Array 1 1-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVE010000087.1 Erwinia amylovora strain Ea5-97 Ea_5-97_contig_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 62 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : CAAGCGATCAACCTGTTTTTCAGTAGGTTTAAGTGTTCCCCGCGTGAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-1665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVE010000032.1 Erwinia amylovora strain Ea5-97 Ea_5-97_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 113 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 174 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 235 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 296 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 357 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 418 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 479 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 540 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 601 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 662 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 723 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 784 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 845 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 906 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 967 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 1028 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 1089 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 1150 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 1211 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 1272 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 1333 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 1394 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 1455 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 1516 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 1577 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 1638 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CGTGAGCGGGGATAAACCGACAAAAGACAACACCCCCCTTACCCCCCCACGG # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12573-14556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVE010000032.1 Erwinia amylovora strain Ea5-97 Ea_5-97_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12573 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 12634 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 12695 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 12756 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 12817 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 12878 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 12939 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 13001 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 13062 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 13123 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 13184 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 13245 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 13306 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 13367 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 13428 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 13489 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 13550 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 13612 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 13673 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 13734 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 13795 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 13856 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 13917 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 13979 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 14040 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 14101 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 14162 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 14223 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGAGCT 14284 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 14345 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 14406 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 14467 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 14528 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24020-24348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVE010000032.1 Erwinia amylovora strain Ea5-97 Ea_5-97_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24020 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 24080 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 24140 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 24200 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 24260 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 24321 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //