Array 1 22982-23875 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUP01000005.1 Streptococcus oralis subsp. oralis strain OD_332610_07 s_oralis_OD_332610_07_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22982 36 100.0 30 .................................... TTACCAACTGACTCCATTTTGTGGATATTT 23048 36 100.0 30 .................................... AATCATCTTAAAGATTGCTGTAGCCTGTTT 23114 36 100.0 30 .................................... CAAGCGAGGCGAAGAGAAGGCGAAGCCGAG 23180 36 100.0 30 .................................... AGCTGGCTACGGCTTTCCAAGTAGCATATT 23246 36 100.0 30 .................................... TTGAAATCGATGGCGACACGCAACCCTTAC 23312 36 100.0 30 .................................... ACTATATAAAGAGTTATCACCAGCACCATC 23378 36 100.0 30 .................................... GCCTTCCTTGAGCATGTCAGCGTATTTTTG 23444 36 100.0 30 .................................... TTTTACTTTGTTTGCTAAGTATTCTCGCAA 23510 36 100.0 30 .................................... TTCCATTTCTTGTGGAAAATCATATTTTGG 23576 36 100.0 30 .................................... ATGCTGTCAAAGATTCCAGCTACACCGTCA 23642 36 100.0 30 .................................... TTGACGTTTGGCGAGGTCCTAGAAGAACTT 23708 36 100.0 30 .................................... AAAGCGTGGAAATGGCAAGTTTCTGATAGC 23774 36 100.0 30 .................................... ATGACAATATCTATGCGAACCTGAAAAAAG 23840 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AAAGCTACTCATTCTTTGAGTAGCTTTTTAGCTATTCCCCTACACATAGCTCATTCCCTTATAGCAAAGGAAAACGGCTAGTGCGATAAAAAGTACAGTTGCTCCGATTCGCTGGCTGGTGCTATACATTCTTTTTTCCCATTTGACTGGAAAAATGACTGCTAGAAAGGCACCTCCTACTGAACCACCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAATACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAGCCCGTATAGGGAAGTGGATGCCCCAGCAGCGACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCAGATAATAGATAGAGAAAGAAGAACTGCTTAGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 791870-790432 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUP01000009.1 Streptococcus oralis subsp. oralis strain OD_332610_07 s_oralis_OD_332610_07_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 791869 28 100.0 33 ............................ TACCACTGCTCTTGCGATATTCTTTGCCAATCT 791808 28 92.9 33 ............T.............T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 791747 28 89.3 33 ............T.T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 791686 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 791625 28 96.4 33 ....................A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 791564 28 96.4 33 .....................A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 791503 28 96.4 33 ..........................T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 791442 28 89.3 33 ............T.T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 791381 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 791320 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 791259 28 92.9 33 ..............T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 791198 28 100.0 33 ............................ CATGATTATGACTATCAATGACCATGAGGGTGA 791137 28 96.4 33 ............T............... TACGCAAGACGTTTCAAGTGCTGCAATCCTTAC 791076 28 100.0 33 ............................ TGATAGAAGCCGATTGGGTTTGACTGCTCCACT 791015 28 96.4 33 ............G............... TTAAGTTCACTTCTTAAAAAAGATGAAGAATTG 790954 28 100.0 33 ............................ TGAACAAGACAAGCAAATCAGCAGTCTAGCGAT 790893 28 96.4 33 ...................A........ TGAATGGTATTATCTCACGAATGAAAACGTTGA 790832 28 96.4 33 ............G............... CAGTATTTTTAGCAACTTTAGCTTATCAATGGA 790771 28 96.4 37 .....................A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 790706 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 790645 28 96.4 33 ............G............... TGTAGACACATCCACAAGCTGGACAATCCCTCT 790584 28 96.4 33 ............G............... TACAGATGCTTGTATTCGCTTTATGGAAGTTAT 790523 28 92.9 33 ............G.A............. CTGATTATCTAGCCCCATCTCATAGATGGCCCA 790462 28 96.4 0 ..........................A. | C,TA [790435,790439] ========== ====== ====== ====== ============================ ===================================== ================== 24 28 94.8 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : ATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTTTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAGCTCAGATTATCGTTTCTATCGGTCTCGCCCAAAACTTTGCGGCCCTCAAAGCCTTGGTGAGTACGGGCATCCAGCAAGGTCACATGAAGTTACAGGCCAAATCCTTAGCTCTCCTAGCAGGTGCTAGTGAGTCTGAAGTTGCTCCCCTCGTTGAGCACCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCTC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //