Array 1 101038-103971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEZ01000050.1 Streptococcus anginosus strain 1043_SSUI 209_186289_6452854_145_,...,75+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 101038 36 100.0 30 .................................... GTATTGGACAAAAGAACAAGCGTATGCTCA 101104 36 100.0 30 .................................... TTCAACTTCAGTTCTCTTGACTGGCGCAAT 101170 36 100.0 30 .................................... AAAATGATTCGGATTGCTTCTTTTCTCTCA 101236 36 100.0 30 .................................... AAGAGTGATTTCAATTCGTCAGAACAGACA 101302 36 100.0 29 .................................... GACCTTACTGCCGACCTCTTGCTTAACTG 101367 36 100.0 30 .................................... ATTTGCATTATTGGCTGGTCATTCGTTGAA 101433 36 100.0 30 .................................... AAGTGCTTTTAGTCAACTTTGCTGTAATTA 101499 36 100.0 30 .................................... TATTTCCCTTCAATGGATGGTGTTCGCTTC 101565 36 100.0 29 .................................... ATTTCCCTTCAATGGATGGTGTTCGTTTC 101630 36 100.0 30 .................................... TTTTGTCGTCAGAAACTAAATCATTTGTAT 101696 36 100.0 29 .................................... ATAATAAGATGTCACTTGTTCCACAAGCA 101761 36 100.0 30 .................................... ACAAATTGATAGACATGAGTAAATCATTTT 101827 36 100.0 30 .................................... AAATGCTTAAAGAGTATCAAGCGATAGTTG 101893 36 100.0 30 .................................... TTTTGTTACTCCATTTTGGATGGCAGGATT 101959 36 100.0 30 .................................... TTTGAGAGGTGGTGAGCGTCATTGGTGAGA 102025 36 100.0 30 .................................... CACGATTTTGGAGGCCCCAAGCAAACAATC 102091 36 100.0 30 .................................... CATTTAACCATTCTTCATTAACATTGATAT 102157 36 100.0 30 .................................... GAATAGTTCCTGGAACATCTTCCACAGCGG 102223 36 100.0 30 .................................... ATAGAAGCCCAATTCCAACCGCTTCCAATA 102289 36 100.0 30 .................................... TAAAATGTTCATACTTTCAACATCTACATC 102355 36 100.0 30 .................................... CTAATATGTTAGTTTCAAGTTTAATACATG 102421 36 100.0 30 .................................... CAAGGCTCCTCTTGTCCGGATGCCTAGCTT 102487 36 100.0 30 .................................... TTATGCAGTTATATTAGATAAAGTATACTT 102553 36 100.0 31 .................................... TCTTCACCTTTCTTAATCTACAAAGCTGGCG 102620 36 100.0 30 .................................... CTACATCTGAAAATAATGATGAAAGTACAG 102686 36 100.0 29 .................................... TTTTTTGTAAAATTTACATTATCATTTCT 102751 36 100.0 30 .................................... TTTATCCAGTTCTTGCTCTGCTGCCACCTT 102817 36 100.0 31 .................................... CTTAGAAACTTTATCAAAGGCTTAGTTGACG 102884 36 100.0 30 .................................... CTACCCAAAATCAACAATAGATATGGTTAA 102950 36 100.0 30 .................................... TGGTGTCTTCGTCATCAAGTTTGATTAGCG 103016 36 100.0 30 .................................... TCAAGAGCGAGCCGACAGCTGCAATCATTA 103082 36 100.0 30 .................................... CTGCATTTAATCGTGTAGCAAGTTATGGCT 103148 36 100.0 30 .................................... ACAGAACATCAATGAGGTTGTAGCTAAGTA 103214 36 100.0 30 .................................... TTGTCTTTTTGTCGTCATCAACAACGTATC 103280 36 100.0 29 .................................... TTTACAAAACGGAACAAATCAAAATATGC 103345 36 100.0 30 .................................... TTTTGTTTGTTTTGATAGTTTAACATCAGC 103411 36 100.0 28 .................................... CGTGTAATCGTCCATTATATATCTTGGG 103475 36 100.0 30 .................................... TAAATGTTGTGACAACATATACACCAAACA 103541 36 100.0 30 .................................... CTGAAACCGTTGAAGCTGATTGCTCGATGT 103607 36 100.0 29 .................................... TAGCGTCCGTGGCGCTTATTGTGGCAATC 103672 36 100.0 30 .................................... CTTTATTTACCCAAAAATCACCCAAAAAGT 103738 36 100.0 30 .................................... GACCATAACGTTCACCAGCCCATTTATTAT 103804 36 100.0 30 .................................... CGGCAACCTCATTTATCCCAATCTCAAGCG 103870 36 100.0 30 .................................... TATTATTGTCCATAATCAGCTTAATTTTCC 103936 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 45 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTAAGTTATTCCTCATTTGTAAAATGTTGTGAGCAATTACAGAGAATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTAGTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATAGTAACCTTGAAAATTATGAACAGTTTATACCATTATAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : CTACATTAGGAATTGTTTGATGTAAAAGAATTGTAATCTAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGCTGAAATGGTTTATAATGAAAAGTAGCAAGTATATTAGGAGGCCGTCTAATGGAGAGAAAAATTAAAAAATCGGTAGTTGCGACCGGTTTAGCTGCAACCACTATTATTTCAGGCAGTTTATCACATCAAGTAAATGCCGAAGAAGTAAAAACACAATCTGCTGAGCCAAAGACATCTGAAAAAATTACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGATGCAAGCCGATGCTGCAAAGGTTCAGACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTTAAAGGGGATGTAAATACTTCAAAGGACGCGGTGGCAGATAGCGAAAAAGCTGTTGCAAATGCTGAGGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCGACATCAGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 38424-35746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEZ01000009.1 Streptococcus anginosus strain 1043_SSUI 42_94271_3305011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38423 36 100.0 30 .................................... CATCACTTGGCAAAGCATCTAACGGGTGAA 38357 36 100.0 30 .................................... TTCGACCCCTTTTTTAGTTAATACTTTAAC 38291 36 100.0 30 .................................... CGATGACAGACCAATCACCAGTATATCCAT 38225 36 100.0 30 .................................... ACGAAACGATAGACCTAAACCTGACGCAAC 38159 36 100.0 30 .................................... TAAAATCACTGATGATGTTGAGTTCAACGA 38093 36 100.0 30 .................................... TGAAGAAACAGATGACTCTGCCTACTTTGA 38027 36 100.0 30 .................................... AGCGGTTCAAGTAGGCTCTAACAGTAGTGA 37961 36 100.0 30 .................................... ACTGAGACTGGGAAAAGTGCGTCTGCGGTG 37895 36 100.0 30 .................................... ATTAGGAGAACAAATCAGAAATATTCTAGA 37829 36 100.0 31 .................................... CTTTTAAAGCAGTAAATGATCATAAACAAGT 37762 36 100.0 31 .................................... CCCGTAGATTTATAGGAATCCATCCACATAT 37695 36 100.0 30 .................................... TAAACAGACATTATAGAAATCTACACCTAA 37629 36 100.0 30 .................................... AAAAAAGTTGGTAAAAAGTGTTGACATTCA 37563 36 100.0 30 .................................... AGAAAAAAAACCGTCACGAAACGACCAAAA 37497 36 100.0 30 .................................... TGAAAGAGCTTTCAAGCATTGAAAAGTTGG 37431 36 100.0 30 .................................... GCTTGTCTGCACGCATTAGTGCTGACAGCA 37365 36 100.0 30 .................................... AAGGCTTTGACCGAACATAACCTTTTTAGA 37299 36 100.0 30 .................................... CTTGCGCTGCTCGTTCTGCTTGTGCTACAA 37233 36 100.0 30 .................................... TTGCAAAGTCTTGCATTTCAGTCTTAGCTT 37167 36 100.0 30 .................................... TTGGTATAGCTATACAGGACTAGTCTTTAA 37101 36 100.0 30 .................................... AAAATCAATGCGATCTAACAGATAGTCTTT 37035 36 100.0 30 .................................... CAATAAATTCTTGATATGTATAAATACGTG 36969 36 100.0 30 .................................... TTGGGTCTGTACTGTCTGTTTGCGTGTAAT 36903 36 100.0 30 .................................... TGATACTAGTGCCAATGATGTTGTCGAAGG 36837 36 100.0 30 .................................... ACTATTTTCTGTGCTTTGATTTGTAACAGT 36771 36 100.0 30 .................................... TCTTATATATATTTCATATTTATTGGATAT 36705 36 100.0 30 .................................... ATTGAATATCTCGGAGACAAGACCGGTGAG 36639 36 100.0 30 .................................... TGAATTTGTACGAATAAAGCTATTTCCGTC 36573 36 100.0 30 .................................... TAAATGATTTTCGTAATTTCAATATGCAAG 36507 36 100.0 30 .................................... AAACATGAACATTTTACGAACATTGTTTGA 36441 36 100.0 30 .................................... TGAAACTATCAGAGTTTACTTCAACGGGAA 36375 36 100.0 30 .................................... AGAAGCTACTCAGCGTTTTACCAATAGATA 36309 36 100.0 30 .................................... CAAAGGGAAATTAAAGTCAGACTTTATTAT 36243 36 100.0 30 .................................... TCCGCTTGTAATTGGTTATGAAAATTTGCA 36177 36 100.0 30 .................................... TGAACTTGGCAATATGTACACAGATATTGA 36111 36 100.0 30 .................................... AAGATATTGTGGTTGAAAAGAACAGCGTTA 36045 36 100.0 30 .................................... TAATTTATAATGAATATGTAAGATAAATAA 35979 36 100.0 30 .................................... TGTTGGCTCAATTGCTGTAAATCTAAAAAC 35913 36 100.0 30 .................................... TAGAATTTATATAAAATAGGCTTGTGTTGA 35847 36 100.0 30 .................................... AATCAAGAATCAAGGATAAGCAAGCTGCTA 35781 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 41 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTATCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGATATAATATTAGTAAATATAAGGAATCATTTGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : ACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTGTTTTTATGCAAACATGAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGTCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATTCTCTATATGATTGGTGGATCGCCTTACAGCGGGAAGTCAACAATTGCTTTCCTTCTTGCTCGGAAGTACGATCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGTTGAGACATCCAAAGGAGATGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //