Array 1 2881885-2878867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030233.1 Salmonella enterica strain SA20101045 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2881884 29 100.0 32 ............................. CTATCACCGCGACGCATAGCCTTACCTATTTC 2881823 29 100.0 32 ............................. ATTATTGATGGTCATCATCGTTTCCTGGGGGC 2881762 29 100.0 32 ............................. TGCCGGATTGCCACTGGCGAGCTGTTCATTGG 2881701 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 2881640 29 100.0 32 ............................. GCGATCGGCGGCGAGTGGATTCACCCTCACAT 2881579 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 2881518 29 100.0 32 ............................. CTCAAGGAGCAAGGTCTTTTTCCCTGCCCATC 2881457 29 100.0 32 ............................. GTAATAATTGGCGTCCTAATGGTGGAGTTCAT 2881396 29 100.0 32 ............................. GACCGCCAAAAAAGACGGGTCTGATCTGAACG 2881335 29 100.0 32 ............................. GCGGCCGGTTTGATTTAAGGGGGGTTTTATGA 2881274 29 100.0 32 ............................. CCTGGAATACTAATCCGTGGGTGTGGGTGATT 2881213 29 100.0 32 ............................. CCCTGCGTCAGTGCGGCAAACGTCACCTCGTC 2881152 29 100.0 32 ............................. GAGAGCAGTTTGCTCACTACCGGGGCAGAAGG 2881091 29 100.0 32 ............................. CATCGAGCTATTCAACTCAATAGCCCGGTCGA 2881030 29 100.0 32 ............................. AAGGTTGCGACGGCGTAGCCAATCACGGAACA 2880969 29 100.0 32 ............................. CGCGCTGTTTCAGGGTCGTGCGGCTGTTTTTG 2880908 29 100.0 32 ............................. CGGCGCCCTGGCAGAATAAACACCGTGGAACA 2880847 29 100.0 32 ............................. CGGCGTTACGCCATCAGGGGCCAGTAACTGCC 2880786 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 2880725 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2880664 29 100.0 32 ............................. GGGGCGCGGGTTTACGGTTTTAGCGAAACGCC 2880603 29 100.0 32 ............................. AACAATCTCGCGGCCGCGAAAACCCTGCTGGA 2880542 29 100.0 32 ............................. GCAAACATGTTGATCGGGATTCTGGCCGCACT 2880481 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 2880420 29 100.0 32 ............................. GCGACCGGTTGCACGCCGTGGCCCGGCCGTCG 2880359 29 100.0 32 ............................. GATATGGGGCTGAACCTCGATTTATTTAACAC 2880298 29 100.0 32 ............................. CGTCTGATCCTCGCTATCTGGATATGGCTGCG 2880237 29 100.0 32 ............................. AGATGCTGGCCGGGTTGCAGGGTGGCAGTGAG 2880176 29 100.0 32 ............................. GTTGGTTCAGTTAATTATTAGTGAGCTGCGGG 2880115 29 96.6 32 ............................T TGATGTGGTGATATCACCGATTTATCCGTGTC 2880054 29 100.0 32 ............................. CCCTGCGCCAGATCAACCTGATTAACCTGTAC 2879993 29 100.0 32 ............................. GGCGACGAAGAGGAGCGCTCAGCACGAATGAT 2879932 29 100.0 32 ............................. GTGACTGCGCCTGAATTCATTAAAATTAATGG 2879871 29 100.0 32 ............................. GATTCCGCAGAGCTTCACCGATTACGCAATGA 2879810 29 96.6 32 ............................A AATCCTCGTCCACCCTTCGCGCGCATGTGCGC 2879749 29 100.0 32 ............................. CCACTTGTTATGACCGGCATTATGTCGGGCCG 2879688 29 100.0 32 ............................. GCGGTCGGCGTCAGTAAATCGCAGGTTTCGCA 2879627 29 100.0 32 ............................. CTATCTTGATGTAACGGATGCGGAAATTTATT 2879566 29 100.0 32 ............................. AATGGATAAGAAACTGCGTTTGAGTTCCAGCC 2879505 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 2879444 29 100.0 32 ............................. GGGCGGGGAGGTGCTCAAAAGTCGCAGAAAGT 2879383 29 100.0 32 ............................. GCTGCGGCCTATATGGCTGTTCAGATGAAAAT 2879322 29 100.0 32 ............................. TCTAAGATTTGTTGAGTGGTTTTCGGGTATGC 2879261 29 100.0 32 ............................. CAGTGCACCAATAGCATTACGATTCTGATAAC 2879200 29 100.0 32 ............................. CATTACGGCTTTAGCCGTGATAACCCCCCTTC 2879139 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 2879078 29 100.0 32 ............................. AGGTAGTCGACCAGCTTTTTCCGCATCCCTGA 2879017 29 100.0 32 ............................. AGAGGCAGCAGCGTATATCCGTGGCTACGTTC 2878956 29 100.0 32 ............................. CATAAACTCGCCGATCCTCAGAATGAGCGCCT 2878895 29 89.7 0 ............T..............AC | ========== ====== ====== ====== ============================= ================================ ================== 50 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : CTTTCACCAGCATATCAGGACGCTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGACGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2899703-2898760 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030233.1 Salmonella enterica strain SA20101045 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2899702 29 100.0 32 ............................. CAGGGGGGCGCTTTTAATGGCAAAACTCATCA 2899641 29 100.0 32 ............................. TCTTCGTCGCTGGCGGTTCCCCAGTCCCCCTT 2899580 29 100.0 32 ............................. ACAAACCCCTGTTTTGTTATCAACAAACTGTG 2899519 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 2899458 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 2899397 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 2899336 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 2899275 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 2899214 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 2899153 29 100.0 32 ............................. AAAGCGGTTGCTATTGAGTCTCCCCTGAGCGA 2899092 29 100.0 32 ............................. CGCTGATTACTATACATAGTCAGCGGGCAATA 2899031 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 2898970 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 2898909 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 2898848 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 2898787 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //