Array 1 60936-61762 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFNA01000046.1 Campylobacter jejuni strain isolate_W33 NODE_4_length_85808_cov_95.670181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 60936 36 97.2 30 T................................... TGATTTATTAGTAACCCATCAAGTTGGCTT 61002 36 100.0 30 .................................... GCACCTGTTTTTGATTGAACAAAACAACCA 61068 36 100.0 30 .................................... TGCACTGAAATAAATGAGTTTATAGCAAAT 61134 36 100.0 30 .................................... AGAAAAATCAAATTGTGTAACAGGGGTGTT 61200 36 97.2 30 .........T.......................... TTTGCGACTTTCAATCTCTTTAATTGTTTG 61266 36 100.0 30 .................................... AAATTACCTTTTGAATATATAAAAAAAGCA 61332 36 100.0 30 .................................... GCATTGCTTTACTACATAGCCAGTCGTGTA 61398 36 100.0 29 .................................... TTGTCAGTTTAGATATGACAGGAAGTTTT 61463 36 100.0 30 .................................... AAAAGCGATAATCTTGCTTTAGGTAGTTTA 61529 36 100.0 30 .................................... TTTTAGAGAGAGAATACAGGGAATTGGAGA 61595 36 100.0 30 .................................... AATGCTTTCAAAGAAAAAGATTTACCACAC 61661 36 100.0 30 .................................... TAATTATTTAAATCATCTTTCCTATTTCCA 61727 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATTATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAGGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTTGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAGAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCAGAGTTTCAATCCACTAGGGT # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTCTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCTCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //