Array 1 5972-5553 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972669.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 5971 36 80.6 42 ...A.G.A....AT...C................C. TAAAAAAGTAGGGCTAATTCATGAATTAGCCCTACCCTTATC T,A,AA [5948,5954,5961] 5889 36 100.0 37 .................................... GCAATCGCCTCGGGGTTCGTAATGACCGGAAACCCCA 5816 36 100.0 39 .................................... AGTTTAGAAACGGTATATTTTGACATATAACCGTTCTTT 5741 36 100.0 39 .................................... CCTTGAATCGCCTTGGCGTGACGCTTCGGTTCCTTTCGA 5666 36 94.4 42 ............A.....................C. TAAAAAAGTAGGGCTAATTCATGAATTAGCCCTACTCTTATT 5588 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 95.4 40 CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Left flank : GCAATGGGGGGATAAAAGTTCTTTAATCAACGATAATAAAGTCAGAGATTTAACTCATGTTCATCCCTTTATCAAAGATGTTCGCACTATTGCTAAACAATGGATGTCCTTACAAAAAGATATCCTCAGAACTCCCGATAATAGTGCTAACTGGCGAGAAAGTTGGCATCCTAAAAATGTCGAGGTTTGGGGAAGAATTGCCGAAGATAAAGATGATTCCCTAGCCATAAAATGGCTTCACAAAGCCTATCAAAAATTGGATAATTTAAGTATCTATAAAACCTCGGTGACAGGAATAGTAACAAAAAATATCAATCAAGTTGGTTGTCTTTGGCATCGAATGTATCCCAAAAATAATCATCAATACCTAGAATTATTAACAATTTTTCCCGATGACTCTGATGATTGTGCTTATTTTCTAGGTTTTCTAGACGAGAATAATGGTCAAGCGGGAAAATTTCAAAAACTTTGGCCGAAATAATCCCGTTTACAGTTAATTA # Right flank : CAGAAAAAGGGTTTCTAAAAGAAACCCTTTTTCTAATAAATTGTGTCAAATATATCTTGACAAAAATCGATAAAAATGCTAAAACCTAACGGGAATATTCGCTTTAAATTACGAACACCTTAGCAGTTATCCTAATAGTGAAGTAGTAAGTTTTCCTTTGGGGGAGTCAGAAACCGATCGCCGGTCAAGGAAAAACCCGAAATTCAACCTATTCCCTCGGATCAAAATCTGGCAGCGTCCCCAGCTTGCGAATGGTCACTTTAACATCCATAGATAAATAGTCATCGGCATCACCAAACCAAGAACCAGAAAGAGGTATGATTTGACCGGGATGACGAGCGATCGCCACTCGAATTAAATCAAAGCCGGCGGTAATTTGATTAGTCGGATCATAATTACGCCAACCGGCCCCCGGTAGATAAACCTGTAACCAAGCATGGGTAGCACCAGAGCCAGTCATCCCCACTTCACCACCGTCGAGGGCAGCATCGTAGAGATAG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 14349-15714 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972669.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 14349 36 100.0 36 .................................... ACAAAAGTTCGGAATGCCGAATACCAGACTACGACT 14421 36 100.0 36 .................................... GACTCATGAGGTCCAAGGCCTTATATATAACAATAT 14493 36 100.0 35 .................................... CCTCGTTCCCAGTGAGTCTGGAAAGGGTGGCCCCT 14564 36 97.2 35 ...................................T CTACACAATCAATGACTTTTTCCCATAACTCTTTA 14635 36 100.0 37 .................................... TCTGGATAATTTTGTTGGCAAAAATCTAGGATTTTTT 14708 36 97.2 42 ...................G................ TAGAAAAGTAGGGCTAATTCATGAATTAGCCCTACTCTTACT 14786 36 91.7 36 G...G..........T.................... TTAAAATAGGCGGCTTGCTCGTTAAGATTTCGTAAA 14858 36 100.0 36 .................................... ATTTTTGATGGCGGCTTGCTCACCATCGAGAGTTGA 14930 36 100.0 42 .................................... TAAAAAAGTAGGGCTAATTCATGAATTAGCCCTACTCTTACT 15008 36 100.0 35 .................................... ATTAGAGTCAATTTTCGTGAAATCAATATCAATTC 15079 36 100.0 36 .................................... ACTTAAAGCGTTCACCAAAAAAATCAGAGGATTCGT 15151 36 94.4 32 ...............T...................A CTTAATTTCGCCATTTATTTTTACCTTTTGAT 15219 36 100.0 42 .................................... TAAAAGAGTAGGGCTAATTCATGAATTAGCCCTACTCTTACT 15297 36 100.0 39 .................................... GAATAAAAACGCAATCGTCAAAGGCTTGCTTAATAGTTG 15372 35 97.2 46 ................-................... TAATCGGGAACCTCTACAGGAAAATAACCAGCATCGGCTATTTCTT 15453 36 100.0 42 .................................... TAAAAAAGTAGGGCTAATTCATGAATTAGCCCTACTCTTACT 15531 36 100.0 35 .................................... TCTGGAATATATTCCAAAACTGTAAGAGGCTTTTC 15602 36 100.0 41 .................................... ATTAAAACGAATTTCTTTAATTTCTGTGGATTTGGTACAAA 15679 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 19 36 98.8 38 CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Left flank : TCGCCAGAATCGGGGGATTTTGGGGGTTAAAAAATCCTTAAAAAAAACTCCCACCCCCGCTACCCTCCTTAATCAGTAGCTAGACAATTAATTACAGATAATTACTTAAGCAAAATTAATTACACATCGAGAGGCGGAAACTGTACGCTAAAGTAGTAGAAAGGGTCAATCCTCAAGAGGATGATGTGCGCTTCTATGGGATTTCCGAAGAAGCTGTCTCTAGATTATTGGTGATGGGAGGTTCTCCTCCTCAACCACCCCCAAATCTCTACATCATCTAGCTTGTCCCCTAACTCTTGACTGAAAATCGATGCACCCCCTCCCCGACCTAAAACCCCGATTCTCTGGTTGAGGTGCGTCGATTGCTCTCCCAGTCAGGGTTCTACCCTTTGGTATCGGGACTTTTACCCCCCCCGGGACCACTTTTTAACCCTCTTTTTGCAGGTGCGTCGATTTGGGGGTCTGTCTTCCCCTCTCGATGAGACTTTCCAAGGGGTACT # Right flank : CAGGCTACGATTAGCAAGGCATTTGGAACACCAGCAATTCTCATTTTGAAATAAATAGAGCATTAACCCCGATTTTGGCATTGAAAATAAAGTACAAAGTAACTATTTTATAGGAGAGGCGATCACTAAAAAAAACAATTGGCTGGACAAATTAAGTATAAATACTCAAGCAATCAAAGAGGTTGGCTGAGAATGAACGGGGTTAATTCAGGAAGATAGTTCTGTTTTTAGAATAGGGAATTCAAGGGAAATAAAAATTTATAATTATTGTCAGCTAAGGTAAAATGGGTGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAATCACGGTTATAATTTAGAGCATAACTTTGGTCATGGTCAGAATCATTTGTGCGAGTTCTTATTGTCTTTAAATTTACTAGCTTTTTTATTTCATACCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 43628-42363 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972669.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================================================================================================================================================= ================== 43627 35 100.0 169 ................................... TCGATGGCAAAGGCAAGAACGCCTGGGAGCATCTCACCTTTGTAACCCTTAAATCAGGTTTTTATGTCAAGCTATTTTGAAAGCCTTGCTAGAAAACAGTTTTAGGGATAAGTATAATTACTCACTTGCATAAATGAGATGCTCCCAGAACGCCTTGCTTGGAACGAAC 43423 35 100.0 40 ................................... GTTGTCAACAAGCGCGGGGTGAATGGTTGGGATACGTATC 43348 35 100.0 38 ................................... ATTTGTGGTTGGAGTGTCGGCCCATAACAGGCCGCAAG 43275 35 100.0 35 ................................... ACTCCTCAACAAGTTATTGACGCTCCTCCTCTTAT 43205 35 100.0 36 ................................... TTGATGACCTCTCTCTTTTCGCACCATCGGTATCTT 43134 35 100.0 36 ................................... TGGAGAGTTTCTCTCCACCTCAGATTACTTCTTATT 43063 35 100.0 42 ................................... AAGCGGAAGCAACAGGGATCACCTTTTTACCGCTACTAAGTT 42986 35 100.0 40 ................................... TCATTTGCCCAAATTGTCGGGCATCCTTGCGGATTAAAAC 42911 35 100.0 40 ................................... ACTGGGAAAATTGGATAAAAGTCAATCGATTAATTGTTCT 42836 35 100.0 36 ................................... AACGCAAAATTAGACTTACTTCTTGAAGAAATAGAG 42765 35 100.0 41 ................................... CTTCGGATGGGGACTGGCAAAAGCGGTGAAGGCGTTTAAAC 42689 35 100.0 42 ................................... CCGCATGTGGAGGCAGTTTTCGATACGATTAAGAATTATCGT 42612 35 100.0 38 ................................... ATTTGAGGAAATAGACGGGGTCAACTTCCTTGAGTTCC 42539 35 100.0 38 ................................... AAGAGACCTTAGTCGAGGTACTTCGAGCCTTACTTGAA 42466 35 100.0 34 ................................... ACGGGAATGCTTCATTCTTTCTCCACCTTCTCCT 42397 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================================================================================================================================================= ================== 16 35 100.0 47 GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Left flank : TCGCCCTCAAGGACGAGCTCAGCCACCAACGTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAGATGACACCCATGTAGAGGTGCTACTCAACTACTTGTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAGCAAGTTCTTAGGTGCCGAACTCGGAAGCGAAGCAGATTTCGTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAGTCGATGGCAAAGGCAAGAACGCCTTGCTTGGAACGAACGTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAGGTATCTTCGTAGCAGTATGGAACCTTTTGGAGCTAGAAAAGTTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTAATTAAACTTGCTAAGAAGTTAAAAGCAAGTTCTTAGGTGCCGAACTCGGAAGCGAAGCAGATTTC # Right flank : ACTAGCTTTGCAAAACTAGGCTGTATAAGGATTGTACAGCAATTTTTCGTGGGGTATTGAAAAGCATAGACATTATTAATAATAATTCTCAATAGTTACCTCAGTCATGAGGCTCAAAGCCTTGCTGGACAAAGCATCGACGCACCTCAACGAAAACTCTAGATTTTCAGCCATTGTGTCTAACCCGCGAAAAATGTTGAGAACCCCCCCATTCCATCGGCATGAAACAATAGAATTTGTTCTACGCTAATGCCTATGCGATCGAGAGCATCTCACCTTTATAACCCCTAAATCTTTATGTCAAGCTATTTTGAAAGCCTTGCTGGAAACCAGTTTTAGGGACAAGTATAATTACTCACTTGCATAAATGAGATGCTCCCAGCCAGAAGCCTTTGTTGGCAAGTTTTCTAGCTCGCTTGTCCGCCTGTCAGATGCTATAGTTAATCAATTATTTTGCTTAACTATCTTTGTTTTCGTGATAAAGTTTAAAGAGAGGCCTT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 44465-43846 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972669.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 44464 35 94.3 41 .C..............A.................. CTTTGAGTCTGGCTGTTGGTTCTATTTAGCGTCAATATTGG A [44459] 44387 35 100.0 42 ................................... AGAACTGGAGGACAACGATGAACGATCGTCGCGTAACAAACA 44310 35 100.0 35 ................................... TGACTGATAAGCGCAGTCATTTAACCGAATTCATC 44240 35 100.0 40 ................................... GTATCTTCGTAGCAGTATGGAACCTTTTGGAGCTAGAAAA 44165 35 100.0 33 ................................... ACCTCGCCCTCAAGGACGAGCTCAGCCACCAAC 44097 35 100.0 34 ................................... ATGACACCCATGTAGAGGTGCTACTCAACTACTT 44028 35 100.0 40 ................................... CAAGTTCTTAGGTGCCGAACTCGGAAGCGAAGCAGATTTC 43953 35 100.0 38 ................................... TCGATGGCAAAGGCAAGAACGCCTTGCTTGGAACGAAC 43880 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 9 35 99.4 38 GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Left flank : GAATGACTGAAAAAGTTACCCACTCTCAAATTTCATCTCAGATTTCTTACCGAGAAGCCATTCAATTACAAATTCGGCTGTATAAACGTAGCTTGCTGTCATCTATAGCCTATGAACCTTTCTTTCGAGCCTCCTAATGTTAGTATTAATTGTTTACGATATTCCTGACAATAAAAGACGCACTAAATTATCTAACTTTCTGGAAGGATACGGCAAAAGAGTACAGTTTTCTGTGTTTGAGTGCTTTTTATCTTTAGCGGAAATGCGAGAACTTTATGAAAAAGTCAAAAAAAAAGTTAAACCAGAAGAAGATAATGTTAGATTTTATTGGCTCTCAAAAGATGCTACCTCAAAAACTTTAACTATCGGTAGCAAACACCCTGAACCCCCTCCACAATATTATGTAATCTAGAAAAAACAAAATCTTATCTCTCACCTTTATTAGTAAAAAAATCTCCTTAGAAAATTAAAGTAGGAGATTTTTTATTCACTAATCGTTA # Right flank : GTATCTTCGTAGCAGTATGGAACCTTTTGGAGCTAGAAAAGTTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTAATTAAACTTGCTAAGAAGTTAAAAGCAAGTTCTTAGGTGCCGAACTCGGAAGCGAAGCAGATTTCGTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAGTCGATGGCAAAGGCAAGAACGCCTGGGAGCATCTCACCTTTGTAACCCTTAAATCAGGTTTTTATGTCAAGCTATTTTGAAAGCCTTGCTAGAAAACAGTTTTAGGGATAAGTATAATTACTCACTTGCATAAATGAGATGCTCCCAGAACGCCTTGCTTGGAACGAACGTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAGGTTGTCAACAAGCGCGGGGTGAATGGTTGGGATACGTATCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTAAACTTGCTAAGAAGTTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 869-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972827.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 868 37 100.0 35 ..................................... CGATCGCTTCTTTAATCTGATTGGGACTACCTGAG 796 37 100.0 34 ..................................... CTGGCTCCGGCTCTGGTTCGGGATCAACCGCCGC 725 37 100.0 36 ..................................... TCGACTATATCCAGAAGCTGTTTTAGCTAATTGAGT 652 37 100.0 37 ..................................... ATGATATTCATACCAAGACTACTGAAAGCTGATCCTA 578 37 100.0 37 ..................................... TCTTTAGGATTAAGAACCAACTCATCTTCATTAGCTA 504 37 100.0 36 ..................................... GCGACGGGGGAGAAGTCCCGATCGTTTGCGGGTGCT 431 37 100.0 35 ..................................... GGAAGTAATGCCTTTAAACAATGGGATAAAGCAGC 359 37 100.0 35 ..................................... TCCCTCTCCCCTTTCTTTTCTAGATGCCTTTGCAC 287 37 100.0 34 ..................................... AGATTGCCGCCATGGTTAATATTTACTTAATGGC 216 37 100.0 35 ..................................... AAACTAAGCGAAGAGAAGCAAATACTAGAGGAGTT 144 37 100.0 33 ..................................... TAACCCTAGACCGATTTCTAAAGTACCAAGTGA 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 100.0 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTAAACCCTATTAGGGATTGAAACTGGTTCCCACGCAGGCGATTTTTTTTGTTAATG # Right flank : CATCACTTTAAGTCTTCTAAAGTCTCGATTTCAATTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 35-507 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972829.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 35 37 100.0 34 ..................................... TTGTCGCAGGGGGATTTGTGTTCTCCGGGGACAA 106 37 100.0 35 ..................................... ATTTAATTGTCAAAGAAGGAGTAAATTATGGGATT 178 37 100.0 40 ..................................... GTTTAAGCTGAAATACAAAAAAGCCAGGACTGGCAGAAAT 255 37 100.0 35 ..................................... ATGGGACAAGGCGGCTTAAGCGTGGGACAACTCAG 327 37 100.0 35 ..................................... GAAGAACATCTTGAGCCGTGGGTTGATGAGGTTGA 399 37 100.0 35 ..................................... AAGCAAACTCAGAACTCGATTAACAAGGCCTTGAC 471 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 100.0 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : AAGGATCGTCGGTTCCTGACGCGACCGCCACAAGG # Right flank : GTGGTGATCGAGAGGCCTGCCGGTCGAACTTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 73-1113 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972855.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 73 37 100.0 34 ..................................... TCCACATGGCTCACTTTTAAGCTAAACGGCGCTT 144 37 100.0 36 ..................................... TTTTTAATTTGTCGATGGCGCGGGCCATCGCCTGAG 217 37 100.0 34 ..................................... TCAATTCCTAATAGGCATTACTTGTACCGATAAA 288 37 100.0 35 ..................................... GACTACGGACGAATTGAACGAAATTCCTTACTAGA 360 37 100.0 36 ..................................... TCATTCACCTCTATATAATACCATGAAAAATCAAAA 433 37 100.0 36 ..................................... ATTTATCAATTTTTCTATTACTATTAGGAGCAAATC 506 37 100.0 35 ..................................... ATCTCATGCAGTGGCGATAATGCCTATGAGCGATT 578 37 100.0 35 ..................................... CAGAACCCACTCCCAGAGCGGTTTACAACGGTGAC 650 37 100.0 34 ..................................... GATTTAAGTGTCATGGCAGTAACTCGTTAACAGG 721 37 100.0 34 ..................................... TCAAACAATCTGTAGAGGATGGTACTGATGGTAA 792 37 100.0 34 ..................................... GATTTAAGTGTCATGGCAGTAACTCGTTAACAGG 863 37 100.0 34 ..................................... TCTTTAAACATGATAGCGTGTTTTGGGAAACACT 934 37 100.0 34 ..................................... TATATCTTCTACAGTAACCCGTTAACAAGATATT 1005 37 100.0 35 ..................................... ACAGGAGTAATGATTAAATCCGCACTTTCAATTGT 1077 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 15 37 100.0 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : AAATTCTCACCAATGCCCTATTAGGGATTGAAACCAGTTCATTGAAAAAGTAAAAAATACCATCAATTACTTG # Right flank : GATAACCAGAGACTATATGCTCGCGAAGAATATTAGAGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 11-852 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972860.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 11 37 100.0 37 ..................................... TATCACAGACTAGGGCTACTCTTGTCAAGGCTATACC 85 37 100.0 34 ..................................... ATACTACCAGATTGAAAATACACTCCTAAATATA 156 37 100.0 34 ..................................... CTACTTTAATCTCAGTTAGCTTGACTAAGTTAGC 227 37 100.0 35 ..................................... AAAGAAGTGTCACACTTGACCAACATCTATCAGAA 299 37 100.0 35 ..................................... AATTCCTTTTTAGATAAATCCCAATTAACAGTAGA 371 37 100.0 34 ..................................... GGAGACTATACTATTAATATACACTAACTAACCA 442 37 100.0 35 ..................................... AACTGGATCGAAGAACACAAAGTAACTCTTGAGAC 514 37 100.0 35 ..................................... TTTTTAATTTCTTCCCAAAGGTTTTATTGACTCCA 586 37 100.0 36 ..................................... CATTTTAATCCCTAAATAAGTAGATGTAATATTATA 659 37 100.0 45 ..................................... TTAACGCGACCAGCATTTTCCAGAATCAAGCGAAGCGTTCCAATT 741 37 100.0 38 ..................................... TGTGATGATGATGCGAACGAACTTGGGGACGCTTTAGC 816 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 12 37 100.0 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TTGCTAGATAG # Right flank : CTCTTTTTTGCCCCCTCAGATTGATGAAAACTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 34-516 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972865.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 34 37 100.0 38 ..................................... GCGGTTGGCCTTGGGTTGACCCGTTAAAAGAGGTAAAT 109 37 100.0 36 ..................................... TGGCAGACGGCGATCTGTAATTACTGCTCCTTTTGG 182 37 100.0 37 ..................................... GCAATTAAATGGCGTGGAAATTAACCCTAGAATAATG 256 37 100.0 35 ..................................... TAAAGGCCGAAGCTATTTCACTTCAAAAGGTGGCA 328 37 100.0 41 ..................................... AATGGATTTGTAGCCAAATTATTAGCTTAGTATTGTGAAAG 406 37 100.0 37 ..................................... GAAACTCAAACTCAGGGAAAAGGGCCGCGCAACTCTA 480 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 100.0 38 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TTCAATACTCGGCTTTTTACTCCATCTCGCTTGG # Right flank : TTACCCCGATAATTGACATCAACCCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 60-1902 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972883.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 60 37 100.0 33 ..................................... GAGAAATTTGGTAAATTCTGATTGAAAAAGTAG 130 37 100.0 35 ..................................... TCGAGTGCGATCGAGATTACGCCTACTCCCTATGC 202 37 100.0 35 ..................................... GATGTTCCTTTTCTACCCACTCCCTCAAATCCTGC 274 37 100.0 35 ..................................... CGGAGCTTGATGCGTGAAGACTGGATTGAACTGAT 346 37 100.0 35 ..................................... TGTTTTTTCCGCAATTTTCCGGACTAATTCCGCTT 418 37 100.0 34 ..................................... TCGATTCCCGCCAACTCTGGGAATAGTGGCACTG 489 37 100.0 35 ..................................... CCCATTACTTACTATCAAGATGTTAATCCCAGCTA 561 37 100.0 38 ..................................... AGACCACTCGATAAAGTAATCGAAGTGGCATCAACCGC 636 37 100.0 34 ..................................... ATCTGATATCTGGGCATCTGCAACAAGGGCAGAT 707 37 100.0 33 ..................................... ACTATTCCAGCCCTAAGCCCACTTTTAAGCCCA 777 37 100.0 34 ..................................... GTCGTTGCCATATAAAACTGCCTCTTATCTTGAT 848 37 100.0 37 ..................................... TTATTGCTTCTTTGGGCAAATGCCAACGATGATGCAG 922 37 100.0 36 ..................................... ATCGGATGATGAATTAAATGCAATCCCTTACTAGAG 995 37 100.0 37 ..................................... ATCGAAAGTTCCCCCAGCTAATTATCGAAAAGTAAAG 1069 37 100.0 42 ..................................... GTAACCCGCTCTGTATAAGGGGTGTGGCTTACAACGGTATAA 1148 37 100.0 34 ..................................... TTAACTGGGAAAACCAAGCAAGCATATCACTGCG 1219 37 100.0 37 ..................................... CGGCCCGATTGCTTAAATGCTGCCACTCAATCCCCTC 1293 37 100.0 35 ..................................... CGAGAAAATTCTATAGTAAAAATGGCAATTAACGG 1365 37 100.0 35 ..................................... CTTATAACCATTGGCTACAAATTTGTAGCATTCCG 1437 37 97.3 34 .......................T............. CTCACTATAGGCTAGGATTGGCTTCCGGGTAGTG 1508 37 97.3 34 .......................T............. TTTTTGTGAGTTGACTGGACAAAAGTGCTAAATT 1579 37 97.3 35 .......................T............. TTTTTGTGAGTTGACTGGACAAAAGTGCTAAATTG 1651 37 97.3 36 .......................T............. AAAAAATCTGCTCGTTTTTTCTTATTCCACTGCAAG 1724 37 97.3 34 .......................T............. TTACTAAAATCTTTTTGGTGCGATTGATTTTTTC 1795 37 97.3 34 .......................T............. GTCGAAAATCCCCCCAGCTAATTATCGAAAAGTA 1866 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.3 35 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : AACTTCTCACCAATGGATTGAAACAGGCGTTGCCGGTTGTTTCGGAGTGGTAAGCATTGG # Right flank : TTAGCCATTTTTAGGTCTGTGCCATGAATGCACTGTTCCAATTAATCTTAAACCCTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 9367-9705 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972689.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 9367 36 100.0 36 .................................... AAAATCCTGCTCTACCCAGCTTTGTGTCCCATTATC 9439 36 100.0 40 .................................... GTCGGTCTGGCGTGAATAATGCAGGAAATTGCTGGTAGAT 9515 36 100.0 42 .................................... TAAAAAAGTAGGGCTAATTCCGGAATTAGCCCTACTCTTCTT 9593 35 91.7 41 ...............G.......-.A.......... ACTTTGATAACAGCAGTCTTAGAGATTTTATAATCCGCTCT G [9620] 9670 35 94.4 0 .......................-.A.......... | G [9697] ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 97.2 40 CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Left flank : TCGCAATCACTAAAATATCGGTCAGCAAATGTTTTTGAGTTCGAGAAACTCTCGGGTCAGGAATATCTTGAACATAATTCAATAACCTGGCTTGAATTTCATTGATTGGTGTTAACGGCCCGGTCGTTGGCTGTTGAGCTTTCTTTTCTGGTTCCAATACGGGGGCAAAACCTGTTGCCATGACTTCTCTCCTAATTAATATTAATTGGGCTCTTCGTTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAATTTATGAGTTGAAATCGATTTTTCATGGACAGAGTTCTTAAAACCTGTCTATCTCCAGCGTTGGATGATAATTATCTATCAAAAAATAATGCTTCTACACAAGTTCTCTATTTAAATAAGAGAATTTTATCTGATTTTTTTCAAAATGAGAATTGCTGTTGGAACACCAGTGA # Right flank : CCTTCTCATAAGAAACAGGAGAAGCAGGGATTGAAGCGATTTTTTTTATCCGTTAATTTCCCCTATCAATCCGTTAGGATTACTAGGCAATTAACTAACAAGAAAAAGTCATGGCAGTCTTAGAAATGCTCACCGTTCCCTTTTGCTCTCCCCTTGCTGGCAGCCTTGGCGAATAGATAATTAAAATAACTCAAATAGGACTGCCCTAGCAGTTCTTTCTAGGTAAAGCGGCAATTTTTAATCAATTGTTAAAATATTAAAAGGATGCTAAAGATGGCGGCTAGGGTTTCCAGAGTGAGCTATCCTAGAGATACTACTTACTCCATCCTCCCCCATGCTCGATCGAGTTCTCCATAGTCGTTATCAAGTCCAACAGTTACTGGGAAAAAAAACTATCTTAGCTAGGGACAGACACACCACCCAGTTAGTTATCATTAAACTTATTTCTGTTCCTAGGGGGCAAGGGAGTCAGTTTATCGGAGAAATAACTGGTAAAATTG # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 214698-214370 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972732.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 214697 37 100.0 34 ..................................... GCCTCGTTCTAAATCGCTTATTGCCGCTTTACTT 214626 37 100.0 35 ..................................... CTCGCTAATTCCCCTAAACTTTCATCGATTACCTC 214554 37 100.0 38 ..................................... GGGGACACCCCCACCCCCCCCATTAAATAGCCCCCCAA 214479 37 100.0 36 ..................................... CATCATTTGAAGAATTTAAATCTACAATCAAAGAAA 214406 37 94.6 0 ...................................GT | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCTTCTCCTCTTTTGTGGGGAATCTTGCCGCTAA # Right flank : GAAGGGAATTTCTGAAATGGAATTCAGTCTGTCTATATTTGACTATACTTTTACTAACTAGGGCTTGCTGAATAATGGTAAAACCCTTTTAAAATAAGGCTTTTGACCTGTTAAAATCCGATGTTCATGCTGCGAAAATCGGATTGGGACCCTCAAAAACCTTGCATTATCCTTCTTGTAGTATATAAGTTGGTACGAAAAAAGAGGGCAACAAAGCCTGAAACGACCGACTACTGACGACCGACGACCGGCTACTGACTCCTAACCCCACCAACAAACTTTTTGCCGCAAACCCTATCTAAAAATCAAACTCGTCTAACCCCGGTTGTGGGGGAGGAAAGCGACTGCGAGGAGATTTTTTCGACTTTCTCAAAAAAGCGGGGATAAATGCGGCCATAAAAAATCCAATTCCCAAAGAAAAAGCCAATAAAACACCGATAGGTACTTTAATTGACTCAAATTGTAGAAACTTTAAAGAAACTGGTTGGATATTTTGAATA # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 28137-34128 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972745.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 28137 37 100.0 34 ..................................... ACTAATGAAACCGTGCGATGCCCAAGCGTTAAAG 28208 37 100.0 35 ..................................... GAGACGCAGGAGGGAACTGGATATCTCGCTACAAC 28280 37 100.0 34 ..................................... AAAAATTAATGTTTGTACCTAATGCTTAAATATC 28351 37 100.0 35 ..................................... TAGAGAAACTAAGGACATATCCTCAAAATTGGCTT 28423 37 100.0 37 ..................................... TTTTTAGTTTTGAAAGGATGAGCGTATTTCCCCCCGT 28497 37 100.0 40 ..................................... CATGATTATCTCCTATTAGATTGTCGTGGTACAGGTGAAC 28574 37 100.0 35 ..................................... GGCGTAAATTTTACTATCACCAAACATCTGCAACT 28646 37 100.0 40 ..................................... CACTACTTAGTAATGACAGTAATGACAGATAGTGACAAGA 28723 37 100.0 35 ..................................... GATAAGGTGGTAGGGAACAAATCAAAGTATCTACC 28795 37 100.0 34 ..................................... TATTTTGGAACTAAAAATAAAATCAATACTAAAG 28866 37 100.0 35 ..................................... ACTGGCAACGATTATTTAAAGACTAATCATTAGTT 28938 37 100.0 37 ..................................... CTATCGAATCCTGAATTATTGAGATTAAAAGCGCAAT 29012 37 100.0 35 ..................................... TTTTCCCCAGCAATCACCGGGGGGAATATAATGAT 29084 37 100.0 35 ..................................... TTTTCCCCAGCAATCACCGGGGGGAATATAATGAT 29156 37 100.0 34 ..................................... GCCGACATCTTTTTTCTCCCTGCGATTATTAACT 29227 37 100.0 35 ..................................... TCTCCCGGCACCCAAAGAGAAGCTATCTTTGCCTC 29299 37 100.0 35 ..................................... GGGTGAGTCTGCTGGACGAAAACTATTAACAACAG 29371 37 100.0 36 ..................................... GAATCCGATCCAGACCCAGAACCAGAGCCAGAACCG 29444 37 100.0 40 ..................................... AGGAGAAATGCTCGAAATTCTGACTGCAATAATTGCTCAC 29521 37 100.0 34 ..................................... AGCAGAAGCAATTCTGATAAATTCCCCGAAACTA 29592 37 100.0 35 ..................................... GTATTTCAACAAAACAAAAGCTCAACAAGCAAAAG 29664 37 100.0 33 ..................................... CATCATTTTTTAAAAAGGTACTGGGTAAACGAT 29734 37 100.0 34 ..................................... CAGCATCTTTGATTGTTTTCTGGTTAACATCATC 29805 37 100.0 35 ..................................... GATCACGGATGTGGTGGCACAACAGGGCTTAGATG 29877 37 100.0 35 ..................................... TTCACAATAGTTAAGAAAAGTTTTGATTTGATAAA 29949 37 100.0 34 ..................................... AGTTTTAATAATGTCCCCGCTCAAAGTTTTACCG 30020 37 100.0 37 ..................................... TCTAGAAGGCAGAAATCGATCGCTTATTGGCTCTGAG 30094 37 100.0 35 ..................................... GTCGAACTCATCCATTGAAACTTGAGAGGGAAATT 30166 37 100.0 34 ..................................... GAGGATATTAAAAAAAATAATCAAAATACAAATG 30237 37 100.0 34 ..................................... TTTCTGCGATTTTTTTGACTTCTGCCAAAAGAAT 30308 37 100.0 34 ..................................... TCAGGCTTGTGAGCCAGGTACTGGAAGAAAGCTT 30379 37 100.0 38 ..................................... CCCCCGGTTGCAAGACAATCGCTTCCCCAGAATCTAAA 30454 37 100.0 36 ..................................... GGCTTTAAAGTTCCTTTATGAATCCCACCTCTAGGC 30527 37 100.0 34 ..................................... AACTATCTATAGATTAGATTATCTTATCTATAGA 30598 37 100.0 34 ..................................... GACGGTGCATCATCAAGATTGCGATCCTTCTAAT 30669 37 100.0 37 ..................................... TTCCTTTGCCTACTCTCGCAGGGTGATTTTTTCGCTC 30743 37 100.0 34 ..................................... AGCCGATAATCTAATCTAATCCATTGACAATAGA 30814 37 100.0 38 ..................................... CCTTTGCTAAGACAGACTCCCGGCGCTCGCTAATTTAG 30889 37 100.0 38 ..................................... ATTGCCGCGGCAATTTTCGGATCATTGCACAAGGCCTT 30964 37 100.0 37 ..................................... TCCATCAAAAATGATTTGTCGCTAATTTCTCAGCGAG 31038 37 100.0 35 ..................................... TAGATGGTCGTGGTGATCTGATAGGCCACTAGGCT 31110 37 100.0 35 ..................................... AGCGCATAAGTAGTATTAATAATATGAGGGTAAGG 31182 37 100.0 36 ..................................... CATTCAATCAAAGCCTCTTTTAAGCATTTTTCAGTT 31255 37 100.0 40 ..................................... ACTTCGCTTTTAATCACATAAATTCTAAGATCAAGTTCCA 31332 37 100.0 35 ..................................... ATTGAGAAAAGTATCCCGATTGGTGCTGCCCACGA 31404 37 100.0 36 ..................................... GACTTGTAACAGGCTGGTTCGCCTTGCAGCACAAAG 31477 37 100.0 35 ..................................... GGGGACATGAAAGCTAGGCGACTATTCCCTAGCAA 31549 37 100.0 36 ..................................... TGATAAACTGCAACGTTTGGATTTTCTTCTAATACC 31622 37 100.0 42 ..................................... TGTGATCCTTTTGTGCTTGAAAATTTATTAAGGTAGTGCCAG 31701 37 100.0 34 ..................................... ACCCAGAACCCGGTCCCAGAGCGGATTACAACGG 31772 37 100.0 36 ..................................... TTAAAATCGTTTCCTCCGGCAATATTAGATATTTCG 31845 37 100.0 37 ..................................... CCGCCGAATTTTTTAGGAGCCAATACTCAAGCCGGGC 31919 37 100.0 37 ..................................... GTATGGCAAAGACTGTCGTAACGCCTATAAAGATGTT 31993 37 100.0 35 ..................................... ACATCAATAGAAGATAGTCACAAATCCCTCTAGCG 32065 37 100.0 41 ..................................... CATTTACTTTTTAATGAAGCCACCCCATAATTTAATCAATG 32143 37 100.0 35 ..................................... GTAAGCCTCACTGTATAAGGGGTGTGGCTTACAAC 32215 37 100.0 36 ..................................... TAATTCAGTAACACTGATAACTAATAACTAATAACC 32288 37 100.0 38 ..................................... AAAACTGAATTTAAATTAGTTTGAATATTTGCAAGCAC 32363 37 100.0 35 ..................................... TTCAAATCATTTCCTCCAGCAATATTAGATATTTC 32435 37 100.0 35 ..................................... AATGCGATCCTCAAGAGATTCGATGTGTACTCCAA 32507 37 100.0 39 ..................................... CTAGTAATCACTTTATTTAAAGCCTCGAAACAAGCTAAT 32583 37 100.0 35 ..................................... ACAAATCTCTCTAGCCCGATTCCGATTAGCCTCCT 32655 37 100.0 34 ..................................... AAATTGGTTATTAGTTATCAGTGTTACTGAATTA 32726 37 100.0 32 ..................................... TGTTTACAGTCAGTCACGAAGAATTTCTAAAA 32795 37 100.0 35 ..................................... TTTTCCGGAATATCATTGCAGCAGTATCCATTATA 32867 37 100.0 34 ..................................... CTGCAAAAGCCAAAGATTTATCACGAGAATTGAT 32938 37 100.0 34 ..................................... TTACGCTCCCCCGCTAATAAAGCCTCCCCTTCCC 33009 37 100.0 38 ..................................... GTAAATTTCCCCTTTTACGGGATCAGCGTAGTGCAATC 33084 37 100.0 37 ..................................... ACGGATGCTGCTGGGGGAATTCGGCAGACGATTACGG 33158 37 100.0 34 ..................................... TTTGTTTTTGCCGCGACTGCCAAAAGCGAGGATT 33229 37 100.0 34 ..................................... AATCTTTTTATACCAATAAGTAAAAGGGTATCTA 33300 37 100.0 34 ..................................... GACCCTTTACAAATGACTGGGCGGGCAAACTATC 33371 37 100.0 35 ..................................... GTGATGCTCTTTTGTGAGGGGGATTCCTTCAAATT 33443 37 100.0 34 ..................................... TCCCATCCCTTCCATTTTGCCCAGGATCTCCTTT 33514 37 100.0 34 ..................................... TTCGATTTCACAGAGGGTACGGGCGGCGGCAATG 33585 37 100.0 34 ..................................... AGACCCACCCGACGCGACTTCTCACACACCTTCA 33656 37 100.0 41 ..................................... GTTTGCTGTAACAGCAATCGCAAAACCGACGGGTTTGCACC 33734 37 100.0 35 ..................................... ATGAAGTGAGCGATATTAAACCCCAATCCCCATAG 33806 37 100.0 35 ..................................... AGCGGATCATTTCGGCTTCTCCCCATTGCTGGAAT 33878 37 100.0 34 ..................................... GCGCCAAAGAAGTATCATGCCGAGGATGTTGACT 33949 37 100.0 35 ..................................... TTTTTTGAGCAAGATAAAGAGGATGTTTCTGATAT 34021 37 100.0 34 ..................................... CCTTTCCAAACGAGGACTTATATCCAGCAATTAG 34092 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 83 37 100.0 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TTTGTTGTCAGTTACGATATTTCCGACGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCTAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGCATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCTTCCGGGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGTTCTTGAAGAAGTGGGTCACTTGCTGTACAATGGGTTTATTGCGGGTGCGGCGCAACGGAACCTTGAAAATCCCATAGCGTACGGCTTTTACCACTGGGCG # Right flank : CTGGCATTTCGTAAAGATTTGTACTGTGGCACTTAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATGATGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCATGTTCGTTGGCACCCTGAGAATCCTAATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAACTGTGACCCATTTGAGCGGCGGCTAAACTAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTTCCATCTTTCCCAGGATCTCCTTTAAGCCCTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGTGATGGCTGGATCGATCAATCCCTCCGCTTTCCTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCAGATTCTGAATTAATAGCCTGATCCACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 2 34344-36251 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE972745.1 Microcystis aeruginosa PCC 9717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 34344 37 97.3 34 .......................T............. AAACTGTGACCCATTTGAGCGGCGGCTAAACTAA 34415 37 97.3 35 .......................T............. TTTTCCATCTTTCCCAGGATCTCCTTTAAGCCCTG 34487 37 97.3 36 .......................T............. CGTGATGGCTGGATCGATCAATCCCTCCGCTTTCCT 34560 37 97.3 33 .......................T............. GCAGATTCTGAATTAATAGCCTGATCCACATCT 34630 37 100.0 34 ..................................... CAGTTAGCCTGAGATATGTAATTGATGGTAAAAT 34701 37 100.0 34 ..................................... TTGGGAAACACTACACTATCTACTGGAATCCTTA 34772 37 100.0 34 ..................................... AAAGGAGGCTAATCGGAGTCGATCAGGCTAGAGA 34843 37 100.0 39 ..................................... TCGGAGTTCGATCGTTACTCCAATTTTTGCGGCCTTAAG 34919 37 100.0 34 ..................................... TAGGTCTGTTTGCTCCTCGATCTCAGCATTGATT 34990 37 100.0 34 ..................................... TAAATATCCCCCCCAACGCTATCGATCTGGTCTT 35061 37 100.0 34 ..................................... TCAAGCCTGATCGCCCGAAGCTTAATCGAGGCAA 35132 37 100.0 34 ..................................... ATCGCCACTGCATGACATCACATTAGAGGAAATT 35203 37 100.0 34 ..................................... CGCGCATCATATAAATCCTCGATTACCGCACTAG 35274 37 100.0 35 ..................................... ATAGAATAAGATATTTTAATCGCTACTTTTCTATC 35346 37 100.0 36 ..................................... TTGAATCGGAAGGAATTCATCGCCATTCGCACCCTA 35419 37 100.0 39 ..................................... GTATAAACTTTAGGAGATATCGGATCAGTACAAGGCCGG 35495 37 100.0 32 ..................................... GTCGAGCGTTGTCACCGTTGTAAACCGCTCTG 35564 37 100.0 36 ..................................... TATTCATTGACTAGCCAGTTGCTATTCTATGAATAG 35637 37 100.0 35 ..................................... AAAAAAATCGAGCTATATCAAAGAATTGGCCGATC 35709 37 100.0 33 ..................................... ATCAGGGACTTTGCCGATTCCAAATTCGACCCA 35779 37 100.0 35 ..................................... AGGCTTTCATGGTAATATTCGATCCATCTAAAGAA 35851 37 100.0 33 ..................................... CTAAGTTAGTCCGCTCGGATTTATCAAGCCCAT 35921 37 100.0 35 ..................................... TTATATTGAATTTGTATCCAATAGTTACAAGCAAT 35993 37 100.0 43 ..................................... AGGATAAGGAGTAGATTGGGAAGGCTTTGCAGGCTTTTCTAAT 36073 37 100.0 34 ..................................... GTTTGCCTCTCGATACTATTAGCTTAATTGCTTT 36144 37 100.0 34 ..................................... GCCTTTCTAACATTAACCACTTTTCCAGTAAAAA 36215 37 97.3 0 ....................................N | ========== ====== ====== ====== ===================================== =========================================== ================== 27 37 99.5 35 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : GCGGATCATTTCGGCTTCTCCCCATTGCTGGAATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCGCCAAAGAAGTATCATGCCGAGGATGTTGACTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTTTTGAGCAAGATAAAGAGGATGTTTCTGATATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCTTTCCAAACGAGGACTTATATCCAGCAATTAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTGGCATTTCGTAAAGATTTGTACTGTGGCACTTAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATGATGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCATGTTCGTTGGCACCCTGAGAATCCTAAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //