Array 1 512495-514642 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRY01000003.1 Bacillus sp. C1-1 NODE_2_length_846478_cov_28.902576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 512495 32 96.9 34 G............................... ATCTTTACTACTAAGGAAGACTTGTTGAAGAGAG 512561 32 96.9 34 G............................... ATCTTTACTACTAAGGAAGACTTGTTGAAGAGAG 512627 32 96.9 35 G............................... TGATACTGGTACTCTGATATCAATTTTCGCATCTG 512694 32 96.9 36 G............................... CATAATTTAATTCATGATAATTAACATCATGAGGGA 512762 32 96.9 34 G............................... ACAATCTTGTTAGTGAATGTGAGAGCTTGCTGTT 512828 32 96.9 33 G............................... TATCATAAGGAGATCTTTTTCGTCTAATTTCTC 512893 32 96.9 34 G............................... CGCGCTCATTAACGATTACCTACCGAATGCCCCA 512959 32 96.9 34 G............................... ACCTTCACCCTGTTGCCCTTCTCCCTCACTCTCT 513025 32 100.0 34 ................................ TCTACTGTTTCTTGAGAAGCCACAGCAGTGTTTA 513091 32 100.0 35 ................................ TTTTCGTTTTGTTCTGCACCTTCGATTCTTACCCT 513158 32 100.0 34 ................................ AATAAAAATATTTTATTATTTTGTAGTAATCATA 513224 32 100.0 34 ................................ ACGCTTATACGGCGCCAGCAATTCCCGCGCCTTT 513290 32 100.0 35 ................................ GTGCGAGAGCTGGTTTTGGGATACGCCTAGCTCCG 513357 32 100.0 34 ................................ TTGGCGATTTAGGTGAGATCACCAATCAATTAGC 513423 32 100.0 34 ................................ ATTGTGCTACCAGTATATCGTGATATATATTGGT 513489 32 100.0 33 ................................ TGGAATACCTTCGGTTTCTTGTTAAGGCTTGTT 513554 32 100.0 33 ................................ ATTTCCTTTATCCACGACTTGTTCGAGATTGTA 513619 32 100.0 34 ................................ AGAGGAAATGTTGACAATTGGACATCAAGTAATT 513685 32 96.9 34 ............A................... ACCATTCTCCATAACAATGTCACCAAACGAATCT 513751 32 96.9 34 ............A................... TTGGTCAATCTGAGGTAATTACTGGAGAGCATCA 513817 32 96.9 34 ............A................... AATGTGATTGCTGTTAAATCAGCAACAGAATTAA 513883 32 96.9 34 ............A................... TATACCATCTAAACCTTGTTTGCCACGTTCAGTT 513949 32 96.9 34 ............A................... ACCATTCTCCATAACAATGTCACCAAACGAATCT 514015 32 96.9 33 ............A................... ATTTCGATAGCGCCCGCATTCGTAGTTGCTATG 514080 32 96.9 35 ............A................... CATTACGATGTCTCCAAACGAATCAAGCGTAGGCA 514147 32 96.9 33 ............A................... TAAAATCTTCGTTTGTCTGCCACAGATAAATAA 514212 32 96.9 36 ............A................... GCCTGTTAGTTTGATAGGGTGAACGCCTTCCATGGC 514280 32 96.9 35 ............A................... ACAATAGATAATGTTCAATTGATCCACTCCTTATC 514347 32 100.0 35 ................................ GGGTACGACAGGTGCGCTTGTTTAGACGCCTCGCC 514414 32 96.9 33 ............A................... CCTTCGAATGACGAAAAAGCAGAAGGAATTGTG 514479 32 100.0 36 ................................ ATTTATACATCCTCCTCAAATAATTTAACCGTGCTC 514547 32 93.8 33 ............AA.................. CTGTTGAACGAATTGACCATTAATTTTAAACCA 514612 31 87.5 0 ............A..............-.T.G | ========== ====== ====== ====== ================================ ==================================== ================== 33 32 97.6 34 ATCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TTTAAACGGCGCATCGCACAGATGGCAAAGGAAGTAAAAGCGAACCCCCGTGCAGACGGCGTCGAGGAAATATTTTTACCAGGTGAACGCGAAGATAAGGAAAAGGCAAAGCGATTGAAAGAGGGCATCCCATTATCCGAAGCGGTAGTTAGTGAATTAGAAGAAGTTGCCGCCTATTATGGCGTGGCAATGGACCGTAATCTATTAAAAATGTAAGGGGAAGGGAAACTATAAAGAACCTCTTAGTTGTCTTACTTCTTCGCTCATTAGCTTACGAGTTTGCTGTTTGGGGAATGCCATAAAAAATGAATGTGTAGTGAGTCGTCCTCTTCTTTTAATAGGTGCGAACCCGAAGCGAACATAAAATCCCTAGAAGACCCGCACCACTTTTTCGGATGAATGTGTGAGAATATGTAACGGATATGGAACGTGGGTTCTTTTTCTTAATCAATTTATGGTACTATTTAATAGGAAAAGGTAGTTTTAAGCCTTTTTTCGCT # Right flank : GAGTGCACGAATTAGAATGATGACCATATCATCCTAGAAAATCGGACTATGTATCCCTCTCGCTATGTCTGTACTTGTAAATGTCTAGACAAAAACCCCCACTTGTAAAGTAGGGGTTTTCAAGTTTACAATCCAAACACAATTGGCATCCAGAAGTACACGGCTCCGGTAATGACGATAATAGAGACGATGTTGAGCCATACACCAGCTTTCGCCATGTCACCGACAGCGAGATAGCCTGCGCTAAATACAGCTGTATTCGGAGGTGTGGCCACTGGGAGCATATAACAGGAACCAGCAGCTAGTGCAGCTGCAGCCATAAGAGGTAGAGGATCAACACCTAAGGCAATACCGAGTCCGACAGTAAGTGGTAGAATTAAATTTGAAACGGCTGTATTCGAGAGAATTTCAGTAATCCCGAGTACAAATACGACTAAAAGCAATAGGACAAAAATGTATTCCATCCCTTGAAGCATTTGTAGTAAATCTCCAATCGATTC # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : TCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 529250-530008 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRY01000003.1 Bacillus sp. C1-1 NODE_2_length_846478_cov_28.902576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 529250 32 100.0 35 ................................ AAAAAAACTATATGATTGGGCGCAAAAGTGCGAAA 529317 32 100.0 34 ................................ ATCTAGTGATGTGGAAGCGGATATAAGAGCGGTA 529383 32 100.0 33 ................................ TTTTGACTCGTTATTACCGCTACTACCATCCAT 529448 32 100.0 33 ................................ TGATTTTATGGCGAACCAGAGAATTAATCCGAA 529513 32 100.0 34 ................................ ATGATTTTGAAGTGTACGGAACAGATCAAACGTC 529579 32 100.0 35 ................................ TGATTAAGTAGTTTGTTTTGTTGCAAACGCTTCTT 529646 32 100.0 33 ................................ ATCGATCAGGAACGGAAAAGCCGTTTAAAGCGG 529711 32 100.0 33 ................................ TCCATTAATCAGCGCAACGGCAATAGAACCGTC 529776 32 100.0 34 ................................ GTCCGCTTCCGCCCAATCCTCATTGTCGATAATA 529842 32 100.0 35 ................................ TCCTATTTGATAGTAAGCTTGCTTATGGCTAAGAT 529909 32 100.0 36 ................................ AATTCGGCTTTAGAGGGTAAATGGGTTTCGGGTCCA 529977 32 75.0 0 ..........C..GA....A...A...C.T.C | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 97.9 34 ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GTATGTAGAAGATGCACGTTTGTCTAACTTAATGAGATAAAGCAAATTATTATTATTATCTAGTGAATGTTATAGAATAAAAGTATTACTTCTTACCGTTCTAAAAAATGGTCGCTGTTCATCAATTGCGCGCCATATGACCTTTTTTACAATTAGACGAACTCTATTAAATTTATGCAGGAAGATCATTTATCAGAGGTCAAACAATAGATTTTTATTGTATGAAAAAAGGAAATCGGTGAATTTATTAGAACAATTAATAAAGAACCAATTCCAAGTCACAAGTATAAAGAGACTATCTTCATTTAGGAGAACCTTTTTTGAAAGTAACTTCATAATTGGTGCGAACCCCAAGCGAACATAAAAATCCTGGGTGACCCGCACCGCTTTTTTGACTTAATATGTAACAATGTGTAATTGGTTTAGCTAAAAATCTTACCTGAAGGCTAATTTGTGGTAATATTTAGGGGGAGAAAGGTGCTTTTAAGCGTTCTCCCGCT # Right flank : CTACAGGAATTGAGGGAATCTGTTTAAAAGGGTGGAAGGTATGTCTACAACTGACATGAAAGCAAGTATCAATCAAGATACGTTAGTGAAATGTGTGAGTCAGAAGCTTAAGCGTCCTTTAACAAAAGGAGAGCTTGAATGGAACGTACAAGCTTTATAGGGAGAAGTGAATTTTACAACGCAAGGCATTTACCGTGTTTTTGGTTCGACCCTTAAAAAGATAAAATGGTCGCTTATAATAAAAGTGATTCAAGAGGTAGAGGATAAACGGAACCCGCAGCACCATAATTATTGGAAACGAGAGGCTCTTATCCATCAAACTGGTATTCTTAATCGTTATTCGAATGTCATAAAAAGCCCAACCTGTTATGAGGTCGAGGAAAAAAGTGATGGTACGATTTGGATTTGGATGGAAGAAGTGAATGGAGTTCATAAGCAGTTCTCGAAGGAAGACTTTGCTGTTATAGCGAAATCAATCGGACATTTTAACGGAACGTACG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //