Array 1 74608-73619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007044.2 Chania multitudinisentens RB-25 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 74607 28 100.0 32 ............................ AGCCAACCGTTTATTGAAATGGTCAATGATTA 74547 28 100.0 32 ............................ AAAATCAAGCCATGCAGCAGCCAACAGAACCT 74487 28 100.0 32 ............................ ACCGCATTAACGCAAAAATACGGGCCATTCAT 74427 28 100.0 32 ............................ TAAGCAGGCACCCCTCACAGAAACGCATAAAT 74367 28 100.0 32 ............................ TCACTATCATCTTGTTTAATATCGCTAATTCT 74307 28 100.0 32 ............................ AACGATATGAACCGGCTGAACTTCATTGTTCA 74247 28 100.0 32 ............................ AGTTTCCCGAGGAAGATAATGGCTGATAACGA 74187 28 100.0 32 ............................ TGATGGACGTAAATTCTGCCCTCCTTCTGGTT 74127 28 100.0 32 ............................ CAGGGAGCTGCGCAACGCGGTGGCGTCCATCT 74067 28 96.4 32 ...........C................ CGGATGCTACAACGCAGCCGAGCCAGCTTGAC 74007 28 96.4 32 ...........C................ GAGATAATCGCGTTTTTTGCGATTCCGGTGAT 73947 28 96.4 32 .............C.............. AAGTGGGGCCCCGACTAATTCAGAGCATTCCG 73887 28 92.9 32 ........T....C.............. ATAAAGATGTGCAGCACTTAAAACCACTCGGT 73827 28 100.0 33 ............................ GCTACGCGGTTCCCTGTTGACAGGGCGATGGAC 73766 28 92.9 32 .............C....C......... AAAGAAAGAGATGAAAAAGCGAGTAAAGATGA 73706 28 89.3 32 ..C..........C...T.......... TATACACCAACCCAGTGGTGGATCATCCGATT 73646 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCTGGCAGAGATGGGGATTGATGGAGAGGCCGTCCTGCGTGCTTTGGCCGTGGAAGCCGCAGAACATGCGATTAGTCAGGGGCAGCTTTCTGGCCGCCTGCGGCATACTCAGGTCACGCTATTCAAGGCGACACAAATATCCTCTTATTACCAGTCTTTGGTTGGCAGCGGAGCAACGTGGCTTAGCGAGGATAATGGGGTAGGGGCGGTCTGCGATCGGCTGAAGATTATCCCGCTGGCGTGTAATCACCATAATATTATCGATTGTGTTGCCGAGATTCGGGCGGTGATCAAACCGCTGCGCTGATGATCGTGTAATCGCGCCTTTATCTTTGATGAGGCGCGATTACAATAGCCAGATGTTGTTGACCCTCTTTTTTAGCCTATAAGTAATGTATTGATTTTAAAAAGGATAAAAGAACTCGGTAGAAAAAGGGTTTTTTAGCCATTGGTTATGTTACTCAATGATAATTAACGCGATTAACGCTATGTTTGAACA # Right flank : GTCGCAACCGAAATAATGGGTATGTGAAGGCACTGGCAAGGCGGCGGTGAGTGGGGAGAACGTAGCCGGAACAATGCCTGAAACATATGCTCTTTCCCTCGCCCGGTTAGTATTCGGGTGCATTCCCCTAAGTGCAGAAAAAAATCCCATAAGCGGATAGCGCTATTTCAGTGGCTATCATCATGGTAAAATGCTGTTTATTTATACATGATTAAAGGGACTGTCATGATAAGAAAACTCCTCGATCTTGTGCCGATCTTCGGTAAAAGTGACGTATCTATGATCGAAAAATTACTACAAGAGGTATTGCTTCCCCTCGCCGAATGTGATCAGGCGTTACCCAAAAAAGCATTACGGTATGTTATTGATGGTTCAAATACCGATGTATTTCTGGCATTGAGCCAGGTTGATGCAGCGAAGGCCGCAACATTACTCAAAACACCAGGAACGTTGGGCTGGTGGTATGGCGGTAATATCAATACCGGGAAATTCAACACATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 87861-87354 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007044.2 Chania multitudinisentens RB-25 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 87860 28 100.0 32 ............................ TCCCCGCTTAAAATTCGCCTACGAGCTTCCTA 87800 28 100.0 32 ............................ GCTTTCATCAATTCGCCGCCTAACGGATTTTT 87740 28 100.0 32 ............................ TGTCACTGAAACTGAAAAAATTGTATCACCGG 87680 28 100.0 32 ............................ TCTTACCCTGAGCATGAGCGTGAAGCTCGTGC 87620 28 100.0 32 ............................ AATATCATTCGCGCTTGGGGAAACCATGCCGC 87560 28 100.0 32 ............................ AATGGCATTACACGAACAATCTGGCAGATGAC 87500 28 92.9 32 ............A....T.......... ATATACCAACGAAGAGTTATATATTTTAGCAA 87440 28 96.4 32 ...........T................ GATACATCTGAATAGTTACAACTCATTGATCA 87380 27 85.7 0 ............A........CG-.... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : GGCTCATGGGCTGATGCGCTACCAGGTTTTCTTTCTGTTTTTTACTCAGTTGCTTAACCTGATATTCCAGCTTTAGCGCCGTGGAGCGATCGCCAATCTGGCAGTGAAAGACCAGTTCCAGCTCACCTTTACCCCGCAGGGCTTTGGCCCCTTTACCGGTTTGGTGCTGGGCGATACGCCGCGCCACATCGGTAGTGATACCGGTATACAGCATGCCGCCCGGCATACGCAGCATATAAAGGTGCCAGATAATCTCATCCATAAATGCCTACACCGTTTCTCAAGCAAGCAAAGTCACTGTCTATTACGCAGCCGCTATTTTTCAGCGTTACGGGAAAGAGTTCAATGGATAAATAGTCACAGGCTGTTGACCCTCTTTTTTAGCGCATGGCTAATATGTTGATTTTAAAGAGGTAAAAATCTGTGATAGAAAAAGGGTTTTTGAGCCTTTTGTGTTGTTAGCCGATGATAATTAACACGATTAGCGCTATGCTTGAACC # Right flank : AGTGTTCAAACGGCCAATAAGTTAACGCCTGTTCCCTTCTGTTACTTCAGTTACGCAAGAAATAACCTATAATTAATAGGTTATTTCCGACCGCGAAAAACGCCTGAAAAAGTGTTCTATTCTAAAAGTAGTGTTTTATAACACTTTTGAGGTACATATCAAATGACCTGCTAATTAACATGATTGAGTTTATCTTTTCTTTTTATTAACTCTCTTTAGATCATATTCATATAGATTAATCTTAAACATTATTTGATGTTATTAGTTTTTTATATCGTTTTTTATTTTTATATCATCCTATTTGGATGATTATTTTATTTTAATGATTCTGATGCATGCCTCAATCATTTTCTATACCATCTTATAGACAGTTAAATACTGCTAAACATTTACAATGCTTGTTTAATAGACTTGAAATTGATATGCACAAGATAAGTGGATTATCTTGTAAAGCAAACGGTGAAGTATGCTTAAAATTGAAAAGCCCCATGCCGCGTTTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 123552-122624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007044.2 Chania multitudinisentens RB-25 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 123551 28 100.0 32 ............................ ACAGATGATCCCCGTTGTATGCATCCGCCGAT 123491 28 100.0 32 ............................ ATACCAGATAGCAACCCAGCCTCTTTATCAGC 123431 28 100.0 33 ............................ CTGGAACATCTGTCAAAAGAGGCTTTAGAGGCA 123370 28 100.0 32 ............................ TGTGGCGTTGATACAGTTCAAAAGAGCCAATT 123310 28 100.0 32 ............................ CACGGAACATTATGAATGCAGTAAACGAGCTT 123250 28 100.0 32 ............................ GACCAGGATCGCGGAAGGGTCAGAGGTTTCCC 123190 28 100.0 32 ............................ ACTGATAAATTAAAAGAGTTAAGGGATGAAAT 123130 28 100.0 32 ............................ ACGGGCCGTAAACTGGTCAAGACCATGAACAA 123070 28 100.0 32 ............................ ATGACCATAACTGCGGCCCGTGCAATGGCTTC 123010 28 100.0 32 ............................ TAACTTACCTTCCACCAACTTGAAGCCCGGTA 122950 28 96.4 31 .............T.............. GCGCCAACGTGATCAGCGGGAAATTCGCATA 122891 28 96.4 32 .............T.............. ATGTATTCAGCTTGTGATAGCCCATCTGGAAG 122831 28 96.4 32 .............T.............. CGCCTTTCTGGCTTCTTCGTTCAGCTTTTTAA 122771 28 96.4 32 .............T.............. AATCTCTGGCCTCTGGCAGTTCGTCTTTCAGG 122711 28 100.0 32 ............................ ATCCGGGCAGAAACACCCGTAGCATAGCGAGA 122651 28 92.9 0 ...........T..............T. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGCACTCAGTACATTAGACGCACAGCCGTGGCGCAAAGGGCTGCGTGATAATACTGAGCACAGCGGCATTTTGCCGGTGCCGGAGAAAGTGAAGTATCGCACCGTGCGGCGTGTGCAACCAAAGAGTAACGCGGAACGGTTACGCCGCCGTTCAGTCAGCAAAGGGTGGCTGACTGAAGAAGAAGCGCGGCAGCGTATTCCTGATTCAGTGGAAAAACGCTCATCTTTACCCTTTATTCGTTTGAAAAGCTTATCCAGCGAGCAGACGTTTCTGTTGTTTATCGAACAGGGGCCGCTTGGCGATAACGCAACCGAAGGTGCATTCAGTGCTTATGGCTTAAGCCCGACAGCGACCATCCCGTGGTTTTAACCCTAATTTTTTGGCCGATCCTAACTTATTGATTTAATAGGTTAGGATTAGCCATCGCTGAAAAAGGGTTTTTCAACGGATTTGCCTGTTGTTGTTTGATTAACAGTAGGTTAGAAAGGATATGCAACA # Right flank : TTAATCAGATGAGCGCTAACGAGCTCATTGGTGAGTTCACCGCCGTGTTGAAGAACCAACCAACACTACCGATCTGCGCCCCTTAATTCCGTGCTAGTGCTGTTGGCGGGTATTTGAGCGCCGAACACGTAATGTGCTCAAATACCCCAGTCAGATACCACAAGTAATAAAGGAACACAGCCTTGGCTGTGTTCCTGCGCCTTGCATCAAGCCTGATATTCTCAGGCGGAAAGTTATTTATCTATTGATCCAGGCGGCATCAACAAAATGGAATATACCGCTCCAGAACTGGCTGTAATAGGGCACACCATTTTTTTATTTGCTAACCACCCTCATTGATTTTGGCTTGCTGAAGTCTAGATACATACCATTCCAGGCTCTTACATTCTTTAATTCACTGGTCGCTACGTTACCAATAAATTCCCCAACTCTGCTATATGAAAGGTTATCCCAATCCGATAAATATACTTTTGCTTCTGAACCAGCATCTACATGAACTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //