Array 1 9204-6976 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGT01000042.1 Lactobacillus helveticus strain IMAU30038 Scaffold42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9203 29 100.0 32 ............................. ATAATTTCTCATGATCGTCTCCTATCTAACAC 9142 29 100.0 32 ............................. GGGGTTACAAACCCGGTGTCGAAAAATATGCT 9081 29 100.0 32 ............................. TGACTTTGCTACTACCTGCATGTTTACCTCCT 9020 29 100.0 33 ............................. ATTTAAAGGGCTATACTCACTTACTCAATATAA 8958 29 100.0 32 ............................. AACTAGCACTGAGTAGAATTGGTTTGCCATCG 8897 29 100.0 32 ............................. GGGTGACGATACCCAATATGCACCGGAAGAGA 8836 29 100.0 32 ............................. GTTAGGTACTTGGTTGCCGTAGCGGTCAATCG 8775 29 100.0 32 ............................. TACAACTAATGATGATAAATATCTTATTGATT 8714 29 96.6 32 ............................C ATGCCACACGATGACAACGTCGACTCAATGGT 8653 29 100.0 32 ............................. AATCGTTGACGGATTTAGTGCTTGTATCATTG 8592 29 100.0 32 ............................. ATAATAATCGCTGTTAAACATATCCTCAAACA 8531 29 96.6 32 ............................C TAGAAATGGATTCCGAATCGTAATTCCAAGCA 8470 29 96.6 32 ............................C AAATTATGAAAACCTAGCATGGAAAACAAGCG 8409 29 96.6 33 ............................C AGCAAACAGATGGCAAACTTGAACAAAAGATTA 8347 29 96.6 32 ............................C GTACGGGTGGGAAGACGCTGTCGCTTGCTTAG 8286 29 100.0 32 ............................. ATGATGAAAAAAAGCGCCCCTTATATTTAACG 8225 29 100.0 32 ............................. GACAGTTGGCACTTATGTTATGCACAAGGGGC 8164 29 96.6 32 ............................C CACTTACTCTTAATGCCAGACAGGGTTTCAAA 8103 29 100.0 32 ............................. TAGACCAATTTTTTCTTCCTATAATACAAAAA 8042 29 100.0 32 ............................. ATCACCTGCTGTAACACCCATTGATGTTGATG 7981 29 96.6 32 ............................C TAGTGTGATGCCAGCAGCCATATGGTCTACTA 7920 29 96.6 32 ............................C AGTAAAACAATTAAACTTGAAACATCCATTTT 7859 29 100.0 32 ............................. AACACCCTCAATTTTAGTCTGCCAAGCATTAA 7798 29 100.0 32 ............................. CGTGGCCAATGGTGGCGCTAACGACCGACAAG 7737 29 96.6 32 ............................C TTTACAAGTCTGTGCGAATCGGTTGCAATCGC 7676 29 100.0 32 ............................. TTGATTTGAGCATCTAATGCTTTAATCATTGA 7615 29 100.0 32 ............................. ATAATGAAGCTTTGCAGAAAAATGAAACCAGA 7554 29 100.0 33 ............................. GACGGCAACGTTACCAGAACAATCAACCAAGTC 7492 29 100.0 32 ............................. GCTATATTTTAAAATTGAAAACCATGATAAAG 7431 29 100.0 32 ............................. ATTTCAACAAAGCAAATGTTATTGGTTTTACA 7370 29 100.0 32 ............................. TTTGACAATGATTTTGACAGGTATGAGAATTG 7309 29 100.0 32 ............................. AGGGTAGACGAAAAGCACCGATGCCAGTCGGT 7248 29 96.6 32 ............................C TCAACTGGTTGGTATCCAATTGCCCCTGCTGA 7187 29 100.0 32 ............................. TTGTTGACCATTTCAATACCTGTCTTTCTGTT 7126 29 96.6 32 ............................C TGGTATAATTAGTTTGTAGGTAAATTCCTACA 7065 29 89.7 32 ...............A..........TT. CGCGCTCAATGTGTTCAAGTGCGTCATTGGCA 7004 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCAACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTGTTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGTTGGTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : ATTTTTGCTATAAAACTGCTGTAAAAATATTGTGTGGAAAATGAAATCTATTTTGATACTTGGTATAAATTTGCAAAATGTTTTGGAATACCTAAAGAGTGTCACTACTTACTAGAATTGATTGCATGAGGTAAGAACCATGAGTAGGCTAATACGCCGCAGATCTATCACAAAATCTATTAAGGCTGAAACAACCGCAAAATATAAAAGGGAATTAAAAAAGAAAATTTTGCCTGGATACGGTAAAAAAGGAGCTGGGGTTGTAAAAGATCCTAAAAGAAGTATACGAAATGCTATTTACAATAGGACAACTTTAGATACAAGAAAAATTAGCAAATCTAAAAAGAAAGATTCAACCGATGATAATAAGCTAGGTTGTGGGTGTGCTACAGCTCTAGTTTTCTTCGGTGCTTTTGTTGGTCAAATGATTGGTGGCAATGTAGGTGGAGTAATTGGTGTAGTTCTTATGCTTATAATTGCTATTTGGGGAATGATATAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5253-3211 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGT01000044.1 Lactobacillus helveticus strain IMAU30038 Scaffold44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5252 29 100.0 32 ............................. CGGTAATCCGATTTTTTGTTTTCTTTCAACTA 5191 29 96.6 32 ............................C CAGTTCAACGGCCCTATCGTTAGATACTAGGA 5130 29 100.0 32 ............................. GGTAAAGGTCTGTGCGGCATTCTTGCCTAGTT 5069 29 96.6 32 ............................C TATTACGACCGTGTCAAAGCTTTTCAAGAGCA 5008 29 100.0 32 ............................. GGTAAAGGTCTGTGCGGCATTCTTGCCTAGTT 4947 29 96.6 32 ............................C TATTACGACCGTGTCAAAGCTTTTCAAGAGCA 4886 29 96.6 32 ............................C TACAATCAGTAATTGACGTTATATCGGGCTTA 4825 29 96.6 32 ............................C ACTTATGACAACAACTCATGGTTTGAAGTTAA 4764 29 100.0 32 ............................. TGTAAGTGTTAACCATGTGAAGAGACAGCGTA 4703 29 96.6 32 ............................C ACTTATGACAACAACTCATGGTTTGAAGTTAA 4642 29 100.0 32 ............................. TGTAAGTGTTAACCATGTGAAGAGACAGCGTA 4581 29 100.0 32 ............................. GCTACTACTGGTTCAACCTTAACAAGCGCAAA 4520 29 100.0 32 ............................. ATATTATCTGTCCTTTGAACGATATTAACAGC 4459 29 96.6 32 ............................C GATATTAACAGCAGACATAAATAAGAATAGGA 4398 29 100.0 32 ............................. GTATTTACGCGGTTTTGACCGTCCAATTTTAA 4337 29 100.0 32 ............................. GGGACGACGATCAGGAAGCCTATGTGCTTTGG 4276 29 96.6 32 ............................C GACTATGCAACTACGTTAGATGGTACGCTGGG 4215 29 100.0 32 ............................. GTATTTACGTGGCTTTACTCGTCCAACTTTAA 4154 29 100.0 32 ............................. TCTTCATCGCTATCGGTTGCAATAATTTCATG 4093 29 96.6 32 ............................C TATCAAATCCACGCCGGGTTGTTTCTACTTTT 4032 29 100.0 32 ............................. GGGACGATGATCAAAATGCCTACGTGTTTTGG 3971 29 100.0 32 ............................. ACAAGTTGTGATCTTTAAGCCATTTCTTGCTT 3910 29 100.0 32 ............................. GATAAAAAGCGCTGTTATTACTTTGATACCGC 3849 29 100.0 32 ............................. GATAAAAAGCGCTGTTATTACTTTGATACCGC 3788 29 96.6 32 ............................C TACGGTACAATCTCAACCTACACAATCACATG 3727 29 100.0 32 ............................. CGATACAATGCCGACAGGTTAACCGCCAAAAA 3666 29 100.0 32 ............................. ATGGTTGAATATATCAGGGGCGAAAGTTTGTT 3605 29 100.0 32 ............................. CTAAATGGTCATATGAAAATGTAAAGTTATTA 3544 29 100.0 32 ............................. GATGAATGGACAGAAGAAGAGGCAGACAAAAA 3483 29 96.6 32 ............................C AGATGATGCAGATGTAACTGTTGCATCAGATG 3422 29 96.6 32 .......T..................... TACAGTAACAGGTACAGCCAAACGTACTCGTC 3361 29 100.0 32 ............................. ACCTTATATTGATTCAACCAGCGCAGATTATG 3300 29 100.0 32 ............................. ACCTTATATTGATTCAACCAGCGCAGATTATG 3239 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAAAAATAATTGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCACTGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGAAAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAGCTTTCAAGTGCTATAAATAGTTCATATATGAAATAATATTTTACAAATTATGAGGAAATGAAAATGCAATTATCTAATAAGACTTTATCCTTATGGGGTAAGAAAAATGTTAATGATGACAATGAAAAAATGTGGTTACCATTAATTGCGCATTTAATTGATACAAAAAATGTGATCAATTGGCTATATAATCATTGGATCAATGATGGTCAAAGACATATTTTGCAACGGAATTTTGAAGATGAAGATATAGTTCAAAATTTAGTGAAGTTTTTGGGATATATACATGATATTGGAAAGGCAACACCTGCTTTTCAAATTAAACAGTCATATATCCATAATGAAGATTTAGATCAGAATTTAGTAGAAAAATTATTGCGAAATGGCTTTGATGGTCTAGATAATTCAAAAATTAAGAAAATTAATACAAGTAAGACGCCTCATGCATTAGCTGGAGAAGTTATTCTAGAAAACAACGGGTTAAATGAAAGTATAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1592-566 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGT01000075.1 Lactobacillus helveticus strain IMAU30038 Scaffold75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1591 36 100.0 30 .................................... GCACACGCTACACAAGCCGTAGCAGACACC 1525 36 100.0 30 .................................... GACGAGGATGGAAACCCAACCGAGTTCGCA 1459 36 100.0 30 .................................... TGGAATATGGACAGCGGAGACTTTATCAAG 1393 36 100.0 30 .................................... AGAACTTACAAAAAACATTGTTAGCAAAGA 1327 36 100.0 30 .................................... TCCAAAACACATAAGCAGACTATTGCACCC 1261 36 100.0 30 .................................... CAAGACCTAGAATGATATGTTGTGGGTGTG 1195 36 100.0 30 .................................... ACCAAAGCACAACGGTTAACTATTCGGGTG 1129 36 100.0 30 .................................... AAATAGAAATGGCTAAAAAACAGATTGAAA 1063 36 100.0 30 .................................... TGATACCTTTTTCAGCCATCTGCTTTGTAG 997 36 100.0 30 .................................... TGCTTATTACAGTATGGTGCCAGATGGCGC 931 36 100.0 30 .................................... TGGCTTCCTTACCGGTAAACCCCATAGCCC 865 36 100.0 30 .................................... TAGAGTTCGCGAAAAGTTCTTGCAAGCCAA 799 36 100.0 30 .................................... TTTCCTGAATAAAAATAAACTAAGAGTATA 733 36 100.0 30 .................................... ATGACGCAATATTATCAGTAACTAATCCTA 667 36 100.0 30 .................................... TAGTTCTGTGTTGTGGAAGTTTGCCAATTA 601 36 91.7 0 ..............................C.A..A | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : ACTAAAAATATAATTGAAAAATATATGCCGCATATTTTGAAAAGCTATATTCAGAAGTTAGATGAAGAAAATCGAAATAAGATATTTTCCGCGTATCATAATTTAGAGTCTTTATTACAGGATTCTTTACTGTTAGAAGATCTACCGTTAGAAATTGATTTTAATGAAGATTTGAAAAAGCTACTAAAAGCAGAAAACTTACATTTAGATGTTAAATTATTAAAGGAACCATATGTTATAATTGAATCGATTCTAAAGATTCATCAGATGTGTAAGATAGATTCAGTTCCTGTGATATGTAATGTCGCTAATTACTTAAATTCACAGCAATTACAAGAACTATCAAACTTAGTAAAACAAATGAATATGAAGCTCGTTTTAATAGAATTCACAGATAAGGATTTTCTGATTGTTCCTAAAAATGCTGAATTCTTCTATATTGACGAGGACCTTGTTGATTGGTATTGATCATCAGATGAGAAAAAGATTATAAAAAATCG # Right flank : CACAAAATAAATTAGCTATTTACTGAGACTATATGTTCACAGACTTGTGTGATTAAAAAATTGGTAGGCTCTATTTCAGAATGATTATGTAGTAATACGTAATCATTCTTTTGGCTCTTTGTCAAATCCTGTTGATAGAGAGTAAATGAATAGAATCAAGCGGCCATTAAAAGGCTGTTTGGTTCTTTTTCTTTAAACAAGTTTTCCTCTAAACGAATTCTGGTTAAAAGATTGATAAAGTTAGAATAGCCGAAGGCTGTTCGCTCAATTTGTTTGATTTTGCAATTGAAGCCTTCAAGGCAGCCATTGGAGTATGTCAAAGCTGCTCCGTTGAGTACCGCTTTTAGATTATGTTTGAAGGTTAGTAGCGTTTTATGCATTAAAGCTCCAATGGAATCTTTGCTGGCAATTAATGATTCAATTTTCTGAGTATCGCCGTCTTCAATCGCCTTAATAAAGCTCTGCATCAGATTATATGAGTTTTCTAATGTAGTGTTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //