Array 1 162498-160655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWV010000002.1 Salmonella enterica strain 431 NODE_2_length_610363_cov_207.719838, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162497 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162436 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162375 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162314 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162253 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162192 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162130 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162069 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162008 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161947 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161886 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161825 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161764 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161703 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161642 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161581 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161520 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161459 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161398 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161336 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161233 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161172 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161111 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161050 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160989 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160928 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160867 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160806 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160745 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160684 29 96.6 0 A............................ | A [160657] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180122-178629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWV010000002.1 Salmonella enterica strain 431 NODE_2_length_610363_cov_207.719838, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180121 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180060 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179999 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179938 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179877 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179816 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179755 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179694 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179633 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179572 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179511 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179450 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179389 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179328 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179267 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179206 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179144 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179083 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179022 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178961 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178900 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178839 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178778 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178717 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178656 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //