Array 1 27170-26660 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBJC02000015.1 Pseudocitrobacter sp. RIT 415 RIT415_S6_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27169 28 96.4 32 ...A........................ GCCGGTCATTCCTGACGCACTCACAACCGCCG 27109 28 100.0 32 ............................ CCCACGCCTGTCGCCGCTGTTGTCTGGCAGTT 27049 28 100.0 33 ............................ ATCATGGCTTTATTTATATACACCACACCATTT 26988 28 100.0 32 ............................ TCGACCGTTATGATCTCGCCGTGTCTGACTCA 26928 28 96.4 32 ......................C..... AGCCGCAAACGTGCAGCAGGCGAGGCGACAGA 26868 28 100.0 32 ............................ AATACTTCGCCCGTTTCGAAAAATGAGAGGGA 26808 28 100.0 32 ............................ TGGCGGCGGAACTGCGATTTTTGCGCCTCGCG 26748 28 100.0 32 ............................ GCTTCGAGTTGATAGTTATAAGCCTGGAACAA 26688 28 82.1 0 .......A...CG..C......A..... | C [26665] ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCGGACATCACTGCCATATCTGAACATCAAAAGCTTATCAACCGGGCAACAGTTCAGGCTATTTATCTCTCATGGTGAATTACTGAATGCGCCTGTTAAAGGCACATTTAGTAGTTATGGTTTAAGCGCCGTCGCGACAATCCCCTGGTTTTAAGTTCAACAAATACCGCCCTGTAAGGGGCGGTACTGGAGAGTGATTGCCTGATGCGCTTCGCTTATCAGGCCTACGAGGTTTCTGCAATATATTGAATATGCGTGGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAACAGAACGCACTTTGTCAGCAGTTTGAGACACAGCCCTGTTCACCCATTACTTTCCGAATCTATAGGAACCCTTTTTCTGATGTTAATGTAACTTGTTGATTTTTAGTGAGCGTAAAGAGCAAGGAGAAAAAAGGGTTAAGAGAGGAGATTTGATGTTTTGTTTAGTTTAACCAATGGGGTAGGGTTATAACGCTTCA # Right flank : CTCGTTCTCAGCGATAACGTGCTGTCCAGGCAGTCATTACGCCACAAACGGAAAAGGCCGGGGATTTCCCCGGCCTTTCAGCATCTGGTTGCCACTAAAGGGCTCAGGAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAACTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCAAGTTCTACGCGGAACATAGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGTATCACTACCATAGTTTTTAACCGGCAAGATAATGCCGAACTTCATCATGTAAGTAAAGATTTTGCGAATGAATCGCCGAAAGTCGTTTTTGCGCATTACCCCATCGCCACACGAAAAGAGCGTGCGAGTAACGCAGACCGGGTTGGATACTGCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37215-35748 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBJC02000015.1 Pseudocitrobacter sp. RIT 415 RIT415_S6_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37214 28 100.0 32 ............................ AAAGATAGTAACCGTTACACGACTTACATTCC 37154 28 100.0 32 ............................ GTCAGCCGCTGCGGCACCTTTACGAATCACGC 37094 28 100.0 32 ............................ AGGGTAACTCTGTGAAAACGTCTCAAAATCCC 37034 28 100.0 32 ............................ TAGCCCGAGCAGGCAACGCGGCGGCGGCTGCG 36974 28 100.0 32 ............................ GTTTGTGCGCCCTGCCTTTGACGCAAAAATAG 36914 28 100.0 32 ............................ AGCACGCGCGCGCAATTATCGGCCACGTCTTT 36854 28 100.0 32 ............................ GAACGCGCTGAGCGCGTCACACAAGAGCAAGG 36794 28 96.4 32 ...........A................ TACGCCCGCTTTGTATGGCGGTACATGATAAG 36734 28 100.0 32 ............................ TTTAGTTAGACATGATCTTGGTGCGGCGGTAA 36674 28 100.0 32 ............................ GCTCGGAACAGCTCGGGCTTGCGCTTCAATAT 36614 28 100.0 31 ............................ GGCCGGATAATATTTCCAGCGCATCCCCACA 36555 28 100.0 32 ............................ CGAATGCGAAAAATCAGAATCAGCATTGGCGA 36495 28 100.0 32 ............................ TCAGTGAATGTGAAGAGTTTAACAACCTGTCA 36435 28 100.0 32 ............................ GTTCCCCGGCATGTTGTCGCACCGCGTTAACC 36375 28 100.0 32 ............................ TATCGGGCTGCGTGACCATGCGGCCCATTCCC 36315 28 100.0 32 ............................ CATGGGTGTGGGTAATTGAGTTCAAACGGATT 36255 28 100.0 32 ............................ AATGCGCGGCGCTGGCCTGAATGGGGCAACTG 36195 28 100.0 32 ............................ AGCAGGGCCCAGGACGGGTAGGAGGCTTTGCG 36135 28 100.0 32 ............................ GGCGAAGCGTTGAGCGCAATTGCCACGCGTAT 36075 28 100.0 32 ............................ ATGTCACTCATTGTGATGCTAATGGCGGCGCT 36015 28 96.4 32 .......A.................... AGCATCGTTTCAAGCGTTGTGCCCTGCTCGGT 35955 28 100.0 32 ............................ AGAACAGGCGAATTATAAAGAGCGTAACGGTG 35895 28 100.0 32 ............................ GTTCGAATATCGGCACCAACGACAACCAAAAG 35835 28 96.4 32 .....................C...... ATCTTCATAATCACCGGAATACGCAGTAAGCC 35775 28 71.4 0 ......C....GG..AA.CA.G...... | ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGGCTACGACCGCGCAATGGGTGCCCGTCCAATGTCCCGCGTGATTCAGGACAACCTGAAAAAACCGCTGGCAAACGAGCTGCTGTTCGGCTCGCTGGTGGATGGTGGCCAGGTGACGGTGGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGTTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCGCATTAATTTCTTTGAGGCGATTGGCGACCGTTGAAATGCCCGATGCGCAAGCTTATCGGGCCTACGGGTGGCCTGGAACGAGTAGGCCGGATAAGGCGTTGTAAGCACATAGTTTCAACCAAAAGCCGGGCTGGAGACAGCCCGGCTTTTTTATGCTCGATGGAATGGTTTTGGAACCCTTTTTTTGGACATGTTTTTAAGTTATTGATTATTAACGCAGGGAATTGGGACGTGAAAAATAGGGTCAAAAGGGAGATTTGAGTGTTAAGTTTAAGGATAACAATATGCTAGAGTGTTTTGGGTTCA # Right flank : TATCGCCAAAGAATTCCGCCGCTGGATGCGGGCATCACTGCCGCCCTGAAAACCCAAATTCCCGCCTTTTTACACTAATTTAGTTAGCAAGTGAATAATCACGACATTGATCAATGTTTGTGTATTGCAACAATGGTTTATTACGCCTAATCAATCTAAAAGCAATAATCACAGGATGTGCTTATGCCTGCTCACTATCTCACGGCCACGGACCTGAAAACCATTCTGCACTCTAAACGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTGCAGGTCAACGGTGGGCGTGTGGAGTATGTGACCAGTGAGGGCAAAGAGTCTTTTTACTGGAATATCCCTATTGCTAACACCACGGCCCTGATGCTTGGCATGGGGACATCGGTCACTCAGGCTGCGATGCGTGAATTCGCCCATGCGGGAGTGATGGTGGGGTTTTGCGGTACGGATGGCACGCCGCTTTATGCTGCAAATGAAGTGGATGTGGATGTCTCCTGGCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //