Array 1 24132-25420 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXL01000053.1 Pseudomonas aeruginosa isolate Y, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24132 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 24192 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 24251 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 24311 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 24371 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 24431 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 24491 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 24551 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 24612 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 24672 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 24732 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 24792 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 24852 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 24912 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 24972 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 25033 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 25093 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 25153 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 25213 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 25273 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 25333 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 25393 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35824-34294 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXL01000053.1 Pseudomonas aeruginosa isolate Y, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35823 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 35763 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 35703 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 35643 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 35583 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 35523 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 35462 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 35402 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 35342 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 35282 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 35222 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 35162 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 35102 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 35042 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 34982 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 34922 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 34862 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 34802 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 34742 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 34682 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 34622 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 34562 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 34502 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 34442 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 34382 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 34321 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //