Array 1 5299645-5303664 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912107.1 Saccharicrinis fermentans DSM 9555 = JCM 21142 strain DSM 9555 CytfeDRAFT_CFC.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 5299645 30 100.0 38 .............................. TCTTCCAGAGCACCAGTGTAACGGTTGCCCATCATCCC 5299713 30 100.0 35 .............................. AAGGGAAGTAGCGGAAGTTATAAGCGTAGAAGAAT 5299778 30 100.0 37 .............................. AATAAAAAGCTTAGTTTTTTCTTCTAATTCGTAAGTC 5299845 30 100.0 36 .............................. TAGCTTGTTAAGGCTATAGCTATATCCGAAACCTCG 5299911 30 100.0 35 .............................. GATATCATCGGCACTGTTGTAGCAAGGAATTTCGC 5299976 30 100.0 36 .............................. TTTGCATCCGCGCCTCTGATAAAACCTTGATCAATT 5300042 30 100.0 35 .............................. TGGATCCTATAGACGTTGAGGCTCTTGTAAAACAA 5300107 30 100.0 38 .............................. TTCGGAAAATATAGAGATAAAACTGTAGATTTTTTAAT 5300175 30 100.0 36 .............................. ACTCTAGTCCAACCGTTATTTTTATCTATACACATG 5300241 30 100.0 37 .............................. ATTGGAATGTTGTCTTTAATAGTAAACACAACACGAT 5300308 30 100.0 37 .............................. GGTGTTAAAGAATCCTGCCCCCTATTCCTTATCCAAG 5300375 30 100.0 35 .............................. GATGGCGATGATCGAATAGCGTTTGGTCAACCATA 5300440 30 100.0 39 .............................. TCGAAAATTTGTTTAAATAAACCATCGAAGTAGTTGTAA 5300509 30 100.0 36 .............................. TATCTTTTTACTATTTTTTACGTTTGTAACTGAATG 5300575 30 100.0 38 .............................. TACCTAGGAGGGTAGTTTGTCACATCATCATCATATGG 5300643 30 100.0 37 .............................. TGCGTTGGCAGTACTTAATTCCTTCCTCTTGTGTTTT 5300710 30 100.0 37 .............................. GAAAATAAAAATGCCTTATTTGTGACGTTAACATTTA 5300777 30 100.0 37 .............................. TGATGTTAGAGCATCGTAATCTTATTATAGAACAAAC 5300844 30 100.0 36 .............................. GTAAGCGCTAAGAAATCTCGATTAACACCAGACAGT 5300910 30 100.0 37 .............................. TATCTATTATCTTTAGTTAGAGAAGTTAATTTGTCAA 5300977 30 100.0 36 .............................. CGCTCATGAGCGTGCCGTCGGTGCGCTCATGAGCGA 5301043 30 100.0 37 .............................. AGCTTTAGTTTTCCCTCGGCCTGCCCCTTCTCGATCA 5301110 30 100.0 37 .............................. AATATTGTGTGAACATTTGATCTCTTTCCTCATCGTT 5301177 30 100.0 37 .............................. ATTGTTTTTTCGTTCACATATTCGCCAACCCTTATAA 5301244 30 100.0 38 .............................. TTTAGTCTCAAGTTCTTTACGTTCTGCATCTGATTTAC 5301312 30 100.0 37 .............................. AACCAATATGATGACTATTGGACATTAACAATTTAAT 5301379 30 100.0 36 .............................. AAGGCCAGCTTGTAGGCTTCCCTGACGAGGTTATTA 5301445 30 100.0 37 .............................. GGAACAACGGCTTCACACATAATTGGTACAAGTTGTC 5301512 30 100.0 35 .............................. ACAGGAATGTTGTCTTTAATAGTAAACACAACACG 5301577 30 100.0 36 .............................. TTGAGTGTAGGTTTATGAGAACAGTAATGGGGGCAA 5301643 30 100.0 36 .............................. GATGGTGTTGGAATATAGCTAGTATCTTTACCATCT 5301709 30 100.0 36 .............................. ATGAACTACATTATCGATAGTCTTAAATTGCTCTGA 5301775 30 100.0 36 .............................. TTGGGCTATTGATTCGCTTTTATTCGTTCCAGTCAT 5301841 30 100.0 37 .............................. TTCGTGGTATCCCCGCTATACTTATCGACTACGAACA 5301908 30 100.0 39 .............................. ACGTTCATGTCCGATCTCCATGCTTTACTTAAGTTGAAA 5301977 30 100.0 34 .............................. TCGACTATTACGGCCTGTCCAGCTTCGACCTGTT 5302041 30 100.0 38 .............................. TCAATAGCTAAATAATACAACATCCCAGAATCATAACA 5302109 30 100.0 35 .............................. TACGAGGTGGCATTGATGAAGTATGTAAATAGTTT 5302174 30 100.0 37 .............................. TCAGGAAGAACAAGGTAATAAGAGAGATGTAAGTGTG 5302241 30 100.0 35 .............................. TAGTGAGTTATCTAAGGAAGAAAAATTCATGCATG 5302306 30 100.0 36 .............................. CTATAAACGTATAAACACAGCTACCTTGCCTGTAAG 5302372 30 100.0 37 .............................. TTCTTATATTGTTTTTTAATCCGCTTTCCCAATTAGC 5302439 30 100.0 37 .............................. GCGCTATATCAATGTCTATTTCGAATAATTTTACAGT 5302506 30 100.0 35 .............................. AATTATGTTATAGCTGGAAGGCGACACCCCCCGTC 5302571 30 100.0 37 .............................. TTGCGATTGATTACGAACATGGACTACTTCTTTAACT 5302638 30 100.0 35 .............................. CAAACAGCCCGTTACTCAAGGTGGGATGGTTTTAA 5302703 30 100.0 38 .............................. ATTTATTGATTTAGATCTTAGATTTCAGGAGATCGAAT 5302771 30 100.0 37 .............................. GATTTAACAGCAAATATTACAGCATCGGCTACTACAT 5302838 30 100.0 36 .............................. AGAGTACGATGCTCTAGTGCTAGAACAAAAAGCTTT 5302904 30 100.0 37 .............................. TTGCCAGCAGGATGTATTTTTATTAAGGATAGATACT 5302971 30 100.0 37 .............................. TTCTTATATTGTTTTTTAATCCGCTTTCCCAATTAGC 5303038 30 100.0 37 .............................. GCGCTATATCAATGTCTATTTCGAATAATTTTACAGT 5303105 30 100.0 35 .............................. AATTATGTTATAGCTGGAAGGCGACACCCCCCGTC 5303170 30 100.0 37 .............................. TTGCGATTGATTACGAACATGGACTACTTCTTTAACT 5303237 30 100.0 35 .............................. CAAACAGCCCGTTACTCAAGGTGGGATGGTTTTAA 5303302 30 100.0 38 .............................. ATTTATTGATTTAGATCTTAGATTTCAGGAGATCGAAT 5303370 30 100.0 37 .............................. GATTTAACAGCAAATATTACAGCATCGGCTACTACAT 5303437 30 100.0 36 .............................. AGAGTACGATGCTCTAGTGCTAGAACAAAAAGCTTT 5303503 30 100.0 37 .............................. TTGCCAGCAGGATGTATTTTTATTAAGGATAGATACT 5303570 30 100.0 35 .............................. AGTTATGGTCCTTATTTTAGTGTTTTTCGTAAAAA 5303635 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 61 30 100.0 37 CCCTTAATCGTACCATACTGGAATTGAAAC # Left flank : TTTATTGGTGATGTATGTGATATTAATGTACGATATGGGTGAAAAACGAGTGGGGAAAATGTTAAAATTGTGCCGGCAATATTTAAATTGGATTCAAAACTCGGTTTTTGAAGGTGAAATAACAGAGGTGAAATTAAAAGAGCTCATTTCAAAAGCTGAGATGATCATGAATGAAGAAGAGCAGGATAGTCTAATTTTATTTAAAAGCCGAGAGCAAAAATGGCTTGAAAAAGAGGTGGTTGGATATGAAAAAAATGACCTCGATCAATTTTTATAGTTGTCGATGTGTATTTTGGGGCCTCCAGTGACTATTTTTTTGGGGGGTTCATTCTGATCATTGCGTTCTTTGACATATTGAAATAACTAATGTTTTGACAATGTTGTCGAAACCCAGTATATTTTATACTTTTGCACATCGACAACTTAAATAGCTCGTTTTAGTGCTATTTGTGAATCTTATTGTATTGAATATCAGATATTTTTTTTGAGTCGTCGGTCGA # Right flank : CTTTAATCCATTTTTTATGTCATTGTTTACAAACCTTACCCTTAATCGTACCGTAAGTCTTCGGTCTTTCACATATTGCGACCTTCATACTAGCGCTGTTTCTTTGATGGCAAAAAATGAGAATGACATTAATAACATTTAAGCGTTTGTATAAGGATTACCAGGAATCAGATTTGAACATAAAAGATTTCTGTACCAACCAAGATTTGGCTCCTTCCACTTTTTATTACTGGCGAAACAAATTGGAAGAGGCACTAGCACATGAGCCAGATAGCTTTGTTCCACTAGAATTTGACAGTAATCCGTTAGCGACGAACAATCAATCGAGTCCATCTATCATCAAGAGTAAGCCTACTTTAAATAATGATGCTCCCATTGAATTCGTATTTCCCAATGGCACCAAGATGCTACTAAGAGATAATATAAACACGCAAGTATTAAAAACAATTGTTCACTTATTTGATTAAGTCTGATGTTTCATTTACACGATAAACTTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 5306353-5307449 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912107.1 Saccharicrinis fermentans DSM 9555 = JCM 21142 strain DSM 9555 CytfeDRAFT_CFC.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5306353 30 90.0 35 TAT........................... TTATTCCGACTTCGTAAAACAGACTTTTCCAAAAT C [5306356] 5306419 30 100.0 35 .............................. TTATTCCGACTTCGTAAAACAGACTTTTCCAAAAT 5306484 30 100.0 36 .............................. GAACAATCTAAATCAGAAGTTGAAAGAGAGAAGGCA 5306550 30 100.0 37 .............................. TCGTGTAAATGTTACAACGCATTTCTTTTTTGTACCA 5306617 30 100.0 38 .............................. GAAGTAAAATAATCTTTCTGCCAAGCACGATTACGCAT 5306685 30 100.0 38 .............................. GATTAAACTCTATGTTTAACGTAATACAATTTCCGTCT 5306753 30 100.0 38 .............................. TGAAAAGGAGGAGCTGTTTAAACAGCTCAAAGAAGAGG 5306821 30 100.0 35 .............................. AAATTTGAAAATGTTGTTTCGTTGTCCATGATTAT 5306886 30 100.0 36 .............................. GAGGATTTTGCAACCTTGAAAGATGGTGTATATGAG 5306952 30 100.0 38 .............................. GAATTATAATTTTGGGAAATGCCTTAATACTAAAATGT 5307020 30 100.0 38 .............................. AGATTAGAAAATGCAGGATTAAACCCAGCGTTAGCCAT 5307088 30 100.0 36 .............................. CACCCAGACGCTGTTTTTATGGTTTCGAACGAGATT 5307154 30 100.0 36 .............................. ATCTTCCTGTTGTAATTAGTAAGCTAGAGTTAAGTA 5307220 30 100.0 38 .............................. AGGCATAGGTTTTCCGTCCCATCCTTTCTTAGCTGTAA 5307288 30 100.0 35 .............................. TTGTTGACGGAAAAATAAGCTTAGTTGAGGGGGCG 5307353 30 100.0 37 .............................. ATATGTCGTGGGGGAAAATGTTTCTGGAATTATTAGT 5307420 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.4 37 CCCTTAATCGTACCATACTGGAATTGAAAC # Left flank : CGAAGGCTATTACCCCAAAGCGCTACAAGGAGGAAAGATGAGTAAGGCGCTGGCTTATACATACAATCTTTTCTTACGTCTGTCTCGCTATCATCTTGATGGCCGATATCTGCCTGACAACAACGGAGCTGAAAATGCAATTAGGCCGGTAGCTGTTGGAAGAAAAGGCTATCTCTTTTGTGGCAACCATGATGCCGCAGAAAATGCAGCAATTATGTACTCACTACTGGGATGCTGCAAAGCCAGTGATGTAAATCCTCGCGAATGGCTTACGGATGTATTTTCTAAGATTGCGTTATACAACAGCAATTATGATTTAGACTTGGCTGATCTTTTGCCGCACAATTGGAAAAAGTCTAATAGTTGTCAGAATATTCCAAAAAACACCCACTAATTTCGATTAATTCCAAAAGATTCCAGTAAAACTTAGAGATTTCCAACGCTCCAATCGACATCCGGATTGGAGCATTTTTTTACTTTGCAATATGTAGCAGACCGCA # Right flank : CATTGAAACAAATGTAGAGTAAGTCTTCGGTCTTTCACATATTGCGACCTTCATACTAGAGCTGTTTCTTTGATGGCAAAAAATGAGAATGACATTAACAACATTTAAGCGTTTGTATAAGGATTACCAGGAATCAGGTTTGAACATAAAAGATTTCTGTACCAACCAAGATTTGGCTCCTTCCACTTTTTACTATTGGCGAAATAAATTGGAAGAGGCATTAGCACATGAGCCAGATAGCTTTGTTCCACTAGAATTTGACAGTAATACCGTTAACGACGAATAACCAATCGAGTCCATCTATCATCAAGAGTAAGCCTACTTTAAACAATGATGCTCCCATTGAATCCGTATTTCCCAATGGCACCAAGATGCTACTAAGGGATAATATAAACACGCAAGTATTAAAACAATTGTTCACTTATTTGATTAAGTCTGATGTTTCATTTACACGATAAACTTAAATACTTTCTATATCCGGCACCAGTGGATATGCGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 3 5310140-5310434 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912107.1 Saccharicrinis fermentans DSM 9555 = JCM 21142 strain DSM 9555 CytfeDRAFT_CFC.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 5310140 29 100.0 37 ............................. AAAACAACTACCAAATTGGCTTTAGAGAGGACTTCAC 5310206 29 100.0 39 ............................. TAAAGATAGGAACAGAAAGAAGCTCTCTCGCTAATAAAC 5310274 29 100.0 36 ............................. GGGCTTCAGATAGCTTTTTTTCGCCGGCTTCTTTTT 5310339 29 100.0 38 ............................. TTGTAATGTCTCTTGTATTAAATCTGCGCTTATGTCCC 5310406 29 93.1 0 ...............G............T | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 98.6 38 CCTTAATCGTACCATACTGGAATTGAAAC # Left flank : ATGAGTAAGGCGCTGGCTTATACATACAATCTTTTCTTACGTCTGTCTCGCTATCATCTTGATGGCCGATATCTGCCTGACAACAACGGAGCTGAAAATGCAATTAGGCCGGTAGCTGTTGGAAGAAAAGGCTATCTGTTTTTGTGGCAACCATGATGCCGCAGAAAATGCAGCAATTATGTACTCACTACTGGGATGCTGCAAAGCCAGTGATGTAAATCCTCGCGAATGGCTTACAGATGTATTTTCTAAGATTGCGTTATACAACAGCAATTATGATTTAGACTTGGCTGATCTTTTGCCGCACAATTGGAAAAAGTCTAATAGTTGTACAGAATATTCCAAAAAAACACCCACTAATTTCGATTAATTCCAAAAGATTCCAGTAAAACTTAGAGATTTCCAACGCTCCAATCGACATCCGGATTGGAGCATTTTTTTACTTTGCAATATGTAGCAGACCGCATATTTACAATGTAGATGCGAACCTTTTCGCTAAC # Right flank : TTTATCGATGTTATATGGAATATAGTGGGTAATCAAATTTTAATTTTCCGCATGTAAAATAGATCATGTTGATAAAATTGTTAATATTCCGATATCTTCTGGCTCTTTTTTTTGCCAGTTGTATCTTGGAATTAATACCTTCTAAAATTCCATTGTTTATTTAGCTTTCGATATAATTAAAGATACCACTCCAATGTGCTTTTATGGTGTTGACGACCTTTACAAAAGGGGCGATTTTACTTTCTGATGCTATGTCGCACCAATAAGCTAAATATCCTTCTGCTTCTTCTGTGTTTTCAATATCCCAAAAGTCTTTAAACAAGTGCATAAGCCTATAGCCGTCACCTAGCCTTGGATACATCTCTAACAATAAGTCGCGCTCGTTCTGCAGCTTAGGAACCAACTTGTTTTTGAGGAATGTATACCTATGTCCTTTTAACATGTCGTTACCTTTGCGTTCCACTTTACAACTCATCCATAGCATTATTAACCTCCTAAAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //