Array 1 32900-34208 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYVD01000027.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001590 contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32900 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 32961 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 33022 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 33083 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 33144 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 33205 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 33266 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 33327 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 33388 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 33449 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 33510 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 33571 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 33632 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 33693 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 33754 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 33815 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 33876 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 33937 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 33998 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 34059 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 34120 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 34181 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50915-51307 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYVD01000027.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001590 contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50915 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 50976 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 51037 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 51098 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 51159 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 51220 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 51281 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12075-11190 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYVD01000038.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001590 contig00038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12074 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC G,C [12052,12065] 12011 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 11950 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 11889 29 100.0 31 ............................. TTATTTTTTATTCGATATTGTTTTTGAATAT 11829 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 11768 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 11707 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11646 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11585 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11524 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11463 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11402 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11341 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11280 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11219 29 93.1 0 A...........T................ | A [11192] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTTCCCTAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //