Array 1 51151-52154 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWM01000018.1 Salmonella enterica subsp. enterica serovar Virchow strain NCTR409 NCTR_409_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51151 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 51212 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 51273 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 51334 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 51395 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 51456 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 51517 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 51578 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 51639 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 51700 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 51761 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 51822 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 51883 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 51944 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 52005 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 52066 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 52127 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68424-71687 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWM01000018.1 Salmonella enterica subsp. enterica serovar Virchow strain NCTR409 NCTR_409_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68424 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 68485 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 68546 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 68607 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 68668 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 68729 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 68790 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 68851 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 68912 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 68973 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 69034 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 69095 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 69156 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 69217 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 69278 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 69339 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 69400 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 69461 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 69522 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 69583 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 69644 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 69705 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 69766 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 69827 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 69888 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 69949 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 70010 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 70071 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 70132 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 70193 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 70254 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 70315 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 70376 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 70437 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 70498 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 70559 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 70620 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 70681 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 70742 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 70803 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 70864 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 70926 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 70987 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 71048 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 71109 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 71170 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 71231 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 71292 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 71353 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 71414 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 71475 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 71536 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 71597 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 71658 29 93.1 0 A...........T................ | A [71684] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //