Array 1 19099-20408 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBDH01000009.1 Limosilactobacillus fermentum strain 90 TC-4 Contig_212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19099 29 96.6 32 ............................C GCTAATGCTGGCGCCACCTTGACCTTCACCGT 19160 29 100.0 32 ............................. GACCGTGTCATCGCTAGTTGACTTAAGCTCAA 19221 29 100.0 32 ............................. AAGTGGTAAATCCATCTAAGTCAATCTTAGTA 19282 29 100.0 32 ............................. AGTAAGCCCAGCGTTCCCGGCTGCGTCAGTTG 19343 29 100.0 32 ............................. CCATTTTTTGCTCCTTTCGTTAGGCCCAACCG 19404 29 100.0 32 ............................. ACATGGTCGGGAAGAACGATAAGACTATTAAT 19465 29 100.0 32 ............................. CGGTGCGGTTGGTGATGAGGTGCCGGATTTTT 19526 29 100.0 32 ............................. AACAAGTTTTGCTTGCGGGGCTTTTGCTTGAA 19587 29 96.6 32 ............................C TTGAACTGTGGGGAGAATTCAAATTCCTTCCC 19648 29 100.0 32 ............................. CGATAGTTAGCTTTCTCGGCTTCATTCCGATC 19709 29 96.6 32 ............................C TGAGAAAGATAATTGATTTCAATCTTGATGCG 19770 29 96.6 32 ............................C AAAATTAATAGAAAATCTAATGTACGCAGCAT 19831 29 100.0 32 ............................. ACATTCTATACAAAGATGGAGGAGCGCTTGAT 19892 29 100.0 32 ............................. ATGCAAATGGTCAGTCGTACGGTAGCCGATCA 19953 29 100.0 32 ............................. GAACCACATATGGCATTGTGGTGGCAGGTCGC 20014 29 100.0 32 ............................. GACCAGTATCCGATGGCAGAGAAACGTGCGTG 20075 29 96.6 32 ............................C GGCAAACCAAACATCAAGTTCGAGTTCCTGGT 20136 29 96.6 32 ............................C GAGGTTGTCGACTTCCTGTATGAGGTGGTCAT 20197 29 96.6 32 ............................C ATGGAGGAGATCGAGCAGTTGACGACCTTAGT 20258 29 100.0 32 ............................. AGATCACATCGTGCCGATCCACATCTGATTTA 20319 29 96.6 32 ............................C AACACTTATTTAGATGATGAAGGGTTCGGGTC 20380 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTTAACCAAGGGGAGAGAGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGGAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : CTCTACGCCTGTGGCAAGACGCTATTTCCCGTCTTTTAACAACGTCCAGCTTTTGTGATCCCTCTACGCCTGTGGCAAGACGACTTCGTTTCCATTTTGATTGGTTGTAGCTTTTCGTTTGAGGCCGAATTGCTGGCGGCCGGCATCGAGGTGCGCCACATCACTGAGGGGGTCAACGTGCAGATGTATAACACCAACTTACCCCTGCAAGGTGCCGGCGCCTTGCACGATAACATGGTGGTGTCGATGCGACCAATCCCGGCTAGCCAGGTAGCTAAGGCGGTGGAGGTGACGGCGGCGATGCCTAGGGTCCACGGGGCACCAATCCACGTTGGCGACCCCGCTTCGTTAGGGATCAAAGACCTGTCCCACCCCGATTACGGTGACCCGGTCACGATCAAAGATGGGGAGCTGCCGGTCTTTTGGCCCTGTGTGGTGACCCCGCAAAACGCAATCATGCAAAGTAAGCTCCCGCTGGTGATTACCCACGCCCCCGGCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //