Array 1 48-555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBW010000001.1 Wohlfahrtiimonas chitiniclastica strain DSM 105712 NODE_1_length_381332_cov_182.620892, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48 28 100.0 32 ............................ ACCCGTAAAAATCAAAAAAATCAATTTAAAAT 108 28 100.0 32 ............................ ATAGATTGATTCAATTAGGCGGTTTGGTTGAA 168 28 100.0 32 ............................ AAGAGGTCACACCCACCAAAAAAGGCGCTCGG 228 28 100.0 32 ............................ GAGCAGGGGGAAAAATTGTAGATACTCGCACA 288 28 100.0 32 ............................ ATACTGCGATAGGAGAATACTCCCCAACTCCC 348 28 100.0 32 ............................ ACTGGGCGTATGACATCGAAACGTATCCGAAT 408 28 100.0 32 ............................ GCAACAGCATAGTGCAGATTTAAAGCGTGATG 468 28 100.0 32 ............................ ATAACCTGTGCGATAGTCATCAATGAGAATTC 528 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGGCAGCTTAGAAATCAACTATTTTCCAATGATCTATTAATCCAAAG # Right flank : AAGTGGTTCCATGGTGAATTTGGAAAGTTTGGGGTTCACTGACTAAAAATTGAGAGTTTATAAATGACATTACTAAAAGTGTTGGTACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCGGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAACATTAAAATGTCCATCGATATGTATGACAATGGCGTGATGGACATAGGTGTGAATGCAGAAATTGAAAATAAAAATGAAATTTCAGACAGATTTAAACATTATTGCGGCTATGTGCTTGGGCGTTTATTCAGTGGTCAGTTGTATAAACGCGGCTGTGTGAATAATGAGCATTTTGGTACAAGCAGCCATTAAGACTGTTGCATTTGTAGCCATTGATCAAGCGCGTTGGCAAATTGTTGACGCTCTTTTTGTGATAATGGTGGTGGACCTGAAGTTTGTACGCCACTTGAGCGTAATTCATCCATAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2540-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBW010000004.1 Wohlfahrtiimonas chitiniclastica strain DSM 105712 NODE_4_length_216921_cov_216.413053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2539 28 100.0 32 ............................ TTTTTTTTTGAAAACCTTTTTCAAAACCTAAA 2479 28 100.0 32 ............................ AATTTATTTTTGATCTTTGATCGCCTTGATCG 2419 28 100.0 32 ............................ TGTGCCAACAATTCATGATAACCCATCATGTC 2359 28 100.0 32 ............................ TATTGGAAAGAACCCTCCAATAGAACGAGCGT 2299 28 100.0 32 ............................ TATTGGCAAGAACCCGCCAATAGAACGAGCGT 2239 28 100.0 32 ............................ CAATGATGATACGCTCGTTCTATTGGAGGGTT 2179 28 100.0 32 ............................ TTGTCAGCTTCTTTTCTTGCTTGGAGAAATTT 2119 28 100.0 32 ............................ TATTGGCAAGAACCCGCCAATAGTAGGAGCGT 2059 28 100.0 32 ............................ TGAAGCAATCCTAACCTTGACAAACGAAGAGC 1999 28 100.0 33 ............................ TTTGGGGGCTTGTGCGTTAGGGTCAGCCATGAT 1938 28 100.0 32 ............................ ATGTGTCGTTGGTGTGAATTGGAAGATGGTAC 1878 28 100.0 32 ............................ ACGTGGAAATATTGCTGACGGTATCACCGCAC 1818 28 100.0 32 ............................ GCATGGCTGAGGCAGAAGCCCGAGATCAAATA 1758 28 100.0 32 ............................ GTATAAAATACCTCAAGAGTTACAAAGAAAAT 1698 28 100.0 32 ............................ ACAGCGACTTCACTCAATAACAAGTCGTGCAT 1638 28 100.0 32 ............................ GCGGGAGATATGAAATGAGCCCATTAAAAGGA 1578 28 100.0 32 ............................ TCAACTATTTTCCAATGATCTATTAATCCAAA 1518 28 100.0 33 ............................ ACGCTCAAACGAAGCAAAAACAAAACCTTCTGA 1457 28 100.0 32 ............................ AACAATCTGTTTGACTAACCTAGATCGTGATA 1397 28 100.0 32 ............................ AGCGATAATTTTTTACGGGCTGCCTTTTCGCA 1337 28 100.0 32 ............................ GCCAGTTGAGATTTTAAACCTCTTCGCTTTCT 1277 28 100.0 33 ............................ ATCAGAAGTGATATCCTTATATGTGCTTGTGCC 1216 28 100.0 33 ............................ TCGATAGCTCTTGAATTCAATTATCGCTGCATT 1155 28 100.0 32 ............................ TTTTGCTGAATCCGCTTCGTTTCCCGGGCTCA 1095 28 100.0 32 ............................ GCTAGTGACTGTGATGTCATCACGATTCACGA 1035 28 100.0 32 ............................ CTCTTTTGGAGGGATTAAAAACAAAAAACACA 975 28 100.0 32 ............................ AGTCAAAGCCCTTTGCTATCGAGTCAATCGGA 915 28 100.0 32 ............................ ACGCACAAATTGGCATCCATACCGCGTTGAGT 855 28 100.0 32 ............................ AGCATGGTTCATTGATCCATCAGAATTTTGCA 795 28 100.0 32 ............................ TTTTAATGCGCATGTTCCAAGGTGCGGCAATC 735 28 100.0 32 ............................ TAATCAAAAAATCCCTCGCGGAGCTATTAACT 675 28 100.0 32 ............................ ATTACAATACAGAGCCTTTTCTCCCGATTTCA 615 28 100.0 32 ............................ TGTTGATTTACCTAAGTCCGCCGCAATGATCA 555 28 100.0 32 ............................ AAGAAATTTACGAGTAGGAGATAAGCCATGAT 495 28 100.0 33 ............................ CGTCGATTAAGGACTTTATGATAAGCCCGGATG 434 28 100.0 32 ............................ GTGATTGCTTTGCGCTGTACTACATTGAGAGT 374 28 100.0 32 ............................ CTCTCCTTATTCGTTGTACGGTAAAATTGTTT 314 28 100.0 32 ............................ ACTACTCTGCAAACAAGATTGTGCGTATATAG 254 28 100.0 32 ............................ TTTTCATTAGCTGTATTTAGAGCGCTATCCGC 194 28 100.0 32 ............................ TTCACGAGTAGACCCATAACGGAAACGAATGT 134 28 100.0 32 ............................ ACAATGGAACTCAAAAATGAGTGCTTATTAAA 74 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTCGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCCATTAAGCCGGTGCCCAATCGTGTGACGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGTCGCTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAAAGTAAAAGTGACAGCACCCACGGAGGCGGCAAACTTTACAACGTATGGTTTGAGTCATCATGCACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGTTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAAATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTTCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : ATCAACTATTTTCCAATGATCTATTAATCCAAAGTTCACTGCCGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 126979-125668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBW010000004.1 Wohlfahrtiimonas chitiniclastica strain DSM 105712 NODE_4_length_216921_cov_216.413053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 126978 27 75.0 174 .......ATG...A.C...-....T... GGTTGCGCGGTTGCAGGTGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGTCATTGGAAAAGGATTGGTTTTATGGCTATAAACTGCCGAAATCATGATGTTTCCAATGGCTCTGTAATATTTTTAATT T [126975] 126776 28 100.0 32 ............................ AAGACATTGTTAAAGAGTTAGATGCAATTTAC 126716 28 100.0 32 ............................ ATCGGAACATTGCCCGCTTACAAATTCAGAAA 126656 28 100.0 32 ............................ TTCTGATTTACAATTTCCATCATCATCAACGC 126596 28 100.0 32 ............................ TGAAGCAATCCTAACCTTGACAAACGAAGAGC 126536 28 100.0 32 ............................ AGTAAGCACGCCTCAGCCGATCAAGGCGCAAA 126476 28 100.0 32 ............................ ACTAGCCAACTATCACTTTTATGCAGTCAAAA 126416 28 100.0 32 ............................ TGATGGCTCAGGTGGTTACACTACGTTTGATT 126356 28 100.0 32 ............................ TCAATAAGTCGTCTGGTGCTCCGTACCCTTTT 126296 28 100.0 32 ............................ AGTATGATTTATTATTTCCCATACTTTACTTG 126236 28 100.0 32 ............................ GTACCACAAACAGCTATCGCATTACTTAATCG 126176 28 100.0 32 ............................ TCTCAAAACACGCCAAATTTAAACGAAACTAC 126116 28 100.0 32 ............................ TACAAAGCCGGTTTGACATCCTTTCTCACACT 126056 28 100.0 32 ............................ ATACTGTGCAATCAGTCCTAGCGCGTAAAGCA 125996 28 100.0 32 ............................ TGCGGCATGTTTGAATGTTTTGCTGATGGCAG 125936 28 100.0 33 ............................ ACTAAAGGTGATGAATTTAAGGTTAATGCTGGT 125875 28 100.0 32 ............................ AAGCCAATAAATATGGATTTGATCAAAATGAT 125815 28 100.0 32 ............................ GCCCAAGTGCGCCCAACCAGAAACCAAATAAT 125755 28 100.0 32 ............................ TTGATACTGGGAAGAAGGAGCCAAGGCAGGCA 125695 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 20 28 98.6 40 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAAAAAATTTCTGTGCGTATCGTCAATGAAGTTAAGCACGTGAACCGCATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTTTCCACGCATTGACATGAACACATAAAATGGCCTAGATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAGAAATTATGGATGATTACAACCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACTGCCAC # Right flank : GACCGGAGCTGTGCCATCGTAACGGGATTATGAACAGACAGTAAAATTAATGCTTTAAGTTACTCGCCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTAAACGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGTGCGCGGATGCCCACACGGTATTTACCGAGAGAAGATGCATAGCTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCCACATTGCCATAACCATGGGCAACGATGCTTTTGATCTGCGGTGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCAGAATGGCGCGC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.69, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //