTGCGCCGTGCCTCTCCCCCGCTTGCAGCAAGCCGTCCGCGACGAGTGCTCCGGGCCACCTACGATTTTAGTAGGTGGCCGCGAACCTACCTCCGTGGCGGGCAAAGGGAGTTCTCGGGCTCGCATCCCCCCAGGCGAGGTGCCCCCTCGTCTTCTCGCCGCACGCGTTCGGTTCACTCCAGGGCGCGGCGCTCGTTTTCGCCTCCCCCGATTGAGGGTCCGCTGTCACACACCGCGTCACCTGGTCAGCCCAATCGGCGCTCCGACACTGCCCGCAATGCCGGTGAGGTCCCGTAGCCTGCCCAGGGCCAGACGCCAGCCCGCTTTCTCCCCGCGCAGGCGGGTGTACTTCGCCGTGGGTTGCCCTACGGTTGCCCGCGTATGGACCCATACGCGGTTTGCATCTTCCCCGCGCATGCGGGGGCGTTCCCACGCGGACGTCGCCCGACATCGCGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGTTCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21735-22555 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000596.1 Streptomyces sp. SM12 2445_28212_2950049_101+...1107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21735 29 100.0 32 ............................. AAGCTAACAGCAGGTCAGGAGGCGCTGAGCGG 21796 29 100.0 32 ............................. CACACCCGCCGACGCGGCCCCTGTGCACGGTC 21857 29 100.0 32 ............................. CACACCCGCCGACGCGGCCCCTGTGCACGGTC 21918 29 100.0 32 ............................. GTCACCACGGCTCACGACTCGCCGTCGCACGT 21979 29 100.0 32 ............................. AACAAGGGCGGGGCCAAGAAGACCACGCTGAC 22040 29 100.0 32 ............................. GCGATGTGCTGCCCGGCCGGCTCGATGAGGTC 22101 29 100.0 32 ............................. GGGACTCCAAACGGGACTCGAAACAGAACCCC 22162 29 100.0 32 ............................. CAGTCCCACAACACGCGCGCCTGCAGCTGGTC 22223 29 96.6 32 ............................T CGCCCGGGGCGACCTCAAGGCGGGCCGCCGGG 22284 29 100.0 32 ............................. GAGGCCGGCCTCACCCGTGACGCCTTCGACTG 22345 29 100.0 32 ............................. GACGGTGGGCCCGGCAACCGCCGGGCCCACCG 22406 29 100.0 32 ............................. TGCCCTGGCCGCGCCTGCGCCCCGAAGCGGAG 22467 29 100.0 32 ............................. AGCTCGCTCGGCTCCACCTTCAATACCGTCCT 22528 28 79.3 0 .................-......GGGTG | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 CTCCTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : CAGCGCCTCGGCGATCAGCTCCCGAAGGTTCCTCGGCAGCCACTCGTCCCACAACCGCCCCGCCACGGCACCGCTGTCGGCCATGTGCCGCCACAGCGGCAGCCAGGCGTCATCACTCCGGTCATGCTTCGCCCATACCGACCGCGCAGCCGGGGACAACCGCCCCAACGGTGTCTCCCCCGACTCGACAGATGACCGGTGAGCGCCCGATGACACAGACACACTTCACCCCTCGTTGAGAATGCTCAGAACGTGGGGGGTGACGCACAGTGTGCACGATCAGGCTGGGCACGGGAACGAAAACCGGGCAGTTGCGGAATATCCAGATCTGACCGAGGTCGACGTGATAATGGAACGAGCACAGCACCCCGAGTGACATCCACCCGGCCGCGACGCTACGGTGAGCAGATGACGGAGAGGGCGAGGCGTCCGAAATGCCGGAGTTTTGTAAAGTAAGTAAAATCCAGCACCGGCCGACCTAAACCCCCAGCTCACTACCT # Right flank : GTGTTTCAGGACGCCCAGCCAGCAGGTCGGCGGTGGGCTCCTTGCTCTGCTGAGGCCCGGGTTTCTCCGACTACGTGGGTGGGCCGGAACTGTGCTCAGTGGGCCGCCAGTTGTCTATTCTCTCGACAGAGTGAGAGCTGGACTGACAGGCTGAGCCCATGACTTACGGAATTGAGCTCCGCTTCGCCCGATGAGCGCACAGAACGAGCACGATGCGCTCAGTCATCCGCCCGCCCTGTACGACCACGCTCTGCACCTGCTTCGCCAGTCCTCCGGCGGGATCCCGCCTCGGCGTGGCTTCTCTCTCACGCGGGGGCGGGAATCGCGCGAGGCTCCGCTGTCCCGCGCAAAGGCGCACAGCGCCGTACGGGAAGCGCTGAACCCTCTGCCGGACGACTCCGCGACACTGCACGACCGTCTCGCCGGGCTCGGCCTGGGCGATAGCCATGTGCACGTGATTCGGTCTGCCGTCGCCGACCTCCCGCTGCCAGACGATCAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4647-7556 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000719.1 Streptomyces sp. SM12 2589_8060_1489322_965+...746+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 4647 29 100.0 32 ............................. GCCGACCCGGAGCCGGAGCCGACCCCGGAGCC 4708 29 100.0 32 ............................. ATCCTGTCGACCTCGACCACCGAGGGCGCAAG 4769 29 100.0 32 ............................. AACAAGGGCGGGGCCAAGAAGACCACGCTGAC 4830 29 100.0 32 ............................. TGGCCGGGCTGGAGCCCGTCGGTGAGCGAGTC 4891 29 100.0 32 ............................. ACCCTCACCGCCCCCATGGAGGACCCCACCGT 4952 29 100.0 32 ............................. GCGCTGGCCGGCACCCACGCCGCAGCCGTGGA 5013 29 100.0 32 ............................. TGCTGTTGGCCTGACGCCCCCGGCCACCCCAC 5074 29 100.0 32 ............................. GCGCAGGCGTGCCGGGCGATGGCCGACGCGAT 5135 29 100.0 32 ............................. GGCTACCAGGTCGGCCGCACCGGCCAGATCGC 5196 29 100.0 32 ............................. ACCTGGATCACGGAGCTGCCCGTCCAGGTGAT 5257 29 100.0 32 ............................. GCCAGCGCCTTGAGGTGCGCGGACTTCCCGGC 5318 29 100.0 32 ............................. TGGACCCCAAGCCGGTCATCGACCTGGAGCCG 5379 29 100.0 32 ............................. TCGGTGTCGCGCCGCATGTAGGGCAGGTGCTC 5440 29 100.0 32 ............................. GCGGCGGCCCGGGGTGCGGCTTGGGCCCTCCA 5501 29 100.0 43 ............................. GCGGCGGCCGTCTCCAGCCCGGCCCCGGCGAGAGCCGGGACGC 5573 29 96.6 33 ............................A CAGGACTCCGATCTGGTGAGGGAATGGATTACC 5635 29 100.0 32 ............................. GCCCTGTGGGAGGCGGTGACCGGCAAGCCGGG 5696 29 100.0 32 ............................. CCGTGGAGGAATCACTGTGGAACCCATGATGA 5757 29 100.0 32 ............................. GCCACGTGCATGGCGGCAGCGGCGGCGTCCTG 5818 29 100.0 33 ............................. CGCGGGCGTGGTGGGGAATCGAAGACCTCGCGG 5880 29 100.0 32 ............................. TCCGTGACCCACGCGGCGAACTGGGCGGCGGC 5941 29 100.0 32 ............................. GTGCCGCCCCGGCCCCGTCCGCGCGGGTCGAA 6002 29 100.0 32 ............................. TTCCCCCCACGACCGGGGTAGAGGCGATGCAC 6063 29 100.0 32 ............................. TTGGACAAGGTCGCCGTCCTCGGCGGCCGGGC 6124 29 100.0 32 ............................. TCGCGCGCCGCCCACCTATACGACCCCCGGAT 6185 29 100.0 32 ............................. GTTCGGCGCGGTGTGGGCGGTGCTCTCCGTCG 6246 29 100.0 32 ............................. TCCGCGCCACCTGGACCCAGATCGCCGCCGCC 6307 29 100.0 32 ............................. AGCGTTCGGGAGCGGGCGTCGGCCAGCTCTCG 6368 29 100.0 32 ............................. GGAGGCCGCCCCGGCGCCGTCGTCCTCGGGAC 6429 29 100.0 32 ............................. GGGCGACGAGGACGCCGACCGCGTCGAGCTGC 6490 29 100.0 32 ............................. AGTGCGGCGGCCGTGGCGAGTTCTTCGGGACG 6551 29 100.0 32 ............................. CGCACACGCGGGTCGGGGGCGGCCACGGCCGC 6612 29 100.0 32 ............................. AACGACTCCCGCGCGGCGACAACCTGCCCGGT 6673 29 100.0 32 ............................. GGGGACCTCCGAGAAGGAGCGGGTGGCGTAGA 6734 29 100.0 32 ............................. GGGCTGATGACGGACATGCAGGCTCGCGGCAC 6795 29 100.0 32 ............................. GTTGGACAGCCACTGGCCAACGGACCGCTCCA 6856 29 100.0 32 ............................. TGGCCGCGACGCACGGGGTGTCGCCGGGCACG 6917 29 100.0 32 ............................. TGCTGCCCGAGCGTCTTCCTCGGGGAGCTTCG 6978 29 100.0 32 ............................. GCCGCGAGCGGGATGCCCGTGAGCACGAGGCA 7039 29 100.0 32 ............................. CTGGCGACCCGCCGGCTCGTCCCGCTCAACCC 7100 29 100.0 32 ............................. CTTGGCATAGCTATGCCAAGGTTGCGGCGAGT 7161 29 100.0 32 ............................. TTGGCGCTGTCGTGGACGACGCCGAGGTTGAC 7222 29 100.0 32 ............................. ATGCCCTTCTGGATGGCCCACTCCAGAGGCCA 7283 29 100.0 32 ............................. TCGCCATCTACATCGGCGCTCTCACCCAAACC 7344 29 100.0 32 ............................. AGCACCGCCCGCGCCGCCGCGCAGAGGGTCTA 7405 29 100.0 32 ............................. CCTGGGAATTCGGTCTGAATTATGGGAAAAAT 7466 29 100.0 32 ............................. GCCGCCGCCAACGGTGTTTGCCCTGTTCAGTC 7527 29 89.7 0 .........................GAG. | G [7544] ========== ====== ====== ====== ============================= =========================================== ================== 48 29 99.7 32 CTCCTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : ATGGGACAGCAGCAACACCGCCGCCAGAAAACCGACCACCGGCGCCAACCGCTGCGTCTCCGCCCACGCCTCGGTCGGTGAGACCGCACCGACCAGCATCAGCAGCCCGGCGGCCGGAACCGCAGCCGCGGCCTCCGGCCAACGCCGGGGCCGAATGATCACAAACGCGAGCACCGACAGCAGCACAGCGACAGACAGCACTTCGGCGGCGACATCGGACACGTGACGGGCTCCGGGGGCACGGACGGACAGGAACGGCGGACACGCCGCACACCGCGCGGCACGGCCACGCGACCGCCAGCATCCCACCCCCACCCCGCCCCACCACCGCGCCGGGCCGTCACACCGGCCCCCGACACCCCGACGTGGCCCACCCCGCGCCGGCGAGCGGTAACCTCAGGACCCCGGACCCTGCACCACCGACAAGGACCGATATGCCGGAGTTTGGCAAAGTAAGTAAAATCCGCCACCCCCGCACCTAACGCCGCAGCTCACGACCT # Right flank : CTGCACTGATCTTCGTGGAGTCCCTGAAGCCTGGGTTACGCTTCCAGGCGTAAGGAGAACCACGAGCTGTGCCAGCACCACGTAAGTACCCCGATGAACTCCGTGAGCGCGCGATCCGCGAGGTCCGCTCGACCGGACGCCCGATCGCGCACGTTGCCCGCGATCTCGGCATCCACAAGGAGGCACTGCGCGGCTGGGTCCGCCAGGCCGAGGCGGACGCCGGTGAACGCGACGACCGGCTGACGACTACCGAGCGCGACGAGTTGAAGGAACTCCGCAAGGAGAACGCCGAGTTGAGGCGGGCCAACGAGATCCTGAAGGCCGCCTCGGTGTTTTTTACCCAGGAGATCGACCGTCCCCGGACGAGGCCGAGCAGGTGATCGACCACCTGCGCGACAAGGTTCTTCGTCGCGGAGCCGGCGGGCCGACTTCGGCCGCGTCCTGCGCGCGAAGTACGTCGACGGCGACAGCTCCAGCACCCGACAGACGGGATCGACCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1936-2293 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000734.1 Streptomyces sp. SM12 2607_4389_1339474_1019+...2070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1936 32 100.0 32 ................................ ATGTCGCGGGGCTCGATACCCCGCTGGGGGTG 2000 32 100.0 36 ................................ GCATACGAGAAGGTGGCCGCCTCGCTCAAGGGCCTC 2068 32 96.9 33 .C.............................. CTGAGCAGGCGCAGCCGCTCGGGGTCGACCCGG 2133 32 96.9 32 .T.............................. CTTGCCCTTCCGCGCGGTGGTCTGGTGGGTGG 2197 32 100.0 34 ................................ AGGCGTCCGGCGTATGCCTCTCCGGCGGCGTCGT 2263 31 84.4 0 ........................-CG...TT | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.4 34 GGGTCCTCATCGCCCCTTCGAGGGGTAGCAAC # Left flank : CACGGCATGGGCACCGAGATCTGCCGACCCGGCTTCCGTGGCTGCCCGTTCATCAACGCCGCAGCCGAGTACGCCGACCCCGACCAGCCCGTCCGCCGGCTCGTCGCCACCCACCGGGAATGGTTCATCGGCCAACTCCGCGAACTCCTCACGGCCGCCGGGATCGCCCACCCCGAACCGGCCGCACAGGAACTGATGATGCTGCGCGACGGCGCCGCCATCGCCGGCTACCTCGGCGACCCCACCACCGTCGCCAACGCCCTCGAACGCGCCGCCCTCGCCATCATCACCGCACACCGCTGACCCGCCCACCGGCCCGCCACTACGCTGACGGCCGACACGAACCACCCGATCCGCCCACCGGGCAGGCCGATCCGCCGTAGCCTGGAACACCGGAATTTCAGCAACTCTCCGGGGTTTCCCGCACTACCGGAGGTCCGCTGAAAAACCACCCCCACACCTGGGTCACCGCACCCGCCGCGACCTGGACCTTCACAATG # Right flank : TTGGAACATCCAGTGGTGATGTCTCAGGTGCTGCCAGCCTCTCCGCTTCTGGGCGGACGCGGCGCCTCACGTTGCGTGAGCAGTGGCTGCCTGCCTCACCAGCCCGGACGGCGGGTCTGTCAACGGTCATTGAGATGTCCAGGTAGGTGGCCGTGGGGTGTCCAGGCTGGTGGCCAGCAGAAACCCAGGCGTGTGGCCGGTGGTGTTCCCGGGTGGGTCAGTTCAACGGGACCACTCCTTTCCCGGCGAGGGCCTCGGCGAGGCGGTGTGAGTCGCCGGTGGTGGTCACGAGGTGAGCGTGGTGCATGAGGCGGTCGGTGCTCGCGCCTGCGAGGGTCTTGGGCATGATCGTGTCGAAACCCGAGGGGTGGATGTTGCTGGTGACCGCGATGGATCGGCGCTCGTAGGCGGCATCGATGATGCGGTAGAACGCCTCCGCGGCGTCCTCGCCGACCGGTAGCAGTCCGATGTCGTCGATGACGATGAGATCGGCCCGGCAG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTCCTCATCGCCCCTTCGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4123-2568 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000840.1 Streptomyces sp. SM12 2739_16965_1181548_2208+269+1447+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4122 29 100.0 32 ............................. AGGCACGCGAGGGGCGGTCAGCTTGATTGCTT 4061 29 100.0 32 ............................. GCCAACACCTTCCGCGCGCTGTACAAGTACGC 4000 29 100.0 32 ............................. TTGCGGCCCTCATTACCCTCGCCCTCACTGCG 3939 29 100.0 32 ............................. CTGCTGTCGAACGTGGAGACAGTTAGTGGCAG 3878 29 100.0 32 ............................. GGCGCCCGGAACTCCTGCAGTCGGCTCGCCAG 3817 29 100.0 32 ............................. CCGTGGCGGTTCGGCCAGCAACTCGCCCAGGC 3756 29 100.0 32 ............................. GCGGGGAACGAGTTGCGGGCGCCGCTGCCGCT 3695 29 100.0 32 ............................. TTCGTGATCGCCGCTTCTGCCGTTGTGGCCGG 3634 29 100.0 32 ............................. GCACAGCGTGGGGTCAGCCAGTCGGCCGTCCT 3573 29 100.0 32 ............................. AGATCTGCAGAGGGACGCCACGACAGCGAGGT 3512 29 100.0 32 ............................. CGGGGGGCCAGGAAGTTCGCCGCGCTCAACGC 3451 29 96.6 32 ............................T GGTGTTCTTAGGGGGGCGATTCTCCACCGGTG 3390 29 100.0 32 ............................. GGGGGGCGCTCTGTCGAGGGGCGCCCCCGCAC 3329 29 100.0 32 ............................. GCACCGACCTCCATCACCCTGGACTGGGATGC 3268 29 100.0 32 ............................. GGGGTGCCGCTGGCCGAGCCGGGCGGGCAGCG 3207 29 100.0 32 ............................. GGAGATCGGGAGCACCGAGGGCTTCCTCCGCT 3146 29 96.6 32 ............................T CAGCCTGGTTCGGAGACCTCAGCGGCCCCGGG G [3129] 3084 29 93.1 32 ......................A.....G CCGGGCGGGACGCCGGCCGCGGCGCCTTCCGG 3023 29 100.0 32 ............................. AGGTGGCCCACGCGCAGATGAGGTACGTGCCG 2962 29 100.0 32 ............................. AGCCCGGCGAAGGCCAGGAGGTCGACGGACCT 2901 29 100.0 32 ............................. GTCGCGGTGACGGTCCACGCCATGCCGGTCTT 2840 29 100.0 32 ............................. CATCGAGCGCAACGTGCTCGACCCGCTCCAAG 2779 29 100.0 32 ............................. GGCACGATCATGCCGTGGACGGCACTGAGCGA 2718 29 100.0 32 ............................. GGCACCGACTGGGCCACCCACACCATGGACTT 2657 29 100.0 32 ............................. GTACCGGCCGCGCGGGTCACGGCCCGGGGCTG 2596 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 CTCCTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : GTCCGTGACACCTGCCCCGCACCTCGCCGGGGCGCCACTGCACCTGCTGCGCCGCCGCCTCCACCAGGCCGCCGCCGGAGGACGCGCGCTACTGACCCCGCCCCCCGGCAACGACCCCCGCACCCTGCGCGACCACGCCCTGCCCACAGCCGCCGCCCTCCTGGACAACCTCCACCGCACCGCCGCCGACCGCACCCGGGACACCTTCGGCCGCCTCCGCGCCACCGACCCCGAACGCTTCGCCCGCGCCTGGCTGGCCACCGCGCTCTACACCGACGAACTCGACCACGCACTGTGCGCCGCCGCCTGGAGCGCCGGACCGCCCGTGCCCGCGCCGCGATGACGAACGACCGCCTGCGGCTTGGCAGTCGAGCCGCTGTCATGAGGAATACTGGAAGTGGTGAGGCAGGCGTCTCACCGCCAGGACGGGTGAAATGTCGGAGTTTTGTAAAGTGAGTAAAATCCAGCTACTCGCCAGCTAAACCCCCAGCTCACGCCCT # Right flank : CGATCACTGCCTGCGCTTACGGGCAGCACATCCCAGGACAGGGGGCGCGATGACGCGCGACCGGGCACGACTCTGGCTCATGAGTACCGACGACCAGGGAGCAGCCAGCGGCTACCTCCACGAGCTTGCGGCAGCGCTCCGCCAGGTTGGGCTGACGAAGCGCTACGGCGTCACGATGACGACATGCGCGGTGGGCGGCTGGGTCGTGTACCTCGTGGACCGGCAGTACGGGTGCCCGCCACCGCCGACAGTGTGCCGCCCCCGCCGTCGGCGGTGCGGATCGCCGAGCTTGTTTCTCTGGAACGATCGGGGCTGACCGCACCGAGAAGCCCCACCGTGCGCAACATGCACGGTGGGGCTTCGGTCGGCTTCGCGGCGCGCGCTCAGCCGGTGAACTCCCCGGCCTTGACGCCGGACACGAACGCGGCGAACGCTCCGGCCGGGACCGCAAGGGCCGGACCGGCCGGGTCCTTGGAGTCGCGGACGGGGACCGTGCCGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5246-4150 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000696.1 Streptomyces sp. SM12 2565_20675_4016221_815+...1635+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 5245 30 100.0 37 .............................. ACGACGTTCTCCACGATGACGGTCCTGTACCTGTGGT 5178 30 100.0 37 .............................. GGGTGCTTCTCGGTGGCGGACCTGAGGCCGGTGAGGC 5111 30 100.0 36 .............................. GTGTCGGCGGCGGGTGCGGTGGCCTCCGCCTGGCCC 5045 30 100.0 37 .............................. GCGGCTGGACGGCGAGGATGCGCCGCAGACGGCCCCA 4978 30 100.0 37 .............................. CGACCTTCGAGAGGCTGTCGCCAGACTTCACCTTGTA 4911 30 100.0 39 .............................. CTGAGCGCCCGGACCATCGGCTCCGGGCGGGCGCGGCCG 4842 30 100.0 37 .............................. ACCATTCCGGCCTGGAGAGCCATCTCGATGTCGAACA 4775 30 100.0 36 .............................. GCGGGCGTCATCGCGATCGGCTTGGACGGCGCGGTG 4709 30 100.0 36 .............................. GCGGGTGCGGGCCCGGTGGCGATGCCGGCCTGCTGG 4643 30 100.0 36 .............................. CGGGTGATGGTGTACGAGCCGTAGCCCATGTCGGTC 4577 30 100.0 36 .............................. CCCTGATTGAGCACGTGTGGCGCCCCGGTAGCGACT 4511 30 100.0 39 .............................. GGGGCGGTGCCGGTGGGCTCCAGCGTCGGCACGCCGGAG 4442 30 100.0 37 .............................. CCGGCAAGGAGGCGGGCGACAAGGCCGCCCAGGAGAA 4375 30 96.7 36 .................A............ AGCGACGGACGGGTGGGACCCCCGGCCGTCGCGGTG 4309 30 96.7 35 .........................G.... CGGAGCTGCGGGGCGACCTGAAAGCAGCGCTCCAG 4244 30 96.7 36 .........................G.... GAGCCGAAGGTGAGCGCGGCGGTGACGGCAACCGTG 4178 29 73.3 0 .C.....C.....-.........CCGG..G | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 97.8 37 GTCCTCATCGCCCCTGCGAGGGGTACCAAC # Left flank : CACGGGCACGGCCATCGGTGAATTCCGGGGAGTTCACCAACGAGGAACCCCTGCCATCACTACTCCAACAGCGCCTCGAAAAAAGCAGAGTTAGCGATCCAGAACTCAGTGCTCCCGCTGCTGCGGACCACTACCGTCTGACCCACAACGGAACACGCCCGCATCACGACCCCGTCACCTTCGCCGGACGAAACATTGACCGTCACCTTCTCCGAGCACCGTGGCGGCTCCGTCCGCGCTCTTGGCGACGCGGGCACCGTCGATACAACGCGCCCCTCGCCGCTTCCCTCCTTCGACTCACCGTTGGCCGTCCGCCCACCGGTACGATGACAAGCGAGCCCGAACCAACGATCCGGCCCCCGGACAGGCCGGTCCGCCGTAGCCTGATCCCCGGGATTTCAGCAACTCTCCGGGGTTTTCCGCACTACCGGAGGTCCGCTGAAAAACCGCCCCCGCACCCCCGTCACCACACCCACCCTGACCTGGACCTTCACCATGGG # Right flank : CCGGGTGGCCGCCAGCCCGATCAGTGACGGACCCGGTGACGGCACGCGAGTCACGTCACGGGCGGGCAGGGACGGCGCGGGGCAGTTCGGTTTCGAGGCAGGTGCGGAAGGTGCGGGCGGGGCGGCCGGTGACGCGCTGGACGGTGTCGGTGACGCGGTCCTCGGCTCCTTCCGAGATGGCGGCGTCGAGGTCGGCCAGCATCGCGGCGAACTCCAAGGGCATCTGCTCGGCGAGGCGGTCACGGAACTGTGCGTTGGTGAGGCGCTGGTGGACCACGGGCCGGCCGGTGGTCTCGGCGACGATGGTGGCGATGTCGTCGTAGCTGAGGGCCTGCGGTCCGGTGAGGACGAGGTCGGTGTTGAGGGCGTGTTCGGCGGTCAGGGCGTGGACGGCGACGGCCGCGATGTCCTCGGCGTCGACGAAGCCGACCCGGCCGTTCCCGGTGGCGGTCCGGATGACGCCCTCGTCGCGGATGCTCGCGGCGTGCATGTGCGTGCCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 7890-7195 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000696.1 Streptomyces sp. SM12 2565_20675_4016221_815+...1635+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 7889 30 100.0 37 .............................. AGAGCTCGAAGAAGGTGAAGCCGTGGCGGGAGCGCGT 7822 30 100.0 40 .............................. CCCTGGTGGCGACCGGCGAGGGCCGCCCCCCGGCACAAGT 7752 30 100.0 37 .............................. ATGAGCGCGCACGACGAACCGCCATGGTCGCGCACGC 7685 30 100.0 35 .............................. CGCCCGGTTCGGCGTCAGTCGAGCTGGATTAGCCC 7620 30 100.0 36 .............................. TCGCGCGGGCAACGCTGACGGACCCGGGCGACCCGC 7554 30 96.7 36 ...............G.............. TGGTGCTCTGCGGTGATGGCGGCGGCCGGGCCGGTG 7488 30 100.0 36 .............................. CTCCGACGCCGGGGACGCTGGCGCACATCGACCACC 7422 30 100.0 34 .............................. CGCCACCACATCAGCGCGTACACGGTGATGGCCG 7358 30 100.0 37 .............................. GCCGTGATGATGCTGGTGTTCAGGATGGCGAGCGCCA 7291 30 100.0 37 .............................. GGGTCCGCCCAGACGTGGATGCGTGAGAACCCCGCGA 7224 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 99.4 37 GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Left flank : CCGCACGCTCAAGCGGTCCGTGGCCTACGACGAACTGCTCTACCTGGACGCCCTCTCACTCGCCCGGCACTGCCTGGAGGGCACCCCGTACAAGCCGTTCCGGATCTGGTGGTGAGCGACGGATGCACGTTGTCGTCGTCTACGACACCGACGCCGATCGCAACGCGGCGATCCTGCGCACCTGCCGCAAGTACCTGCACCACGTGCAGCGCAGCGTCTTCGAGGGCCAGCTGAGCCCGGCGCAGATGCGCCGCTTCCAGTTCGAGGTGGAGTCCGTCCTCGACCTCACCTACGACAACGTCCTCGTCTACACCTTCCCACCGGGCACGACCCCGGTCCGGCTGGAATGGGGAGCGGTCCAGACGATGCCGACGGACATTCTCTGAACACCCGGACTTCAGCAACTCTCCGGGGTTTCCCGCACTACCGGAGGTCCGCTGAAAAACCACCCCCCACACCCCCGTCGACACACCCACCCTGACCTGGACCTTCACCATGGG # Right flank : AACACGACGACACACGTGAGCGCCCTGCCGGTTCGTGGTGAACCGGCAGGGCGCTGGGACGAGGCGTCTCAGGCTTCGCTCAGGGTCTCGTTCGCGATGGCGGTGACGAAGGGCGCCCACGCCTCGGTGCGCACAACGAGCGCGGGCCCAGCGGACACCTTGGAGTCCCGGACGGGCAGAACACCGGGGTACCCGTCGGCCACCTCGACGCACGAGCCGCCGTCAGCGTTGCTGTAGCTGGACTTGCGCCAAGCGGCTGCGGTCAGGTCGATTCGGGATCGCATGGCAGGTCCTCCGCAAGGTCGGTGATGAGCTGACGTGATTCAGTTGGGGACAACGCGTGATCGCGGATCCGATCGTAACTGAGCTGCAGTCGCTCCACGGCGGCGGTTTCCTCGACCAACTCGCTGGAGTGGCTGGTCTCCACCCACGCGACCGTTCGACCTTCCGGTAGCCGAAGGAAGTCGATGTAGGTGTTGGACAGGGCGTGAGGCCCGGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : GTCCTCATCGCCCCTGCGAGGGGTAGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 18460-17453 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000874.1 Streptomyces sp. SM12 2779_20090_1763876_178+...2030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18459 29 100.0 32 ............................. CCGAACGTGGCCGGGGCGGGGGCGGGGCGGGT 18398 29 100.0 32 ............................. AACAGGGCGCGGGTGCGCCCGACGGGGACGAC 18337 29 100.0 32 ............................. GTCCTTGCGGCGATCGGCTTCCTCCCGCCACT 18276 29 100.0 32 ............................. GGGGAATTGCTACTCCCGCTCCCCCCGCCATG 18215 29 100.0 32 ............................. GGACGGCGTGCGGAGCGCGGCGACCAGGGCCG 18154 29 100.0 33 ............................. ACGCTCATGGCTTCACCAGCCAATCGGTATCCG 18092 29 100.0 32 ............................. TCGGGGAACGAGTTGCGGGCGCCGCTGCCGCT 18031 29 100.0 32 ............................. GCCTACCGCGCGCTGCTGCGGATCAGCAAGGA 17970 29 100.0 32 ............................. ACGCCGTCACTACCACCGCCTGTAGTACTTGT 17909 29 100.0 32 ............................. AGTGCGAGGAGGTTCCTCACCGCTCGGTGCGG 17848 29 100.0 32 ............................. CGGTCACCCGCGCCCACAGCTGGGTCAGGGTC 17787 29 100.0 32 ............................. TACGCGCTCATGGAATCCATACGACCCGGCCG 17726 29 100.0 32 ............................. CAGGCACGGCCGTACTCCGTGGCGGACAGGCC 17665 29 100.0 32 ............................. AGGTAGGCGCCGCGGCGACCGAGCCGCCGCCG 17604 29 100.0 32 ............................. GCGAGCGACCACAAGAGCGGCGGCAGCATGGC 17543 29 96.6 32 ...........................T. GTCCCATACGTCGCGGCCTGCTCATCGCTCAG 17482 29 86.2 0 .G..........TG......T........ | T [17456] ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.0 32 CTCTTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : TGCTCCACCCCCAGCTGCCGCCCGCCCGCCGTGTCCAGTACCGGCGGCACCTCCCGGTCGGCGCCACGCTGCTGCTGTACACCGACGGACTGGTGGAGCGGCGCGCCGGCGCCGACATGGACGCCTGCACGGAACTGGCGGGCGCCCTGCTGGCGGCCGGCGTCAGTGACGGCCGCCCGCTGGACGTGCTGCTCCAGGACATCGTGGACGGCGTGGCCGGGCCGTCCCCGACGGACGACGTCGCCCTCCTCGCCCTCCGCGTCACCGCCGGCTCCGACTGCTCCGACGGGTCCGACGGCTGAGCGGCGGGGACGCCCGGCACCACCGTGTCCGAGGTGCGATGGTGCACGCCTTGCGTGAACTGCACAGCCCGCCGGTCGTGGTGAGGAATACTGGAAGTGGTGAGGCGGTGTCTAACCGACGGGATGGGTGAAATGTCGGAGTTTTGTAAAGTAAGTAAAATCCAGTTACTCGTCAGTTAAGACTCCAGGTCACGACCT # Right flank : CGGCTGTCGCGTCGTCCCACCTGCCTTCTCGTCGCGTGTGGGTCTACGTCCGGGGCCGGGGTGGTGTGGGGCGGGTGATGGTGAGGTGGGTGGTGGGTTTGAGGGTGAGGCGGGTGTCGGTGTCGAGTTCGAGGCGGGTGAGGCCGCCTCGGTGTTCGGCGAAGGTGACGCGGGTGGTGGCGCCGCCGAGGGTGAGGTAGTCGCCGATGCGGATGTGGTCGGCGGGGAGGCGGAGGGCGTGGGCGCGGAGGTGGGTCATGGCCGGCGGGTCACCGACTTGGCGGCCGGGTGCTGCCGCAGGGCGTTGTTGAGGGTGGTGATGTCGTCGTGGGTGAGGTTGCCGAGGTGGACGAGGTAGGCGGGGCGGCGGCAGCCGTCGCAGGGGTCGAGGACGTCGATGTCGTCCAGGCGGACGCCGAGGTCCTTGATGTGGTTGAAGAACTCTCGTGCGGCGTCTTCGAGTTCTTCGCGGTCGGAGTTGGCGAAGCTGATGTCTTCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13195-13709 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000889.1 Streptomyces sp. SM12 2797_20048_1858499_1260+139N2590+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 13195 29 69.0 90 AGC.C............A..C...C.G.T ATCCGACGCCTCTGGCAAGATGTCGGAATGACCCGCTCGACCCATGGCAAAGGAACTGCAAAGCCCTCCTAACGCACCAGGTCGCGAAGG 13314 29 100.0 32 ............................. GTCTGCGAGCAGTTCCGCGTCGCCCAAACGAC 13375 29 100.0 32 ............................. TCGTCCTGCGGCTGCCGCCGCTTGGCCTCGAC 13436 29 100.0 32 ............................. TTGTTGAACCGGGCGTAGTGCAGCTGGCTGGC 13497 29 100.0 32 ............................. TGGCGGACGTCGTCCGCGCTGAGCGGGCGCAT 13558 29 96.6 33 .........................C... TAGCGGACGCGGCCGGATTCGGTGAGAATCCGG 13620 29 100.0 32 ............................. CGCAGCACGCTGCTGGGGTCCAGGTGGGACGA 13681 29 82.8 0 ...C.................CC..A..T | ========== ====== ====== ====== ============================= ========================================================================================== ================== 8 29 93.5 41 GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : TCTCCAGCACGTGGTCCCCGGGGCGCGGATCGAGGCGCCGCAGAAAGGCCACCACCAGCGGGGGGCTCGTCGAGGAACTGGTCGGGGCGCGGGTCAGGGCCGCGTTGCCCTCGGTCAGTTCGGTTCGCCCGTCGTCGAGTTGGGTGTAGATCGCCGCGCTGGAGGAGACGGCACGCCACCAGCCGTCCGCGTCGTTCTCGCGGTCGATCCACCGGGCCGGGCCGGCCGCACTGGCCGCGGCCCAGGCGCGTGGCGGCACGAAGGCGTGCCGTGGCACCTCGATCAGCGCCTGCGCCAGACAGGGCGCCCCGCGCTCCGTCGTCACGACCGCCCCTCCCGCTCGTCGCGTCACGAATGCCCGCGCCGCGGGCGTCCGTTCATGATGCCCATCGGAACGGCCACTCATCCCCGGAACGCAACCGTGCGCCCCCACCGAGCATCACCCGCCCCGTCATGCTCGTCGTGGTCCTGCGAGTGGGCCACTGACCGCCGCTATCCAC # Right flank : TCTCCTAGCCGGCGCGCTGGGACATGGCTGAACGCGCCGCGCGGGGTGTGATCGTCCGGCGGGACGGTCACACCCCGCGCGGCGGGAGCACGGCGGGCGGGTGAGCGGATCAGCCCTTGACCGCTCCCGAGGTGAGGCCGGCCGCCATCTTCTTCTGCACGATCATGAAGAAGATCACCACCGGCAGCGCGATCAGCACCGAAGCGGCCATCAGTGAACCGAAGTTGGTACCGCGCTGGGTGGTCATGCTCATCACCCACACCGGCAGCGTCCAGCGTTCGTTGTCCTGCATGATCACGTAGGCGAGCAGGTACTCGTTCCAGGTGTTGACCAGGGCGAAGACCGAGGTCGCGGCGAGTCCGGGGCCGATCAGCGGGAACACCACCCGCCAGAACGCCCCCATCCGGGTGCAGCCGTCCACCATCGCCGACTCCTCCAGTTCCCTGGGGATGTTGATGATGAATCCCCGGAGCATCCACACCGTGAACGGCAGCGCCGAG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.69, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11986-12347 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEUD01000894.1 Streptomyces sp. SM12 2802_18174_2403378_1672105N2641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11986 30 100.0 37 .............................. ATGTGGGCGACCCGGCACGAGGAGGACTTCCCGCAGG 12053 30 100.0 36 .............................. GTGACCAGCAGCAGCCAAGACCTGTCAGCCGCGGAG 12119 30 100.0 36 .............................. AGGACGACATCGCCGCCCTGCAGTGCGTCGCCCGCC 12185 30 100.0 38 .............................. CCCGAGCGGGCCGAGATGCTGGTGACGATCCGCCAGGC 12253 30 100.0 35 .............................. CGGATTCGTCGCAAGCGACCCGTCGTGTATCACGC 12318 30 90.0 0 .C............C........C...... | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.3 37 GTCCTCATCGCCCCTCAGAGGGGTAGCAAC # Left flank : CCATGCCCCGCATGGTGGGGCCCTGTCCCCGCCGTCACGTCGGCCACCGGAGGACGGAGGCGGCGTTCGGCTCGGGAAGCACTGTCACCCGTCGGATCCACGCGCCACAGACCGAGTCGCTCGCCCAGGCCGCGATCTACCAGTCACGAAAGGCCTTCCCGCGACCGAGACGCCCCCGACGGTTCAGATCCTCGTACAGCGACAACGACGGGCAGTGCGTCGAGGTCGCCGCCAACCTCGTCGCATCGCACGGCGTGGTCCCAGTCCGCGACTCCAACAACCAGGCCGCTCCGACCCTGATACTTCCGGCCGGGGCGTTCTCCTCGTTCGTGGCAAGCATGAGAGCAGGGGCCTGCACCGAAAGCGCTCCTCTCGCCTGACACCCACCGTGCCCGGATTTCAGCAACACTCCCGGGTTTTCCGCACTACCGGAGGTCCGCTGAAAACCGCCGCCCTCACTCAGCCCCAGCACCCCCGACGACCTGCACCTTCACAGTGGG # Right flank : CAGAGGCGGAGCCTAACGCTCTGCATTGCTGATGGTCCTGACGCAGAAGCGGGGCCGACCGGTCTCGCGCAGCGAACACCCTTCGAGACACCATCCAGCGCCTGCCGATCCGCGAGTACCGTCGAAGAACTCGTCGAACTCGGGAGACACGATATGAGTCCTTCGCGTCGATCCGTCCTGGGCGCCAGCCTTTGCTCCGTGGCGCTGACCGTGCCGGGCTGGCCGGACGTGGTCGGACGCATGGAGGCCGTGAGCACGGGGGCGGACATCAGGATCGGCCGTGCGGACGTGGCGACGGTGTCGGCCATGACGGAGAGGCTGTCCGCGCTGGACGACGAGTTCGGCGGGCGGCACGCACGCCCCATGGCAGCGGCGTTCCTGGTGAACACGGTCGCGCCCTACCTTCGGGCCGACGCACACGAGCACGTCCGAAAAGACATGATGGGGGCAGCCGCATTCCTCTACTACCTGACCGGGTGGATGGCGGTTGACGAAGGTCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTCAGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //