Array 1 3956660-3956206 **** Predicted by CRISPRDetect 2.4 *** >NC_016887.1 Nocardia cyriacigeorgica GUH-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3956659 28 100.0 33 ............................ CGCCCGGTTGTAGACGTTGGTGTCGGACAGAAT 3956598 28 100.0 33 ............................ CAGCAAGGCGCCCCGACCAACCCGGCCGGGGCG 3956537 28 100.0 33 ............................ CAGCATGAACCTCGACACGGCAGTCCAGGAGTT 3956476 28 100.0 33 ............................ CCCCGACTCACCCAACAAGATCGACGCCGCTGT 3956415 28 96.4 33 ...............C............ CTGAGCATGCTCGAACAACACCAGGTACTCACC 3956354 28 92.9 33 ............G.T............. CATGGTGGCGGTCCGAGTCGAGGCCGAGTTCGG 3956293 27 82.1 32 .T......G.-......T......G... AGGCTGCCGCGCAGCGCGGCGACACTGGCCGG 3956234 28 89.3 0 .T.A....T................... | G [3956213] ========== ====== ====== ====== ============================ ================================= ================== 8 28 95.1 33 GCGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : TCGTGATCGCGGTCGAACATGTCCACGGGTTTGTCCACTACGACTCCATTAATAGAGTTACAGTTTTAAGAACTATACCTCTTAAAGCGAGAAGTTTTGTTCGCCGCGCAGGGGTGTGCCCGGCGGTCACTGCCCGGTGTGGCTGCTGTCGGGGTTCATCCAACGGTCCGGATCGATCCATGCGTGTGGGTCCGCGACTTCCAGGCTGCGCATCGGCGCTGATCGGCTATGCCGTATCAGCCGCTATCCGGGGAACGGATCTGTGCTGTTCCGTGCGCGGCGAATACCCTCACGCTAGACATGTAGCCGGACTCGGTGACGGATGCATGTCGGATCGTCGTCAATGTGGGCAAAGTTGTGCTGGAGGTTGAAACGTCGGTGGGCTGAGACGGCAGGGTGTCGGTCGATGGTTGTCTGGGCTGGATTCGCTGGTGGACTGCGGAGGTGGAAAAGTGAACGAAATTCCCGTTGAGGGTGGGTAGAGTGCCTGGTCAGGAAGT # Right flank : CACCTGCAACGTCCCCCGGATGCGCCGCCACCGCGTGCTTTCCGCGTGTGCGGGGATGATTCTCAGTGACCCAGCGCAGGGTCGGGCGGTCGTGCCCCCGTGTAGGCGGTGATCATCCAGACGACGGACGAAGCTGCGGAGGCAGAACTTCGCGTACGACCCGCATCTGATTAGACGCAACTCGCGCGCATCCGGTTCCACGATTCGACGACCCGTTTGCCGCTTCTACCAGCGGTGGAGGGACGCATACGTTTCGGCTATGTTGGTCCGGCGCACGTTCCGATCCCTGGAAACTCAGGGCCCGACCGCGGGGGGATTCATGACGCTGGGAGTTGAACCCGATCAGATCAAGGCCATGGCGACATCGTGGCGGCAAGAGGCCGACGAGGTCGGCAAGCTGGCATGGTCGGCGATGGCCGAGGCGACCGGAGAGGGCAGTTCGGTACTCGCTGCGGTCCGCGGCGCCGCAGACCCGGCGAAGCAGGCCATGACGTCGATCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3959471-3958680 **** Predicted by CRISPRDetect 2.4 *** >NC_016887.1 Nocardia cyriacigeorgica GUH-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================== ================== 3959470 28 96.4 31 ...........................A GCGAGCCGGTGCAGTAGAACTTGGTGCCGTC 3959411 28 100.0 33 ............................ CGTGGACCTCATCGTCGACAGCAGCGACACACC 3959350 28 100.0 33 ............................ CGAGTCGATCCGGGCTTGTGTTTCGCGAATCCG 3959289 28 100.0 33 ............................ CGACCCGCAAGGTCGTCACCGACAGCGGTGTCG 3959228 28 100.0 33 ............................ CTGGCATCGGTCCTCGACTCGATGGCCGTGTCA 3959167 28 100.0 33 ............................ CAACTGACCGGGGTATGGCTGCGGGCCTCCCGA 3959106 28 100.0 33 ............................ CCTCGACGCCCGCCACGCTGTCATCACCGCCAT 3959045 28 100.0 33 ............................ CTCGCGGCCAGCCGCAGCGAGCGGGAGGCCGAC 3958984 28 100.0 33 ............................ CCTGCTGCCGGACACGATGATCGACGACGTCGA 3958923 28 92.9 33 A...............T........... CAATGTGTGCGATGCTGTGAGGCATGGACCAGC 3958862 27 89.3 33 ........A-....T............. CAAGCCAGACCGCCTGTATATGACATTGCTCGC 3958802 28 92.9 66 .....T......G............... CGCGGTGGTGGGCTGCCCGGACGCCGTCGGTGCGCGCGGGATGAGTCCTCCCATTGAGGGCGAGGG G [3958781] 3958707 28 82.1 0 .......T...T.....C....G..T.. | ========== ====== ====== ====== ============================ ================================================================== ================== 13 28 96.4 36 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : AGGCTTCCGCACCGTCATCGACTGCCTCGCCGCCAGCGCCCCCGACGCCGACCTGGTAGCCGCCGTCGACGCCCGCGGCTTCCTCCTCGGCGCGGGCGTCGCCGCCACCCTCGGCACCGGCGTCATCGCCGTCCGCAAAGCAGGCAAGTTGCCGCCGCCGGTCGTCACCCGCGAATACGACCTCGAATACGGCAAAGCCGCCCTCGAAATCCCCGCCGACGGCGTAGCCCTGACCGGCCGCCGAGTCCTGCTCCTCGACGACGTCCTCGCCACCGGCGGCACCCTCGCCGCCGCCGCCGACCTCTTCACCCAGGCCGGCGCCGAAATCGTGGCGGCCGCGGTGGTGCTGGAGCTGGAATCGCTCGGCGGGCGGAAGCGTCAGGGGAGCTATCCGCTGACGGCGATCGTCACGGTCTGAACACACTTCGCACTGGGCCGCGGAGGCGACGAAAGTGAACGAAATTCCGCCTGCTGGTGGGTAAAGTTCCTGTTCAGGAAGT # Right flank : GAACTGGAGCGTGCCGGAGAAGACCGCGTGTTTCCGGTGTCCGCGGGCATGATCGGCTTCAGTGCGTGAGCGCCCCTGTGCCGTAGCAACCGTCCTATCCGTAGAGCTCCGGCAGCCCGATCAGTGAGATATCGGAGTCCGCCGCTGCATCCGTCGCCTTGCCGTTGAAACCGGCGCCGCTGAACAGGATCAGCCGAGTGCGGCGGGTGTCGTAGCGGCCGGTCTTTTCGATGAGGGTGCGGATATGCCGGAGGCGGTCGATGTGGGCCTGGCCCATGGTGTCGTTCCATTTTGCTTCGCCGATCGCCAGCAGCGGGGGTTTCCCGCCGTCGCTGAGACCGATAACGGCAACGTCGATTTCGTGGTTCGTACGGGTTGCGGGGTCGTGGACGAGGCCATGCCCGACTCGTGCTGGCAGTTCACCGAACAGTTCCGGATCGGCGTGATGCAAGGACCACTCGCGGCAGATCTGTTCGAAGTGCGGTCCCAGCACGTTGCTG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //