Array 1 39146-38758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJEG010000002.1 Pseudoalteromonas sp. SR41-6 NODE_2_length_266459_cov_10.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39145 28 100.0 32 ............................ ACTTCAACGGGTAAGCAATGCAAATATTCAAA 39085 28 100.0 32 ............................ GCAGCTAAACGAAAGTCAACTAAAGCATCCAT 39025 28 100.0 32 ............................ GGTAAAGCTAAGGCAGAGCGTAGAGCTGAAAA 38965 28 100.0 32 ............................ TCCCACTGTCACTGAACCATACCCAGTGTTAG 38905 28 100.0 32 ............................ GTCACAGTAATCTATAGATATTAAACCCGACA 38845 28 100.0 32 ............................ ACGGACAACCAGTATCAGCCCTGCAGCTTCGA 38785 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTTACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGCACACAGAAAGTATGTTTGATTTTTGATCTAAAGCAAATAGTTCAGGCAGAAAGGGAAGTCTGTTTGTGAGCCTCTCAGTTAATTTAAGATTAGCAAACTCAAAGTGAATACCTTACATAGTTAAACTCACCTTCATGTAAGAATAGACCCCGCACCATGTTTAGCTCAAAACAACGTACACATTTTTTCAAACAATGTAAATATGTACTTGGTGCTGCTGATAATCCTTATCTAGATTTGTTCAGCGGTTCAACAGAACAAGTGCATCGCAAATTCTTTGCGTTTAGTGATTTAAAAGATAAACCTATTGATGGTAAGTTTGATTCTTATGGATTAAGTAAAGTTGCCACGATACCTTGGTTTTAACCCTTTATTTTTTCTCTTTAAAATTTTCTATAAAAACAATGGGTTATAACATATCGTTTTTGATAAGGTAAAATAGTAATATTTAACCTAATGGCTTGTTGTAACTTATTTTTATGCTGATATTCTATA # Right flank : ACGAGGGACCGACAAAAATATCGGGAATATTTTGGAACTGCGAAGCAGACCTTTATGGCGAAGGGCAGGACGCCTAAAGTAAACGACATATCTAGTAAAGAGTGCAGCGCGAAGAAGTGAGGTCATGGCAGGTTTTTGTTCCCGACAAAATCTAAGTACCTAAATCCATTTAGGCAATGACCGATGTAACCAAGCTCCATGGATGGATTCAAACGCCGATGTTTTTTTTCGCGCCAGCAAGCTTAGCGCCTACGACACAGGCAGCTTAGGTGGCGAGGCAGTGAAACGAGTTTTTTGATCACTATTCGGCGCTAAAGCGCTCTTCTACAAGCCACACTACGGATGCTTACGGCGACGATATGCTTAACGTGCTAAGCACGAGCTACAAATTATTTCATGGTTTCTCATTTACCCTCACTGTCTGTTTTTTGTGCAACAAATCGTTAAGTTCTAGGAAAATGATTTGCAGAGCTGCATTTGTATGCGCTGAAGAACTGTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51458-51605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJEG010000032.1 Pseudoalteromonas sp. SR41-6 NODE_32_length_54592_cov_9.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51458 28 100.0 32 ............................ TGGTAAATCTTTTCTAAAGCAAACATTGCGTA 51518 28 96.4 32 ..A......................... AAAAACTCACAGGCATGTTGATGGTGATTTAT 51578 28 96.4 0 .........................G.. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTGACCTGCCGTATAGGCAGCTGAAAAT # Left flank : TTGTGGCTTTTTTAAATTAAGCCAAGTTTTAGCCGTACCTGAAGACTGCCAAGAAATACGTTTTATACGTAATCAGGCGGTAGCAAAAATATTTACAGGTGAAAGTAGAAGAAGATTAAAGCGTCTGCAAAAAAGAGCCTTAGCAAGAGGTGAAGACTTTAACCCTAAAAAGCTCGCAGCCCCACGTGAGGTTGATATTTTTCATAGGGTAGCTATGACTAGTAAGAGCTCGCAGGAGGGTTATATTCTTCATATTCAAAAGCAAAATGCCGACTGCCAAGCAGAGCCAACCTTTAGTAATTATGGTTTTGCTTCAAATGAAAAGTTTAAAGGCACGGTTCCTGATTTATCACCGTTTATAGAAAGCAATTAACCTTTATTTTTGTCATAATTATAAGTTATATATATTAATGCGATATAAGCAAGCATTTTAAAAATGGGTAAAGTTGAATTTGCTTTTTAATTATATGAATAAATTTAGCTATTTAGCTATTTTGATA # Right flank : TAAAAACAATCGATTCGATGTTTACGTTAATGTACTTCTGCCGAAAAGGCAGTTGCTAGCAATATAAAACCAGCCTTTTATTTGAGGGCTGGTATTTTATTTTTGCTTTAATAAGTAGATTTATATTTAAGGTTATTCACTCTGTTTTTAGAGAGTATTAAGTTTCCTAATTAATAACGGTGGGCTAACATCCTAGGAATAAGTAAAACATATTTGCTATAAGTACAAATCAGTGGCCAAAATTAGTCGATCGCTACAGTGAGCCCTACAAATCCCCCTCATCCAATGAACAACAACTGACCTACATTTTCTTATGAGTTCATCAATATAACTTCAAAGGAAACGAGCAATTTAATGATCCACTGCACTCTTACGTATCTTCACAACATTAGTAGCATTTTGAGTAAATCGATGGAATTAAGTAATGACTACGAAATTATTTGGTTGCATAATTATAAGGTTATCAAGCCAAACAGCTAAGACGTATACTGATGCTAAAT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCTGCCGTATAGGCAGCTGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 21642-19514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJEG010000045.1 Pseudoalteromonas sp. SR41-6 NODE_45_length_37570_cov_11.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21641 28 100.0 32 ............................ GTCAGCATTTAGATAAATACATTGCATAGTGA 21581 28 100.0 32 ............................ GCAACAGTGCAAGCATCAGCAGTTTCGAGATT 21521 28 100.0 32 ............................ GCCGAGCCAATCATTGAGTTAGCACCGCCAAC 21461 28 100.0 32 ............................ GACGGGTAATTTAGCAGTCAATGACGGTATGA 21401 28 100.0 32 ............................ ATAGCGCCAGTTACGAACGCTGCTACTGTAGT 21341 28 100.0 32 ............................ AGAACTAGAAGCACCATGTGACCCTAATAAGA 21281 28 100.0 32 ............................ GAATGGAATTCCGGCATACATGAACTAGTTAA 21221 28 100.0 32 ............................ TAAACTTGCAAGCTCTAGCTGCTGAACGCGCG 21161 28 100.0 32 ............................ AGAAAAAGATAAGTTGGCCAAAGACTTTATAA 21101 28 100.0 32 ............................ GCTGAGGTTTTCGCCTATACCCAACAAGCACG 21041 28 100.0 32 ............................ GCTGAATCGTTTCGGTTAGTATCGCCAAAGTT 20981 28 100.0 32 ............................ AATACTAATACTGTCCGACTTGGCGGCATTAC 20921 28 100.0 32 ............................ TACGTGCTGTAATCCCTAATTCAGGGGATATT 20861 28 100.0 32 ............................ ATAAGTCCATCAATATCAATTTCGACTTAGGA 20801 28 100.0 32 ............................ ATCCCTGCACCCACAGGGTATTGGATTTTAAC 20741 28 100.0 32 ............................ ATGTCTTTAAACGCACGACTTACGCGGCTTAT 20681 28 100.0 32 ............................ TGCACATCTTCTTTAGTAAAACCCTCACTAGC 20621 28 100.0 32 ............................ AGAAGAAATACGGCACCGATATTCATAGATTC 20561 28 100.0 32 ............................ TTGAAAGAATGAAAGAAATACCGAGCGGTAGT 20501 28 100.0 32 ............................ AAAGTCGTTTAAATCAGACTGTGCGCGGTTTA 20441 28 100.0 32 ............................ CTCCAAGCCAGCGTTTAAGTCAATGGCATCAA 20381 28 100.0 32 ............................ TTGATTACCCTCATTAGTGCCTTTTAGTGTTT 20321 28 100.0 32 ............................ AGTACCGCTTGTGGCTGTCGGAGTATCAAACC 20261 28 100.0 32 ............................ TAGGCTTGATTGGTACTCAGAGTGGTGCAGTA 20201 28 100.0 32 ............................ GCTTAGTCCATTTTTTAACGAGCTTATTGGTT 20141 27 96.4 32 .......-.................... AACTTGTGCTTGTAGTGTTTGCTGCGATTCGG 20082 28 100.0 32 ............................ ATCATGGATTGATGTTGGCGCAACAAATAGAT 20022 28 100.0 33 ............................ ATAGTGCTTGGCCTTCCTCATTTTGTGATGATA 19961 28 100.0 32 ............................ GCCAAGATTTTGCAGAAAATTGAACTAAATGG 19901 28 100.0 32 ............................ GTGTATATATAGCACTTTGCAGCCTTTTATAA 19841 28 100.0 32 ............................ AGATTTAAACGCCATTGCTACACCAACAACGA 19781 28 100.0 32 ............................ TGCGGGATAAGCGCGGTTTAACGGTGTTAGTA 19721 28 100.0 32 ............................ CACGAAGGCAAGGCAGATATTGACGCTATGAG 19661 28 100.0 32 ............................ CACGAAGGCAAGGCAGATATTGACGCTATGAG 19601 28 100.0 32 ............................ TGAGTATCTCGCCTCGGGAATTGAATTGATAC 19541 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.6 32 CTTCACCGCCGAACAGGCGGCTTAGAAA # Left flank : CGTTTAGAAGAACTTGAAGCGTTACCATGGCGACGAGGTTTAGGAGACTTCACCTTAGTCACTAAGGTAACTCAAATTCCAAGTACCAATGAGTTTTGCCTTGTAAAGCGAGTTCACGTGAAAAGCAACGCTGACCAACTGCGTCGCCGAGCAATGAAACGCCATGACCTCACTTACGAAGAAGCGGTGGAACGCATTCCCAAAGATGTTGAAAAGCAGTTGGAACTGCCCTTTGTCAGAATCAAGAGTAAATCAACGGGTGATCAACAATTTCGATTGTTTATCAAACAGACTTTCACAGCATCAAAAGATGAGGCGGCGAACTTCTCCAAATACGGATTAAGCGCCACCAGCACCTTGCCTTGGTTTTAACCCTTTTTTTAGGCACAATGCCAAACCCTTATAAATAGGGGCTTGGCATTTCTAGTTAAAAAAAGGGTATTTTGGTCAAAATTAAAAAAGCTCTTTAAAAATCAGATGTTTAATGCTAAATTATTCTA # Right flank : ACGAGGGACCGAAACGACATATCTAGCAAAAAGTGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGACGGATTGTTAACACCGCAGTTTGTTTGAAGTACTGTCGCGCCAGCAAGCTTAGCGCCTACGGCACAGGCAGCTTTGGTGGCGATGGACCGAAAGGGCATACCTAGCAAAGAGTGCAGCCTGAGGAAGTGAGGTCATGGCAGATTTTTGTTCCCGACAAAATCTAAGTACCTAAATCCATTTAGGTAATGACCGATGTAACCAAGCTCTATGGATGGATTGTTAACACCGCGGTTTGTTTGAAGTACTGTCGCGCAAGCAAGCTTAGCGCCTACGGTGGATAATATTGAAAATGGTGTTGTATATTTGTGCGCCAGCAAACTTAGCGCCTACGGTGGATAATATTGAAAATGGTGTTGTATATTTGTGCGCCAGCAAACTTAGCGCCTACGGTGGATAATATTGAAAATGGTGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGAACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //