Array 1 6144-4400 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPI01000046.1 Staphylococcus pseudintermedius strain ST751 RH1_S2_L001_R1_001_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6143 36 100.0 30 .................................... TTTATGGCGATTATTGCTAGTGAATCGGCA 6077 36 100.0 29 .................................... AGAAAAGATGAACACAGGTGATGAAGCGT 6012 36 100.0 30 .................................... GAACAGTTTGATTTACCTTATCGCTATATT 5946 36 100.0 29 .................................... TGTTTCTGTTTGTTACTTTTATTCTGTAC 5881 36 100.0 29 .................................... TGAACATTACCGAACCCTCTTGTGATTAA 5816 36 100.0 30 .................................... GCGAACAACGGTATGCTTACGATGTTAGGT 5750 36 100.0 29 .................................... TCGCATTAATCAAGAATCAAAAGGGTTGC 5685 36 100.0 30 .................................... AAAAAGCCAGTACAAGGTTCTATGGTTTCA 5619 36 100.0 30 .................................... ATTAAGAACAATATAAATGTATCGATTTCA 5553 36 100.0 30 .................................... GCAATGGATCAATTGAAGGCTCGTCAACAA 5487 36 100.0 31 .................................... GTGTGTCATCAGACTTTACACCTTCAAATAC 5420 36 100.0 29 .................................... GAACTCTTAAAGTATCTTTTAGGACACTT 5355 36 100.0 30 .................................... AAAGATTATGCCATCTTCAGTTACTTTAAC 5289 36 100.0 29 .................................... TCGTTTTGTGATAACAAATCAAGTGATAT 5224 36 100.0 30 .................................... GATTATGGTGTCGAATCAAAATCAAATTAC 5158 36 100.0 30 .................................... GATGAGAGGTGTAAAAGCACAATTGCATGA 5092 36 100.0 29 .................................... TATACGTGCAAACGGTTCTCTTTTAATTT 5027 36 100.0 30 .................................... CGGCACAGATTGTGTGATTTGTTGACCTGC 4961 36 100.0 30 .................................... TCAAAAGTATTTCGTCGAGATGGAGCGACT 4895 36 100.0 30 .................................... TGAAGATTTTCCACGCCAATGTATTTTTAT 4829 36 100.0 29 .................................... TAAAATCAGAAACAAAAGGGCAAGCGGTT 4764 36 100.0 29 .................................... CATTACCTTTGTTTGCGTTGTTTGATTCT 4699 36 97.2 29 ............................A....... GTTAACTGAACTCGAGTGTTGGCGCTTGA 4634 36 97.2 30 ............................A....... ACAGGCTTAAAGAATCATTACAGTTTGCTA 4568 36 97.2 30 ............................A....... TTGACCGTGCAAAAATTAATCACAAGGCGC 4502 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 4436 35 83.3 0 T........T................-.CA.C.... | CT [4403] ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.0 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATATTTTTGGATTTGAG # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //