Array 1 1492946-1492466 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851179.1 [Clostridium] bolteae 90B3 acBRc-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1492945 33 100.0 34 ................................. GTCCATATCACGGTAGCCGACAATCTGGCGCCGC 1492878 33 100.0 35 ................................. GACTCCCGACAGTGCAAGGCGCAAAACTCCGCGAT 1492810 33 100.0 35 ................................. CCTACGCCTTGGGCGCCGGACAGTATCAGCATACA 1492742 33 97.0 34 .............T................... AAAGGGCTGTTCCTGAATGCGGATTCCAAACCTA 1492675 33 100.0 34 ................................. TGTTTCAATGCAACCGCCAGACTGCTTGGAGTAC 1492608 33 100.0 35 ................................. TCCTCTTGATTTTTGATGGCTGACCTGTGACCATA 1492540 33 84.8 9 .........................C..TTCC. TTCTGGTCA Deletion [1492499] 1492498 32 75.8 0 .......C....A.A.-..A...AA.C...... | G [1492469] ========== ====== ====== ====== ================================= =================================== ================== 8 33 94.7 31 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TCGTGGGCGGAGTGGGTTGAAATTAAATTTGTGATACGGTTATCCAGGTTGCTTATGGTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAATACTTCCGATAACCCCAACTATAAGGAGATGAAAAACGTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAATCCGCAAACAGCACTTAAACGGGCACGGGCAAACGCGTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAATTATAGAATTGCAAGAGGCCGGTACCTTAAAGGTAGTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAATATTTGGTCGACATCTGCCTGCACTACGCCTGGTGGTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAATCGGAATTAACCCCGCAGCACCATTACTGCTGATAGTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAATNNNNNNNNNNCGTCCTCGCGGGCGGAGTGGGTTGAAATCGGAATTAACCCCGCAGCACCATTACTGCTGATA # Right flank : CCATCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAACCAGAAACATTAGCTATAACTAACAACACGCAGCAAAAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGGATCTCCCTAAGCCCCGGCACCAGCACTTTGGCGCTGGTTTCCAGAATGATCCTTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGATACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCCTTAAATGCAGTCGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGAGAAGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCGCCTCCATGGAAGTCCCAGATATTACCCTCTGAAATGGTGGCC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 808634-809871 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851178.1 [Clostridium] bolteae 90B3 acBRc-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 808634 33 100.0 34 ................................. TCCTCAGTGAGCGTATACTCATCCGCAAAAGACC 808701 33 100.0 33 ................................. AGTTGGGCAGTAAGCCAAATATAGTTAAAACGG 808767 33 100.0 33 ................................. AAATGTGACCGTGCCGCTATCTCGATAGAATCC 808833 33 100.0 33 ................................. AGAGAAACAAGCATAGAAATTAGACAAATTTAT 808899 33 100.0 35 ................................. ATCACCGAACCGGAATAAGGGCATGTCCGACGTAG 808967 33 100.0 34 ................................. AGTTTTAGTCTGATATCTTACCTCTGCATCCGGC 809034 33 100.0 34 ................................. CTCAATAACAGCACCCATCTGCTCCCCGTCTGCC 809101 33 100.0 34 ................................. ACTAAAGGAAGCAGTCACTCCTCCCTTTCCTAAC 809168 33 100.0 35 ................................. ACAAAGGCAGCTGAGAAATTTCTGAAAGATAACCC 809236 33 100.0 33 ................................. GTCTCCGCTAAGTCAATCACTTTACGAGTATAA 809302 33 100.0 33 ................................. AAATATCTAACAGGAGATACAGGAAAATATCTC 809368 33 100.0 35 ................................. AACTCCTCGCCACGGAGGACACCGGAACCCAGCGC 809436 33 100.0 33 ................................. TTCCAGTGTAGGAAAAAGTACTATTGCATTTAC 809502 33 100.0 35 ................................. CCTGCCATGTCCGATGGGACGGCCTTGCACCAGCG 809570 33 97.0 34 .............G................... TTATTTTAGACAGGCCGTAGGTAACTGTGAAATG 809637 33 100.0 35 ................................. CCATGGTCGTGTATTTGACCAGTGAGTGCAGACAA 809705 33 100.0 34 ................................. TTTGATGGCACCAAGTACTACCCCTCTGGTTGCA 809772 33 100.0 34 ................................. AATGAAATGATGTCGCTTGTATCAACATCATATA 809839 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= =================================== ================== 19 33 98.9 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGCAGTTTTGGATAATTTTGCT # Right flank : GATACCTGTAAGCCCCTAAATTGATGCAAAAGGAAAATTGCTCCCCACGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAAAATTCGCTAAACATCAGTTAAAAGAACATATTAACAGTATCCCGGTCAACAGGGAATCCGTTAAGCACATACCCCCCCCCCACCCTCCGTAAAAAACATCCGCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAGAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGACGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGAAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACCGCGTACTACAATCAAAAGGAAAAAGAAATCAGGGAGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3176567-3176778 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851178.1 [Clostridium] bolteae 90B3 acBRc-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================ ================== 3176567 32 100.0 26 ................................ GGTCTAAGTAATACCACTGGCCTCCC 3176625 32 96.9 28 ...............................C CGTCCAGATAATACCATCTTCCATTAAT CT [3176630] 3176687 32 84.4 28 G....................CT.A......C CGTTCATATAATACCATTTGCCGTTGAT 3176747 32 75.0 0 G...............AT...AATA...T... | ========== ====== ====== ====== ================================ ============================ ================== 4 32 89.1 28 AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Left flank : CAGACAATCGCTTTCCCAAGGCCAGACGCGTCCCGCGCACCTTGATGATAACGCTTCCGCTGCCTTTCTTATTCAATATATTCACAGGCGTCCCCTCATTGACCCCCAGGGCCTCAAGACGTCTGGTAATGCTCTCATCCACCTGCACGCCCGTTACAACATACCGGCCGCCGATCTCACACTCGTTCAGCTTTTTCTGCATTGATGCCTGTCTCCTTTTGTAGTTACATTTAAACCATATTCATTGTATGCTTAATGCGAAAAAATGTCAATAAAAAGAGTTTGTTATGACAAACTCAATTCAAAAAAAGATACAGCGAATCTCTCCACTGCATCTTTTCCTGATTTTTCTATATTTTTCTGTATTTTCCGGTTCTGTATATTCGTATTATGTTTTACTGCACCCAGGCTCCGGAACCATCCACATATTTTCCATCCGGCGTCCATGTATTATAATACATGGCTCCGTTGGTGCCCAGATAGTAGTACTTGCCGTTGAT # Right flank : GAAGGATTCAGATAATACCACGTTCCGTCCAGCTTCTGCCAGCCGGTAACGATATACCCCTTGTTGTTGAAATAATACCATGCGCCGTTAATCTGTTTCCAGCAGGAGGCCGGATATCCGCCGGTGTCATACGCATACCATACACCTGTACCGTCCTGCTCCCAATGTCCGCTTCCGCCATAGCGGCCAAGCTCATCCTCATCAATATACAGGGAGCTGGAATCCTCGGACCATTCTCCTGTCTTATTATTGTAACGGGAAATAGCCCTTACACGGAAGGTATAGTCTCCCTCCCTGTTAAAATAACCTGCAAAATTATATGAGGTTCCTGTAGTGCTGACCGTAGTGACCGTCTTATCGTCACGGAGCAGCTTTACATCGTAACTCTTAGCGCCCTCAATCTCTTCCCACTCAGCCGTGGTATCATTCCACTCCAGCTCCGACGCGCCCTGAAGCTTACCGCCGATACGTTTTAACTCAGCATACACTTCAATGTACTG # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:-0.09, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //