Array 1 96499-94761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXXC01000029.1 Escherichia coli isolate swine fecal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96498 29 100.0 32 ............................. ACACACCAAAATATTCTGGTGTTTGTTAAGGG 96437 29 100.0 33 ............................. AAATCCAAAAAACTGGGGTATGGTGGCGTGTGG 96375 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 96314 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 96253 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 96192 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 96131 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 96070 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 96009 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 95948 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 95887 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 95826 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95765 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 95704 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 95643 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95582 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95521 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95460 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95399 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95338 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 95277 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 95216 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95155 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95094 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95033 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 94972 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 94911 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94850 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94789 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123392-122204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXXC01000029.1 Escherichia coli isolate swine fecal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123391 29 100.0 32 ............................. ATATCACTCGACGACTACCACGCGAGCTGTGA 123330 29 100.0 32 ............................. ATCATTCACTACCACGGCTCTCCGATCTGGGG 123269 29 100.0 32 ............................. CAGCCTCGCTGGCGAGCACCGGATCTGCGATA 123208 29 100.0 32 ............................. ACATTACGACCGGCGATTGTTCCGACGCGGAT 123147 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 123086 29 100.0 32 ............................. CGTTGGCCGCCATCAAAAATGGTACAACCTCG 123025 29 100.0 32 ............................. TGTGAAAACTCCTTTGTTACGTTATCGTTAAT 122964 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 122903 29 100.0 32 ............................. ATTTCAAATCTCCCAGGCGCGACATGACGCCG 122842 29 100.0 32 ............................. CCGATCCGCTGGCGGTGGGCGCAAACCAAACC 122781 29 96.6 32 ............................T ACTCGTTCCGTGCCGTCGCGGTGAATCGCGTC 122720 29 100.0 32 ............................. CCATGTAGTCAGGCATATGGCTGTTTGCGTAT 122659 29 100.0 32 ............................. GCTTTACCTTTATCCGACCGTTATGCCTAAGG 122598 29 100.0 32 ............................. CCTGTGAGCCTGTCAGCGTCGAATAAATATAA 122537 29 100.0 32 ............................. TCACCATAGGCTTCATAGACGGGAACTACTGG 122476 29 100.0 32 ............................. AGTTTACCGGAGAATAGTTACCTGCAAGTCAT 122415 29 100.0 32 ............................. TCGGTGCGGTGGGCGCGGCGTCGTTCAGGATC 122354 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 122293 29 96.6 32 .A........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 122232 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //