Array 1 212119-210380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAY010000004.1 Salmonella enterica subsp. enterica serovar Derby strain YC19BS1 YZU2065_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212118 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 212057 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 211995 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 211934 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 211873 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 211812 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 211751 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 211690 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 211629 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 211568 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 211507 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 211446 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 211385 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 211324 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 211263 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 211202 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 211141 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 211080 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 211019 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 210958 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 210897 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 210836 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 210775 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 210714 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 210653 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 210592 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 210531 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 210470 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 210409 29 93.1 0 A...........T................ | A [210382] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229580-228759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAY010000004.1 Salmonella enterica subsp. enterica serovar Derby strain YC19BS1 YZU2065_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229579 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 229518 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 229457 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 229396 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 229335 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 229274 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 229213 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 229152 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 229091 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 229030 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 228969 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 228908 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 228847 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 228786 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //