Array 1 111227-113879 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAL010000034.1 Salmonella enterica isolate 02958_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111227 29 100.0 32 ............................. CCAGGTTGCATCGGCCTGGCTGTATACCGCCG 111288 29 100.0 32 ............................. GGATCGTGACGCACTGGCATCTTGCCGACGCA 111349 29 100.0 32 ............................. TTGTTGAATTCAAAAGGTTTAAATTTTGTTTT 111410 29 100.0 32 ............................. GCCATACTCAAACAGTTAGGCCTGAATTAAAA 111471 29 100.0 32 ............................. CGGCGGAACGTCTCTATTTCCTCAACGGGGAC 111532 29 100.0 33 ............................. TTACTCCTGCGGCGCACGCGAGTCAAGCCATGC 111594 29 100.0 32 ............................. GTTATGCGCCAGTTGCCGGAAACGCTGATTGA 111655 29 100.0 32 ............................. GTTCATCTCAAAGTAAGGAAAACGTAATGAAT 111716 29 100.0 32 ............................. TGTTCATGCTCAAGCTTCAGAACACGCTTTTC 111777 29 100.0 32 ............................. CCAGGTTGCCAGTGCATTTATATCCTGCGAGG 111838 29 100.0 32 ............................. TTGGTAATGCCGCCTGGGTTATTCAGGATATA 111899 29 96.6 32 ............................T TTTATTCCCGCCTGATTATATTAATCAGTTGC 111960 29 100.0 32 ............................. GTTGCTACGGAATTTCAAATATCAGCGATGTA 112021 29 100.0 32 ............................. CAGAGGGAAAATCTTCCATCCTCTTGATGCGT 112082 29 100.0 32 ............................. GGGGAAAACTACTATAAAACGATGCAGCAGGG 112143 29 100.0 32 ............................. CCTGGACGTTAGCGCTGCGCGGGGATGCTTCG 112204 29 100.0 32 ............................. GTAAAAACGTCGGCCGATCTTCCGGTAAGTAG 112265 29 100.0 32 ............................. GCGATCGGCGGCGAGTGGATTCACCCTCACAT 112326 29 100.0 32 ............................. GCGAAGGTGGGTTAAGTCGCTATCAAATAATA 112387 29 100.0 32 ............................. ATTGGGGTGCAATTTGTAATGAAATGGTTATT 112448 29 100.0 32 ............................. CGCTTAACTTATATTTTACTCGCGTTTCTGGA 112509 29 100.0 32 ............................. CCTTAAATTCATCCAGTTACCACGATATTAAA 112570 29 100.0 32 ............................. GCCGCAGTCCAGTGACATTACAGCGCTGGAAA 112631 29 100.0 32 ............................. GACTGATTTTCATTGTTCAGTTCCTCGCGGCG 112692 29 100.0 32 ............................. TTAGATGTTATACTGAATACAAACTTTAAATT 112753 29 100.0 32 ............................. CTTGCGGTGAAATTAACGCACTTCAACTACCC 112814 29 100.0 32 ............................. GTGCCGAGATTGATTACCGCGAAATTCTGGAG 112875 29 100.0 32 ............................. CGCTCACCAGATCGCCCATCCCTGGCTGGCAC 112936 29 100.0 32 ............................. ACATAACAGAAAAAATTAGAAGGGGACTTGTT 112997 29 100.0 32 ............................. TCTCTAACCGTTCCTCCTGAGATAAGCAAAAC 113058 29 100.0 32 ............................. AAAACGCAGGCGCGCGCGATAGTAGACAGTGA 113119 29 100.0 32 ............................. CTCTGATAAATCATTCTCTTTTTTCATTACCA 113180 29 100.0 32 ............................. ACGGTTTTTCCGTACCACGGTTCAAAGGAAAT 113241 29 100.0 32 ............................. TCTGATATCGCTTCTTATGGACAAACGCGCGG 113302 29 100.0 32 ............................. CGAGTTTTTATATCATCTGCGGGTCTTATTAA 113363 29 100.0 32 ............................. TTCACTGGTGATGTGGAATTAAAAACACTTGA 113424 29 100.0 32 ............................. GACGCAATACCAGATGAAAATAAACACATTGC 113485 29 100.0 32 ............................. TCGTCAGGTGACGCGAACGCCTGAAACGCCCG 113546 29 100.0 32 ............................. TTCCATATTCAATCGTTAATTATAGAAATAAT 113607 29 100.0 32 ............................. GTTATTACGTCACTATCCTTTTGCGATAATTT 113668 29 100.0 32 ............................. TTAGTAATTAATAAAGATTTATCTCCATTGGG 113729 29 100.0 32 ............................. TTGTGGGGTCTGCATACATAGATAATATCCCA 113790 29 100.0 32 ............................. GTTGACGATACATACGAAGTAAAACAATCTAC 113851 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTAGCCGCCGGAGAAATCGAACGCCCTCAACCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGGCCAACACAGAATCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGCGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTTTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGA # Right flank : ATATATTTATATATCTATACCCAATAAACCTCAAGATGCGGGTGTGAGCACCTGAAAGTGATCGTTAATTCGGGATGTCAGTGAGTCCGCTATATCCGGCAGCGTCTGGTTAAAAAAGACAGATATTGCATCCCTGAACTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31027-27761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAL010000005.1 Salmonella enterica isolate 02958_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31026 29 100.0 32 ............................. CCCACGGCGCAAAAATCGCGATTAGCGCGCCA 30965 29 100.0 32 ............................. TGCGCCACCAGCCGGAGCGGCTCCCCGGGCCA 30904 29 100.0 32 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAA 30843 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 30782 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 30721 29 100.0 32 ............................. CAGATTCCGGGCTTCGTACGCCGTAGCCCAGA 30660 29 100.0 32 ............................. TCTGTTGCTACCTGGCTATCGGCATCGCATTC 30599 29 100.0 32 ............................. TAAATCAAAAAATTGGAAATACATTTTACGAT 30538 29 96.6 32 ............................T GACGGCGGAACGCGTCGAACTTGAATTTATTC 30477 29 100.0 32 ............................. ACTCCTTAGCATCTGTATTAAGTGAGCCCCAT 30416 29 100.0 32 ............................. GAGATGATAGTGGTAATATAAATGTATTAAGA 30355 29 100.0 32 ............................. TTTTGATATACATCAGAATAGTTTTGACTGTT 30294 29 100.0 32 ............................. CACGCAAGCTGCTCCGCGATTGGGAATGGGCT 30233 29 100.0 32 ............................. GACTAATTTATTCTGGCGTATTGCTGAAGACA 30172 29 100.0 32 ............................. CGGGTATACTACTATGGATTACACATTGTTTA 30111 29 100.0 32 ............................. GATTACACATTGTTTAAAAATCCGGATAATTT 30050 29 100.0 32 ............................. GTGGACGATACATATGAAGTAAAACAATCTAC 29989 29 100.0 32 ............................. ACACTATTTCACGCGCTGTTTATAATTCTAAA 29928 29 100.0 32 ............................. AATACATAGAAACTTTTTATAAACCATCTAAT 29867 29 100.0 32 ............................. GGATAGTTTTAGCAAATTCAGGCATTGAAACA 29806 29 100.0 32 ............................. GCGTTATCTGCCCGTCATTTACTGCTACGCGT 29745 29 100.0 33 ............................. GATCTGGAAAAGGCGGTCAAAAAGAATTACCCG 29683 29 100.0 33 ............................. AGCGCCCTGCGGGAACTGGTTGAGGGCGGCTGG 29621 29 100.0 32 ............................. GCAACTTTTTTAACTATTGCGTGGGAACGGAA 29560 29 100.0 32 ............................. ACGAAATTCATGATGTGGCGACCAGCGTGCTC 29499 29 100.0 32 ............................. GAAAAACGGCCTTCGCTGTCTTGGTGGATAGA 29438 29 100.0 32 ............................. GTAACGTTATTAACAAATATACGAACGATAAA 29377 29 100.0 32 ............................. CGGTTATACTACTATGGATTACACATTGTTTA 29316 29 100.0 32 ............................. GGTTTTACACGTTACTTAAATATAAAAAACAA 29255 29 100.0 32 ............................. ATTCCGGTATATAATATTTTTCGACTTTAGTT 29194 29 100.0 32 ............................. AGTTATTGTATATTCATTCATTTGCTGATGAT 29133 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGATCATCGG 29072 29 100.0 32 ............................. GGGCTGGAATCAGCGGGAGCTGCTGGGGCTGG 29011 29 100.0 32 ............................. TCCGCCAGCGGTACAAAATTTGGTAACCCAAA 28950 29 100.0 32 ............................. TAATTGGTTTTTTTTCTGGCAATTCAGCTACC 28889 29 100.0 32 ............................. TTGTTAAAGTTAAAGAAATCATTAATCCAATC 28828 29 100.0 33 ............................. GCGAGTCCTGTTTCTGTGTTGTAGCTTTTTGCA 28766 29 100.0 32 ............................. ACCATTAACGAGCAAATCAACAAAACGCGAGC 28705 29 100.0 32 ............................. ACCATTAACGAGCAAATCAACAAAACGCGAGC 28644 29 100.0 32 ............................. GGGAAATTAATTGTTGTATTCAGGGCGCCGAT 28583 29 100.0 32 ............................. TGCGCGAGGAGGTGTGCGACGAATATCGCGGA 28522 29 100.0 32 ............................. ATAGTGGCGTTATTGTGTTGGGCGCTGCTGCC 28461 29 100.0 32 ............................. ATTAGACCTCTATCCAGTCTTTGGGAATTACT 28400 29 100.0 32 ............................. TTACCGTGGCAACAATTGATTCAATAGCGAAA 28339 29 100.0 32 ............................. ATCAGGTATTTTCTACTGACACCATCCCTATC 28278 29 100.0 32 ............................. TGACTTTGTTTCTCCCCAAATGCCACGTAGAC 28217 29 100.0 32 ............................. ATTGTATTCAGTAGATTTAATAAGATTAACAA 28156 29 100.0 32 ............................. GCTGTTGAAATTAAAGACGTTCAGGAAGTCGC 28095 29 100.0 32 ............................. GGTTCTGATTTACGGAGAGGATCAGCAGGACG 28034 29 100.0 32 ............................. AAAAACGACACTCAACAGGCACGGAGCGTGAC 27973 29 96.6 32 .............T............... CACATAGAACGCCAGTTATAATCATCGGTGCT 27912 29 100.0 32 ............................. AATATGATTTTTTTGAAGGCGATGACGGGAAA 27851 29 100.0 32 ............................. GGGGGCGTTCCGCAGTCGATAAGGGCTGAAAA 27790 29 93.1 0 A...........T................ | A [27763] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAGCAATCATGGCAGAACTCCAGCCTTCGGAGGCCAGAAGAATGGCTTTAATACGATCCCTGACTCGCCCGTCACGACTGGAATCGTGAAGGCGCTCAAGTTCAGCTTTTTGTTGGTCAGTGATGAATATTTTCATGTTGGACAGCATGATCTCCGGTTACTGAAAAATCAAGCATCTTCAATGATCACGGGTATATAATCATCAAAACC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGTGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1202-5990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAL010000046.1 Salmonella enterica isolate 02958_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1202 29 100.0 32 ............................. GCATCTCTCTGGCTAATATCCTGCACCCGTTC 1263 29 100.0 32 ............................. TGGGCCGCCGGAAAATCGATTTACTACAACAC 1324 29 100.0 32 ............................. AATACTGCTATCGCTAGTTCAACAGAATCCCC 1385 29 100.0 32 ............................. CTAACGATTGTTGAAGTTGCGGCCGTAGTGCA 1446 29 100.0 32 ............................. CAGATTGAGCAACATTTGTGCAGAATCAAACC 1507 29 100.0 32 ............................. GGATCGTGACTCACTGGCATCTTGCCGACGCA 1568 29 100.0 32 ............................. ATGTCAACAATATGGGGGAACTGGTCGCCGCC 1629 29 100.0 32 ............................. CCCAATATTTCGGAGTGGCCCAACGACGCCGC 1690 29 100.0 32 ............................. ATCGATTAGCAACAATACATATATTGAATAGA 1751 29 100.0 32 ............................. AGATACATCTTGAGCTATAGGCTAAAAATAGT 1812 29 100.0 32 ............................. GTAATTGACTGGGACGCGAAGCCGGACGATGG 1873 29 100.0 32 ............................. CCGTCGCTGAAATTATTCAGCCTGGACATGAG 1934 29 100.0 32 ............................. CGCCAGCACGCTTGTTTCGGGGTTGAAGCAGC 1995 29 100.0 32 ............................. TGCTGCTCCCTTCGTATCGCCAGGCGGAATAA 2056 29 100.0 32 ............................. GATCGTGATTACGCCAAATATTTAATGAGAGG 2117 29 100.0 32 ............................. GAGTTTGCAAATCTCACCACATACCAGGCGCG 2178 29 100.0 32 ............................. GGCGATCAGTTTAATATCGATCTTGATTGTGA 2239 29 100.0 32 ............................. TTTGTTGACGAAGATTATATTAAATATCGTAC 2300 29 100.0 32 ............................. GTTGACGACACATACGAGGTAAAACAGTCCAC 2361 29 100.0 32 ............................. TTAGAGTGTACTTATATAAGAGTATGGGATAT 2422 29 100.0 32 ............................. CTGAGTCAGTAAATCCGGGTGATGAGGCTGAG 2483 29 100.0 32 ............................. CGCCTGATATTGGTGAATTATAATTAACTGAT 2544 29 100.0 32 ............................. ACTAAATATCAACTCCGTAAGATCGACCCACA 2605 29 100.0 32 ............................. TTGGCACATTTGGTGTTTTAACCATTAAACAA 2666 29 100.0 32 ............................. CGCGTATATTCCAGTAAATATTCGTCGCTCAT 2727 29 100.0 32 ............................. TGGGTGATTTAGTTAAACCGTTAGCTCAAAAT 2788 29 100.0 32 ............................. GTGTAAATATTGAAGTTAATAATCAATTATAT 2849 29 100.0 32 ............................. GCGAACGTCGGGACAAAGCACAGACCTGCTAT 2910 29 100.0 32 ............................. TTCATCTGAATTACCAATAGTAGGGGTTGAAA 2971 29 100.0 32 ............................. TTTCTATTAAATCAAGTGTTTTTAATTCAACA 3032 29 100.0 32 ............................. ATAAATTACTGTCACAATATATGGGAGAAAAA 3093 29 100.0 32 ............................. AATTTAGTTTAACTTGTTCAATGTTTTGATAT 3154 29 100.0 32 ............................. ACGATATATACGGTAAAGTTGACTTAATAAAA 3215 29 96.6 32 ............................T TGTTCAAATGGCGAATACGAAATTAAATTATC 3276 29 100.0 32 ............................. AGCTGGCACTTAAATTTAGTAGTGCGCCGCCT 3337 29 100.0 32 ............................. CTATTCAGACACTACGGATCATACCTCGTTGA 3398 29 100.0 32 ............................. TGGATTTTGTTACACTTTTTTACATGTAGAAA 3459 29 100.0 32 ............................. CGCTTAACTTATATTTTACTCGCGTTTCTGGA 3520 29 100.0 32 ............................. GTCCCCGGTTCCGTTCCTGATTGGATATTCAA 3581 29 100.0 32 ............................. ACTTACGCTAAAAACGTAAGTCCTTTTGTTTT 3642 29 100.0 32 ............................. CAGTCAGCGGGATTTCCTGCGTGTAATGAAGT 3703 29 100.0 32 ............................. AGATATATACCATTCTTTTGTGTTTTTTTCTT 3764 29 100.0 32 ............................. ACCCGTACACGTTCAAAATTAAAATCTACCTA 3825 29 100.0 32 ............................. TCATACCGTCGCCTTCTTTTTGAAAAATTGGA 3886 29 100.0 33 ............................. TTGGCAACATTTCCAGACTTGAACGGGGTATGC 3948 29 100.0 32 ............................. GGCGGGAACCGCTGAAATTCGCTGTGTTGGAC 4009 29 100.0 32 ............................. GAGGCCGTAGCGCTGGCGCTGCGTGATGATAT 4070 29 100.0 32 ............................. CAAGCACAATCATTTTTGCTCTATGCTCCGGT 4131 29 100.0 32 ............................. TGAATTATCTAATTTTGTAGGAGAGGATAATG 4192 29 100.0 32 ............................. CGCAGCTCCTGAACGCCTTAAAACGGATGGTC 4253 29 100.0 32 ............................. CCGCTGGGGCTCTCTCTTAAGGTTCGTCTTTG 4314 29 100.0 32 ............................. TTGTTTTGTTTATTTAATTAATCATTATCAGC 4375 29 100.0 32 ............................. CTGCTTGCTTGTTCTATCTTGTCGGTTAGATC 4436 29 100.0 32 ............................. GCAGCGGGGCGCGGTAGTGTACCTGAGTTAAT 4497 29 100.0 32 ............................. GATGGGCAAAAAGTACGGGCGCCTGAATAAAA 4558 29 100.0 32 ............................. CGCGGGAGGACGGCTCAACCGCGTTCACTGGT 4619 29 100.0 32 ............................. AAACCTATCACCCTGTTTAATACCCCGATCCG 4680 29 100.0 33 ............................. GGCGTACCGAATCAGGGAGATTCCTAGACGAGC 4742 29 100.0 32 ............................. TAGTAAATTTAATCAACAGTTAAATCCTCAAA 4803 29 100.0 32 ............................. GCTATTGTTACGTCATTTTCTTCCACCACTCA 4864 29 100.0 32 ............................. GGCGCAGGCGGTTCAATATTCCAGACGGGAGC 4925 29 100.0 32 ............................. AATTTCCTTCCCAGCAAAGGGATTATGTCTGT 4986 29 100.0 32 ............................. TGGTGGGCCATCTGTAGCGTCCCCATCAGTAC 5047 29 100.0 32 ............................. TAAAATGTATGTTTACCCCCTGTTTACTGCAA 5108 29 100.0 32 ............................. GCATTTTTTCATCTTGAATTTAGATGAGCGCT 5169 29 100.0 32 ............................. AAAAATGAAAATGCGTTATTAAGCTGGGACAA 5230 29 100.0 32 ............................. CTGCCGTGTGGGCTGTTTGAGCGAACGGATAA 5291 29 100.0 32 ............................. ACAGTAAAACGCCGGATTGATGTTCCGCTGGA 5352 29 100.0 32 ............................. GATAACAGCCAGGCGAATACCGCGACGGCAAC 5413 29 100.0 32 ............................. GAAAACCGCGACGCAGTAGAGGCAACCATTTG 5474 29 100.0 32 ............................. CTCATAACCTCGATGGCCTGTCTGCTAATGAT 5535 29 100.0 32 ............................. TTATCAAGCCGCCCTCCGGGCGGTTTTTATAG 5596 29 100.0 32 ............................. GTCGCGAGTACGGTTTTAAAGGTGAGTTTGAA 5657 29 100.0 32 ............................. AAAAAATACCCAGACAGCGTTTACGGCGAGCT 5718 29 100.0 32 ............................. CGGGCAATGATGCGCGAGCTATTCCGGCCACA 5779 29 100.0 32 ............................. ATGGGGATCGGCGAGTCGTTCGTGTTTGCTAT 5840 29 100.0 33 ............................. ATCTGTTATTCATTTAAATATATAAACCTGTGC 5902 29 96.6 32 .................C........... GGCGGCGCGGCGTTCGGTGTGGCTCAGGGCGC 5963 28 89.7 0 .C.....................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 79 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGACTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAGATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATATTTTATAAACAATGGCATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGTTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //