Array 1 94428-93784 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT934425.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 94427 37 100.0 42 ..................................... GCTATGTTGCCGGGTGCTTTAGCTACTATCGCAGGTGCTTTT 94348 37 100.0 38 ..................................... GGTAAATACCTCGTTAACGCCGTCTAACATATTAATAC 94273 37 100.0 38 ..................................... AAAAAAGTATCCGTGCGCGCGCACGATACAACTAAACG 94198 37 100.0 38 ..................................... AGTGTCTTTTGCCCTCCGACCAGCACCTCCAGTTTGCC 94123 37 100.0 37 ..................................... GTCGCAGTCCTTGTTACTAAGCCACGCGTCATTCCAC 94049 37 100.0 41 ..................................... AACCTTGATTGAGAATGCTTGATGAGGAGCATACCCATTTT 93971 37 100.0 41 ..................................... GGTCATTGTTACCGGGAATAGCTCATCGCCGACACAATTGC 93893 37 100.0 36 ..................................... TCCAAAGAGCAGCTCCTTATGTACTTGATTTTGTCG 93820 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 100.0 39 GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Left flank : TGTAATGGAGATATAACCAATGTTTTATTTGGTTTCCTATGATATTCCGGAAACAAGAAGAAGGACAAAGCTCGCAAAAATCCTGGAAGACTTTGGCGACCGGGTGCAGTATAGTGTATTTGAATGTATTTTGGATGAGAAGCTTTTAGGCAAAATGATAAAAAGAATACAGGAGATTATAATCGCAGAAGACGACAGTATCCGTATTTATTCTATTTGTGCCGGGTGTGAAAAAAGGATAGAAGTAATGGGAAAGGGAAAGGTCTCAAAGATTGAAAATATATACGTAATTTAAAGTGTGATAAGCATTTAGCGGATTTTTAAAACATAGCTAAAAAGGGGGTGGTTACAGGAAAATCATAATCGATTGTGTTTTAAGAGGTTAAGACAATTTTTTAATGGAAAGGATGAAAATTTCGATGTGTAATGATTACAGATTGTGGAGGTTACAGGAAATGGCCTTGCAAGTAGTTGTTAATTCTAAAGTTACATATGCCGCT # Right flank : GCTTCAATTAAAAGGGCGAGGGTCACACCTTGATTGGTGATTAATTTGTTGATAATAAAAGGCAATTTTTATATCTTGGCTGCCATGACAAGGCCATGGCGCATAGAATTTGAAGGGGACTTACTATCACATCTTATCACGGGGAAATGAGCGAAGGAATATTTTCCATGACAATGACGATCGTATTTCGTTTCTCGATATTTTGGGAAACATATAGGAACGGTTTGAGGTTGAAGTATATGCCTATGTTCTCATGGATAACCATTATCATTTACTCCTCAAAACCAATAAACCCAATATTTTTCAATGTATGCAATGGTTTGGAACTACGTACACGCACCGGTATAATTTAAAACACAAGCGAATTTGGCACCTTTTCCAGGGACGATTCAAAACCTTTCTTGTTGAAAAGGATGAATACCAGATGTGTCTTTCCCGCTATATACACAGGAATCCTTTACGAGCCAAAATAGTCAGGCGGTTGGCAGATTATCCGTGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 109915-109131 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT934425.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 109914 37 100.0 38 ..................................... TTATCATCAAGACATTCTGGCGCTTCATATGAATCTGG 109839 37 100.0 37 ..................................... GAAAACGGATTGGAGAACCCACTGTCATCAATTTCAG 109765 37 100.0 37 ..................................... GCTCATCGCCGTACCAGTAGGTATGGTCGCTTTCCCG 109691 37 100.0 39 ..................................... GTGGTATGAAAAAGGCATGTGTGGCGCCGGATTAGGAAC 109615 37 100.0 35 ..................................... TTGGAGAACGGAAAGTCATCGCCAGTGCTATTGAC 109543 37 100.0 36 ..................................... GATACATACTTTTGCATCAGGAAAATCTTCTTTTTG 109470 37 100.0 34 ..................................... AAAGGTAAAGACGTCTCCCCCGTTATTGCATTGG 109399 37 100.0 38 ..................................... AGCAAAAACACATTCCACACAACATATAGCACACCATC 109324 37 100.0 42 ..................................... AAACAGAAACAAAGTCTGCGTCAAAAGCAGATAAAATTTCTT 109245 37 100.0 42 ..................................... AGAACTAAAAAGCAAATTATCAGGGTTAGTTTCTGTTTGTGC 109166 36 86.5 0 ....G...T......................A-..C. | ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 98.8 38 GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Left flank : ACTCTGATCTTCACTGGTATGACTGGAATCGGTATTCTACGCGGCAGGAGCAGTGGATGTCCCTTGGTGGTGTTTTGGGAACTGTTACCTATGAAGGTAATAACTCCGAATTTATACCCTTTCTCAAATTAGGGGAATTTATCCATATCGGAAAAGGGACGTCATTCGGTCTTGGGAGATATGAAATAATGAAGTCTTCAAATAAGTAAAAAAGCAAAATAAGGAGGTGAATAAGGCGTTTTTCCCTTGTTGCCAGAAAAAAGAGAGAAAGTCCTAAATCCGTGCATAACAGACTATGTTTTAAAGAGTTAACGGATTTTAGAAACATAGTTAAAAAAGGGGGTGGTTACAGGAAAATCATAATCAATTGTGTTTTAACAGGTTAAGAGAATTTTTTAAGAAAAAGGATAAAAATCTCGATGTGTAATGATTACAGATTGTGGAGGTTACAGGAAATGGCCTTGCAAGTAGTTGTTAATTCTAAAGTTACATATGCCGGC # Right flank : ACCAATGGCGGAGTTGAAAGATGAATGTTGCAAGTTTAAAGGAAATAACGAAAAAGCATGAAAGATTTCGGGGAACTGAAAGTATGGCAAACGGGCATGAATTTATTTGATGAAGTGATAAGGGACATAGAAAAATTCCCAAAAACAGAGGTTGGCAAGATAATAGCAAATCAAATAATACGAAGTGTTTTTTCAATTACCGCTAATATTACAGAGAGATATGGAAGAAGGAAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTAAGAGTTTGTACATTATTTATATATTTCAAGAGGGTCTGCAAATGGAACAATTGATTGGTATGAAAAACTAAAAAGATCTGGGTTCATAGATTCAATGGTATTTGTGAAACGGGAACAAACATGCCAGGAGATACGGGCTATGTTGAGTAAGATGATTAGTACATGGGAGAAAGAATGACTTTTTACTTTTGACTTTCACTCCAGCTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATCATTGACCTGATGTAGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 490525-489976 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT934425.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 490524 29 100.0 35 ............................. TGTTGAGCGTGCAATAGACAAGGCATTTGACATGC 490460 29 100.0 36 ............................. GTTACAATGCCGATATCACGCCTTGCACCATTACCA 490395 29 100.0 36 ............................. GGGTGCAAGAAGTGCAATAATATTGGTTTTAAAGGC 490330 29 100.0 36 ............................. AGTAGTGGAATTAATGAAAAGCCTTGCTTCTGTACA 490265 29 100.0 37 ............................. AGTATTTGGTCGGGAAGTTTTTTCTTAAGATTACCCA 490199 29 100.0 35 ............................. TAAAGATATACAACAGGGATTATGAGGCGTTAGCT 490135 29 100.0 36 ............................. CTATCACGGGCAATTCTAAATTGTTCATCGACGCTT 490070 29 100.0 37 ............................. AGCTACAAGTCGCCTGCGTGAAAAAGACTTAAGTGAC 490004 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 100.0 36 GTCTCATTGCACCTATAAGGAATTGAAAC # Left flank : GAATGCGCCAAAGACTTCCTGTTTTCCCAGGTTCCTTTACTGTTGTTGCATCAAATAAGCGAAGATGAAAATTATTCCGTTTATTAATTTGGAGGCCACGCTCACGGAATAAAGATAAACATAATTTATATAGCCATTCTTTGCTCTTTTTTAATCGCTTTAATAAGGCAACATCGGATAAATCTGCTAAGTTAGCACGCTTGGCTCGAACTACTGTTTCACGCAATGAATAGCCACATCCTAAATGAATTAATAATGTTCGAAGAAGCTTTTCTTCAGATTTATCCTTGCGCAAGCCTTTTAAAGCATTTGTATCAACGGCTAAACTTTTCCAATCGTTTGGGAAGAAAGTTCTTAGAAGATCCCAATCTTCTCTCATCATGGCTTTATCCTCCTATAGAGTGATTAGCGGGATAATTAACATAAAAATACCATGATGAATAAAATTTGTCAATAAAACAAGTTAGCGCTTATGGGGCGTGACCCACCCACCACGGTGG # Right flank : TAACATCAATACAGTAATCTAAACGAGAAATATTCCCGTCTCATTATTGAAACATGGATGTCAAGAATAAGGGAAAAAACTAATGTCGCGTCTCATTGAACCAGTTGTTTAAGATGTCTATTTTCTCAACTTGACGGTGCCGCTATGTCTATAAACGTAATAATGGCAACGGCTGTAGTGCGCCAGAGTTCCTGTCCTGTGTTTTAATAATACCATTTATAGCCGTTGCCAACATTTTTTCCCCCTTTTTGTTGAAGGGTATGGTGCGGTAAAATGCAAAATTGTGTATTATGCATATGGTATTGTTTTATTTTCGTTTCAAACCAAAAGTTCATCACAAACAAAGCGAAACTGAATTATCAAAAGAGGCAAAAACGAGAATGCCTTGAAAAGCCTGAATGCGCTGTTAGAATAAAGATGTTTCGTAAGTATTTAAAAAATCTTAAGACACATTAAAAACCTTGAAAATAAATACGCACTATTTACAAATAATTGCCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATTGCACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 4 493064-491955 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT934425.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 493063 29 100.0 33 ............................. GAGGGTCGCTTGTATCGTCTATATGCGAATCAA 493001 29 100.0 36 ............................. AATCTCGGAAGGGCGTGAAAAGAAATTCCCAAACAC 492936 29 100.0 36 ............................. ACGATCAACCAACGACTAACCACAAACAATAATAAT 492871 29 100.0 35 ............................. TTGAAAACATGGCCATGTCGATACTGGATTCTATT 492807 29 100.0 35 ............................. GCCGCATCAGCCGCAATGTACTATCTCACCCGCAA 492743 29 100.0 33 ............................. GAGGGTCGCTTGTATCGTCTATATGCGAATCAA 492681 29 100.0 37 ............................. AGCGTTGTCATGCCGCGCCAGGCACGACTCGCCTGCG 492615 29 100.0 35 ............................. GATAATTTGATTTTTAGTTCTGAGTATAATTATTT 492551 29 100.0 37 ............................. TCAGCAATAAGGATTTTACTTGCCGCAGGCGTGGCGG 492485 29 100.0 38 ............................. CAGGATTTCGGAGGCATGTACGGAGCCGAGGAAACCGA 492418 29 100.0 35 ............................. CAATAAGATATGACCCCTCATCTACCACCTTCAGC 492354 29 100.0 35 ............................. TATCTATAATCCTACAACAAAACTATGTAGGCAGA 492290 29 100.0 35 ............................. ATTATCACTGAGCTTATCAGGCCGAAAAACGAAAA 492226 29 100.0 37 ............................. CGTCAGAGAGGCAGTACAGCACTGCCTCGTCGATAAA 492160 29 100.0 35 ............................. TTCGCATCCACTACATTAGATGAAAATATTGATGA 492096 29 100.0 84 ............................. TCGGTATTGTGTTCTACAATTGGAGAGGGAAGGAACGTCTCATTGCACCTATCCCGGAAAACGGGGAAAGATACGACGGTAATT 491983 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================================================================== ================== 17 29 100.0 39 GTCTCATTGCACCTATAAGGAATTGAAAC # Left flank : CATCACGATTGGGATACCGCGGACATTATAAAAGCCTACTATGGGCAATCAAAAATTGAACATGCCTTTAGAAATCTCAAGAACCCCTATCACCTTGCTTTAAAACCGCAATTTCACTGGACGGATCAGAAAATCAGGGTGCATTTTTTTATTTGCGTCCTCGGATACCTAATGGCGGCGATTGTGTGGTATCAGGCAAAAGCGCACGCACAATTTAGTGGAACGTTAGATACCCTGTTAGACACCCTTAATAATATAAGGCTTTCTGCTATGCTTGAAGAAACAAAGGCCAGAGGGAGAGTTAAGGCTACCTACAAATTGGAAGAAATGTCCGACAAGGAATCTCTGTTGATGAATGCGTTAGGCATTATGGATTTCCACAAACATCGGCTGAAACTTCAAGGACTCAGTGTATACAATTGATGTTGTGCTTAACGCATTGACTGTATTTATGTTACGTTGCTTCATGCCTTATTTTGTGATAAACTCACGCTAGTAGG # Right flank : CGCAATGACAGGGCGTGACCCCATAAGCGCTAACTTGTTTTAGGTGCGCTCGAAGTATTTTGATATCTGTGTTTTTCGGATTCTTGTATTTTCTGCTAAAGAACAAGCAATGTCATTCCAGCACTTAAGAACTTCCTGTAATGATAACGCTGGTTCTATAGCCCGTTTTACTTGATTAAGCATAAAAGCAAATTCACGCCATTTGCTTTTAGTCTTCTTGCTTGACAATGAAGTATCCCCAGGGGGAAAAAGACGTAGCAAAATCTATTAGTTTTTCTGTCAAAAGAGCAACGAATAGTTTGCCATAAAGCCAAGCTTTTGAGCTATCATCATCGTATTTAGGTAAGTGTCCAAATTGTGCTATTTGTTTAAATCTTTTAAAGACCAGTTCAATTTGCCATCGAACTCGATACCATTCTAAGATATCAAAAGCGGTAAATTGATTTTCAGGAAACGTTGTGAATACTATTACGTACTTGGCATAAATAAGGGTCTCCGGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATTGCACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 5 496175-495108 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT934425.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 496174 29 100.0 35 ............................. GTGATATGTTAGAACTGGTAGCCTGAGAATCCCCT 496110 29 100.0 37 ............................. CTGAAAAAAGGCAGGAATTACGTGCGAAAACTTACAA 496044 29 100.0 35 ............................. GTGGTAGAAGAAATACAGTAAGGACACCGAATTTG 495980 29 100.0 35 ............................. GGACGTAGGGATCTAACCTCTGATGTTAGAGAGGC 495916 29 100.0 37 ............................. GCTTACATTCCATCTTACGAATACGTGGCTTGCACTT 495850 29 100.0 36 ............................. GTATTGGGCAAGCGCAGATATATACACTGCGTCGTA 495785 29 100.0 36 ............................. TGACAGAAAAATAAAGACATTTTTGGAGTACATACA 495720 29 100.0 35 ............................. CCCGTTACCGTACCATCTGCATTGAGAGTTGCCCC 495656 29 100.0 36 ............................. GGAGAATTTTTGGGTCGTCGCTTGGAACGGGAGAAT 495591 29 100.0 35 ............................. TAAAAGAGATACACTCGTATTTATATAGCACCCTT 495527 29 100.0 36 ............................. TGTGGCACATTTTCTCAAGCATGATCATTTCTGCTG 495462 29 100.0 36 ............................. GTAGAAACAATTCTCCCAATTATTGAGAAGTATAGG 495397 29 100.0 36 ............................. TATAAAGACCCCCTCCATTTCACACTCTGTGATATC 495332 29 100.0 36 ............................. GAAAGTGTTCAGGGTGATAACGAAGGCGAACAACAG 495267 29 100.0 36 ............................. TTGATTGCGGGAACAACAGGTATTCCAAAAAGGATT 495202 29 100.0 37 ............................. CTGTGGTGGTCTCGGACTATTTCAAGTTTTTTCCTAC 495136 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 17 29 100.0 36 GTCTCATTGCACCTATAAGGAATTGAAAC # Left flank : ATAAGCGTTTAAGGTTAAGAGAAAGAATACGGGAGGCAAGGTTTGGTACGTGTATCTGAGGAAGGATCAGGAAACGTGAGTTGTTTGCTATGAGTTTCAGGCGTTGTGATTTTAAAAATGGCGGCCATCCAATCCACTTATCGCGAACGGTACATTTTAATGCTGCGGCAGCCCAGCCGATCAAGGCAAGCCATTGTCCCTGTGATTCCGCTACGTAGCGAATTGATTCTCCTACGAGAGAACGAAATCCAAGGTAATGATGCTGGCGCATCAGTGTGTCCCAATTTGCCTGGTCGTTTTGTGAAACAGGACGAACGGTAATTGAATGAAGTAGTTCGTTGTGTGTGTTATCGATTGGTGTTGTATGCTGGTTCATGCCCTATAATATAAAATATTTTAGGGGGAATGTCCACGTTTTTTTACATATCTTTGTATATTATGTGCTTATGGAAAACTTTGACAGCGCCGTGGGGAGATTATACATGGCTAAATAAAATCAA # Right flank : TTGTGAGGTACAATAGGTCTTAAGTGCTCTAGCGTGAGTTTATCACGAAATAAGGTGTAAGACAAAGACATCAAGTTGCAATCCAATGATTTGTATCGGGTTGCGACTTTTTTTGTCTAAAAAATTATGTATACACTGAATAATACTATATTTATATTGCATTATATGCCTGTATATACTATTATACACGGAGTATTAATCTATTACGTATACACTAACAACTAATAGCCATGGCTACCATTCAATCTAAAAACTCCAGAGGTTATAAATATTGGTATATTGTCGAATCGCGGCGCGTTAACGGCAAGCCCAGGCCCATCGTCCTGGCCTATCTTGGCAAGGCAGACGATTTATTAAAACAACTGCAAGGTCTTACCGAAAAATTACGGCTCAAATCTTATTCACATGGCGCGGTAGCCGCATTGCTAAGTGTGGCCAATGCCCTGGACGTCCCTTCCGTGATTAATAAATATATAAAGTCGCCACGGCAGTATTGTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATTGCACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 6 498767-498283 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT934425.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 498766 29 100.0 37 ............................. TTTGTTTAAATAAATCTAAATTAAGTTTTTGTACAAC 498700 29 100.0 36 ............................. TTTATACCGAGGTTATCGGAGGTATCCAGCCTTATT 498635 29 100.0 36 ............................. TTTTTTGCGCCTGCCCGCCAAAAACAAATGGCATAT 498570 29 100.0 36 ............................. TTCTCAGGGGCGATTCCGACACCCTCGATGGAAACC 498505 29 100.0 36 ............................. ATAATTTATGGAAAAGCGGAGATAGGCCTCAATAGA 498440 29 100.0 35 ............................. AATAAAAAATACAATATTTTATTTTTCATATTTTA 498376 29 100.0 36 ............................. TGAGGACGAGAGCAGATGATACATTCTGCGCAACAA 498311 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 100.0 36 GTCTCATTGCACCTATAAGGAATTGAAAC # Left flank : ATACAAAATTCTGTGTTTGAGGGAGAAATTACCGAAGCCAGACTGGAAGAATTGAAGATAAAGGCAAAGAAGATCATGAACGAGGAGGATAAGGACTCACTCATTGTATTCAAATCAAGAAATGAAAAATGGCTGGATAAAGAGATTGTTGGATTTGACAAAAGACCGGTTGATAATATATTATGACTATTAGGTTTGCTTTGACTGTTGGAATACAATGATACGACAAAAGTATTTCATTGTTTGGATAAGTAAGTGTTTCGTGATGGCTAAATATTATAAAAAAACCTGTCGACCTTAGGGTAAATACCTGTTCGTACGTCTCTGCAGGTCTATTTAGATACATTGAAATGAAGGTTATCCCGTCATGAGATGACAGTTTAAGTACTACATGTCGACCTGCCGGGTTTTTTACATAATGAGAGGTAGACGAGCAAAATGGCCATTTTTCATACGAAAAAAAGTCATAAGTCTCTGTATTATTTGTACCCACAAAACTG # Right flank : GGTATTCGGGAGATTATCACGGCAACGTCAAAGTCACCCTACGAAAGACGCGGATCAAGAATTTGTGCCAAAAGCTCCCGTCAATAAGTGGAGAAGAAAGTTAAAAACGATAGGGTTCTCATGTAAACGGGCAAGAATGAGCAAAACAAGCAAAATGGAGCGGGAGTATCCCTGTAGTAATGAAAGAGATAGTAAAAAAATAAAGGCTTTTTTTTGTTCTCTACATTACAAGCGAAGCATTTGAAGTGCAAGAAAAGGTCTTGCCGCAAAATTTCTGAGCGTCTTTGCAATATTTGGTACATTGAGAAAATGAAACAGCCCAACCACAAGGTTCTTCAAAGAAGCCATTGCCCTTGGGGCATTTTGTGTGCGTATTTGAGAATGGTCTTCACGGAAGGAGGTATCACGCACATAATGAAGTCCATTTTCTATTGACCAGTGTCCGCGGGAAAACTTAAGAATGGTTTTGGGACTTGCTTTTTGTTGTGTCAGGCTGGTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATTGCACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 7 2969924-2962833 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT934425.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen chromosome Kuenenia_stuttgartiensis_MBR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2969923 30 100.0 36 .............................. AATTGTTTAGAGCATATGTAAGAGATACGGCAATAA 2969857 30 100.0 37 .............................. ATATTATTATATCTCCGGTCTGTATTGATTTTACTAC 2969790 30 100.0 36 .............................. TCAAAACAATCTTGACAATAATCTTCCCCATCATGC 2969724 30 100.0 35 .............................. TTAGGCTTTTTCTCCTTTTTAAGATATTCTCTAAC 2969659 30 100.0 37 .............................. CTAGTTTTGCAAAAACTTTTTGCTTTTCTAATAATTT 2969592 30 100.0 37 .............................. TGCTGTTGAAAAACCCCATGAAAAATGCGATTTTTTG 2969525 30 100.0 37 .............................. GGGTTTTCGGCATAGGCTTTTTTTGCCTTTAGTTTAA 2969458 30 100.0 37 .............................. CAAATATTTAGCTTTTCTTTCCTGCGTTTCTTTAAGT 2969391 30 100.0 36 .............................. CAAATATTTAGCTTTTCTTTCCTGCGTTTCTTTAAG 2969325 30 100.0 36 .............................. GTGCTTCAGTGCTACGCACTGCACTGCACTGCACTG 2969259 30 100.0 39 .............................. AAGAAACCGAACCATTTTTAAGACTTTTTAATGGCTTGC 2969190 30 100.0 36 .............................. AACATAATCTCCTTCTTGCGCAAATTTGACAAAACC 2969124 30 100.0 36 .............................. TGTAAATTTTTCGATCTTCTTTATGCGCAGCATACC 2969058 30 100.0 36 .............................. TAGACTATAATTATGAACAAACCAGAAAATATGTCC 2968992 30 100.0 36 .............................. CTGCTACCCTCGATGGTTTTCACCACTGAGTGAGTT 2968926 30 100.0 38 .............................. CTTTTCCATACTTCTCAAAAAGCATACCATTTTCATCT 2968858 30 100.0 36 .............................. TCTTGCAACTGAACCCAAACATAATCTCCTTCTTGG 2968792 30 100.0 36 .............................. ATATTAAAATAATAAAATAATAAAATAATTTAAAAT 2968726 30 100.0 36 .............................. AAAAAATGGCATGCTTTGAACAAAGAAAAAGCAAAC 2968660 30 100.0 37 .............................. TAAATATTACCGCTCAAAATCTCGCCAGAGTCTAAAA 2968593 30 100.0 38 .............................. TCGTACATCCTGTCTAATGCCGGCACCGGCACAGATAA 2968525 30 100.0 37 .............................. AACTTCCAACGGCAGCATTAACCCTTGCGTCTGTGTA 2968458 30 100.0 37 .............................. CCCGTAGAAGTACTTGTTCCGGTTACGCCAGAACCAA 2968391 30 100.0 37 .............................. CACCACAAGCACGCTTAAAATACGGTACGATTTCAAT 2968324 30 100.0 38 .............................. CAAAGCGTGACTGGTAGCGGTACTACGGGATATTTATC 2968256 30 100.0 38 .............................. TTAACCCTTGCGTCTGTATAATATTTATTTGTACTGCC 2968188 30 100.0 36 .............................. TCGATTTTGCCGCTTCCATCTGCGATAGGGATACCA 2968122 30 100.0 37 .............................. GAGTGCAAGATCGAAGCAAAAAGTTTATTTAATTTGC 2968055 30 100.0 35 .............................. CCCTAAGTCCAAAGAATGGTTGTTTACTATCGGGG 2967990 30 100.0 37 .............................. ACATAATAATTGGTCATTGCCATTCAAGTGCAATAAA 2967923 30 100.0 35 .............................. AATGCCTACAACAAAGTTAGGTGGAAAAACCATTC 2967858 30 100.0 36 .............................. TTTAATCTTTCTTTAGGAAAATCTTTTTTAAGAATT 2967792 30 100.0 36 .............................. ATATGTTTAATGTGGTTATTTGGGTGTCCAAAAAGA 2967726 30 100.0 36 .............................. AAAGACAATAAAGTCCCTGATGTAATGTTCCCTTGA 2967660 30 100.0 37 .............................. TAATTAATTCCACTAATAGTTTTAATTCCAATATCTA 2967593 30 100.0 37 .............................. AGGGAAGAAATCCGGTCTTGCAGCTCCATTCGGATTT 2967526 30 100.0 40 .............................. TCATAAAATTCCATATCAACCACGGCGTGAGAATTTGAAG 2967456 30 100.0 38 .............................. ACAACCCGAAATCTATTATACTGGATTCTTTTGCCACA 2967388 30 100.0 37 .............................. TTGAAGTAATCTTCTACTTCTTTTTGAAATGCCGGTA 2967321 30 100.0 37 .............................. CCGCAAGCGTTGCTAATGCCTTTTCGCGGAATTGAGC 2967254 30 100.0 36 .............................. TTTTTCCTAAAAACCATTCTTGTGCGTGCAATGCCC 2967188 30 100.0 36 .............................. CCAGTCTTGCGGCTGTAAGCGTAATACCTACGCCAG 2967122 30 100.0 35 .............................. CCGCAATGCTTTTCTTTTGGCAATCTTTGCAGCAG 2967057 30 100.0 36 .............................. TCTAGATGTGCTGGAAAAGCTGTATCAAGCGTTTCC 2966991 30 100.0 35 .............................. ATCGTTTGGGCGATAATGTTACTGTTTGTAATTAT 2966926 30 100.0 39 .............................. TTTATTTCCAATTTATCAAAGAGTTCTGCATAATTCCAA 2966857 30 100.0 36 .............................. CTGGTATTATCCTTAGTACCTTAGTACCTTAGTACC 2966791 30 100.0 33 .............................. CCAGCTTTGTGCAATTCAGCAATCCGGGTACAA 2966728 30 100.0 38 .............................. TAACGATGTACATTTGTGTTGCGGTTACAATTTTATAT 2966660 30 100.0 37 .............................. GAAAAGGAGCCGAAATGAATATTGAGACAACAAAAAC 2966593 30 100.0 37 .............................. TTCTTCCCCCTCAGCGATAATGTTGTGTTTGTAGTGC 2966526 30 100.0 37 .............................. AAAAACATAATATATTATGTTGGAGGAAAAGATATAG 2966459 30 100.0 36 .............................. AGTGTTAAAGAAAAAGACATATAATGTAGAACTGCC 2966393 30 100.0 37 .............................. TAAATTATTGCCGTGGCCCGAAACAATGTTTGTTTTT 2966326 30 100.0 38 .............................. AATTCCCTTTGCGAATTAGGCAATTCGGACAAACTTTA 2966258 30 100.0 37 .............................. AAGTATTATGTCCGAAATATAATTGATAATAGTAATC 2966191 30 100.0 37 .............................. AGAACCAAAATTTGACGAAATCCCATTCTAAATTTAA 2966124 30 100.0 37 .............................. ATAATCCTTGCACAAAATTACATAGGTAGATATGCAA 2966057 30 100.0 36 .............................. TGTTTGAAGCATAAAGGTTTAAAGGATGATTGCAGG 2965991 30 100.0 35 .............................. ATATTATACTAATGCAAGGGTTAACGCCGCAGTTG 2965926 30 100.0 38 .............................. TTCCTCTATCCCCCAAAATCTATTAGACACTTCTAAAA 2965858 30 100.0 36 .............................. TTATCTTTTCCTCTTTTTTCAAGACGGTGGAAAAGC 2965792 30 100.0 35 .............................. GAATATGGCAAGCATGGTACTTGATTCTATAGCGC 2965727 30 100.0 35 .............................. TAGTCCACCTCGCAACGTATTGGTACTGCATAGCC 2965662 30 100.0 36 .............................. AAGACAGAAACAGAACGAAAAGCTGAACAGAGGCGG 2965596 30 100.0 37 .............................. TATATTGATAATGATATATTAATGTTATGTGATTTAT 2965529 30 100.0 36 .............................. GGGTCAGTACCCTGCCTGTTGCTAATGCCTCTTTAC 2965463 30 100.0 38 .............................. TCGGGAAAATATTGGTAAAGAGATTCAGGATTTGTCTG 2965395 30 100.0 36 .............................. GCCTATCATACCACCTATCCAATCGTTGTTGTCTCA 2965329 30 100.0 36 .............................. CCTCACAGACGCGCTAAAAATTTCTTCAATTAATAA 2965263 30 100.0 36 .............................. CGGGGGAAATGAGCGGAGAGGAAAAACAAGCATCGG 2965197 30 100.0 38 .............................. CGATAAGGCGCAAAAGTGGTATAGTCCCCAGCAGTTTC 2965129 30 100.0 39 .............................. TTGGAAGATTGCATTGAAAACGCCTATACATGGAATACA 2965060 30 100.0 36 .............................. GAAGTTAAATCCCTGCGTCCTGGGATTTGAACTGGG 2964994 30 100.0 38 .............................. AGACAATGGACTGCAAACTTGAAAAGAATGGAGTTTAT 2964926 30 100.0 37 .............................. ATTTGTTCAAAAGCCAGTGCCCCGCCAAACCCAATCC 2964859 30 100.0 35 .............................. GCAATGGCTGGTTGATTATTTTACTGGCGGCACAA 2964794 30 100.0 36 .............................. TTCGTTCGGGGGGAGGATGTTAGCGAGTATTTGTTT 2964728 30 100.0 36 .............................. TGGATTCTTAGAGACAACGCCGGGGAACGCAATCGA 2964662 30 100.0 35 .............................. CGAAGGGCATCTATTTTTGCCTTGAATCCTGCATC 2964597 30 100.0 40 .............................. CACCTTGCGCGTGTGAATAATTTTCCACCCCCGGCACGAC 2964527 30 100.0 37 .............................. AGAGTTCGATTTTTCTTTTCTGAACTAGCCATTTTTC 2964460 30 100.0 37 .............................. CAGTGTAAGTAGTTTTATTATTCGCTATGATTTTAAT 2964393 30 100.0 37 .............................. ACATCTCTACAACTTGAACAAACAAAATATTTATCGC 2964326 30 100.0 38 .............................. AAAGACAATAAAGTCCTTGATGTAATGTTCCCTTGAGT 2964258 30 100.0 36 .............................. CCATGTTTCTCGTAAAAATTTGTTTTACAGCGGTTG 2964192 30 100.0 37 .............................. AATGCAATGTCCAGTTTCCCAACATCTCTACAGTTTG 2964125 30 100.0 36 .............................. GCGCCTTTTCAAATTCCTTTTGCGCCTGGCATTCAG 2964059 30 100.0 36 .............................. GACACTTCCAGTTTTCGAGACGTCAAAAAAATCCTT 2963993 30 100.0 37 .............................. TTAAATGTTGCATTAGGGAATTTACCAAATATGCATG 2963926 30 100.0 36 .............................. TTTTTCAAAAGGAAATGCAGAAGCATTTGATTTTTG 2963860 30 100.0 37 .............................. TTCTGAGAATTCATTTTAATCATAATGCTTAATTCAT 2963793 30 100.0 37 .............................. TACATTGCAGGGATATTAAGTGTCTCTCTATGTGAAT 2963726 30 96.7 35 .....................G........ AGCCGCAAAAAGGACAGCAATGGATACGGACAGAC 2963661 30 100.0 38 .............................. TAACTTTGTCCTAGTCCATACATTAACTCTAAACGAGA 2963593 30 100.0 37 .............................. AGATAGACGAATACAGGGAAATACGAGAGAAAGACGA 2963526 30 100.0 37 .............................. GTGCAAAAACCATTCGTTAATTTATGTTGACAGTTTT 2963459 30 100.0 36 .............................. GGATTATCCCAAAGCACATTGGATCGATGCCGCCTG 2963393 30 100.0 36 .............................. CGGGTACGTACCAGAGCACCGTCTCGTCATGGAAGT 2963327 30 100.0 36 .............................. TTTCCCATATCTCCTTTATAATGTGGCCTCTCCAGC 2963261 30 100.0 36 .............................. GCGTGCGCCGCGACATGCCTTGCCCATTCGAGCTGC 2963195 30 100.0 36 .............................. AAGATGGCGAAATCCACTTTCCAAAAGCGACAGGAT 2963129 30 100.0 37 .............................. CAATAACTTGTTCGTCTTCTGCAACACAAAGATCGCG 2963062 30 100.0 35 .............................. AAACTTTCCCGATTGATACAACTTTCCGGCAACTT 2962997 30 100.0 38 .............................. AGGCCTTCACTAACTGTATTATTAATCTGCACGTTTGT 2962929 30 100.0 37 .............................. GGGTACGGGAGAATTACAAGTTGCACTATTATAATGA 2962862 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 107 30 100.0 37 GTTTTCATTCTACCTATGAGGAATTGAAAC # Left flank : GTAAGTTATCGAAGACTCATGAGGCTGGAGCTTTACAAACTGGAAAAACATCTTATGGAAGAGGAAACATACAAACCCTTTGTTATGGATTGGTAATGTTTGTTATATTGTACTATGATGTCAACAGTAAGCATTGCGGAAAAATGGTGAAGGCTTGCCGTAAGTATCTTCAATGGGTTCAAAATTCGGTTTTTGAAGGTGAAATATCAGAAGCTGCATATGAAAAAATGATTTTAGAACTTAAAAAAATAATTAAAAGTGAAGATAACGATTCAATTATCGTTTATAAATTCAGACAAATGAAATACTATGATAGATGTGTTTATGGCATGGATAAAAAGGATGATATTCAATTTATTTAACATCTGTCGACCTTTGATACAGAAAAATCTATTAAAGATCGACAGAAAATGTATAACATTTTTAGAAATTTATGGCATTTTTCCTTTTAAAATTGTTTAAAAAGCGCTGCAGAACGTCTTATCTCGCTTAAATGGCTG # Right flank : CAACTATTTGAGTGGCTGTACCTTACCCGCCGCGAGTTTTCATTCGTAACTATTCAGCGTAATTTATTAAACTACCGGAGATCAGAACGTAATTGCACGGGAAACTTTGTTTCCGGTGAGGGTCTGACTTTACAAATTACAAACTGTCTTAACCCTGTGATTTTATTCCCTATCTATCAGCAAACAGGCGAGAAACCGGAGTTTCTCGAACAATTGCGTTCCCAAACTGGAGTTTGGGAACGAGCCGTGTATCGTTTACGCTGAATAGTTACTTTCATTCTACCTATGAGAATTTGAAACTGGAAAAACCCAGCCGCTATCCGCCCTCGTTTTCATTCTACCTAGTATGGCATTTCATTAAAATATCTACATTGATACCGTCATTGCAAGCGACAGCGAAGCAATCTTAAGTTTTTTGGGAACAAGAGATTGCTTCGTCGCTCCACCCCTCGCGATGACATTTTTTTACGTACACATTTTAACGAAACGATGTACTAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //