Array 1 8830-9451 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018173.1 Calothrix sp. NIES-2098 plasmid plasmid1 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 8830 36 100.0 35 .................................... TTTGAAGATCAAAACCTTTAGGAAACCGCGTTTTC 8901 36 100.0 39 .................................... CAGAGACTCGTGCTTCACTCCAAACACCTTGAATATTTG 8976 36 100.0 39 .................................... CAGAGACTCGTGCTTCACTCCAAACACCTTGAATATTTG 9051 36 100.0 36 .................................... GCTGGGGACACACCTTGTGCAGCTGCTCCGGCACTT 9123 36 100.0 41 .................................... CAGCTATGCTTTGTCCTATCAAAACAAAAACAAAAACAAAA 9200 36 100.0 35 .................................... TTCTTCTATTGTTCCCTTGGCATTAATCACATTAA 9271 36 94.4 37 ..............C......T.............. AGGAGAATCTCAGCCACAAGCTTATCGACCTCCCAAG 9344 36 88.9 36 ...T....C.....CA.................... CCGAAACCGTCTCGCTTGGCTTGGATCATCGCAAGA 9416 36 83.3 0 ...T..A...G....A...............AG... | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 96.3 37 CTTGCCGATCACATTGCCCCGCAAGGGGATGGAAAC # Left flank : GCAAGATATATCAATCTTTGGCGGTTGATACAGTGTCCATTTAGATAATCTTCATAATTTTGGCTGACTTGATTGTCACTTTGAATACTTCCCATCCTTTCCAAGCGAGTAAGCAAAAAGTAAAAAAAATTTCTTCGTAATGCTGGAATCGGGTGTAGTGAGTTATTTTCAGAGCCATTACCTCGCAACACTTCCTGGGCGGTCGCACCTGTGTATCAATAATTTGCAGTAATAATATTAACTTATTTATTAAGTTCTTGACAGATTTAAGTATTGTATTTTACTTTTAAGCCTAAGTGTTGAGTCTCATCGACACCACTAAGCCGAACCTTGAAAACCTCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGTAAAGTTTCCAAGCTGTGAAGAGTTAAATTTATTGACAATTTTCAGTATTTGTTGACACTAATAAAACTGGTGTCGAATTGGGTATCTGAAATCTTTGCTCAGTAAGCTTTCTAGAAGTGAACT # Right flank : CTCTTAACTAAATATGCCTTAGCGAGCAACTACAGCAAGTCTACAAGCTGTATACAGGATGCACACATTTACCAAACTAAAGCTTAGTACCAGCTTCACAGATTGCGATCGCGTGGAGCGCAGTGCCAGAGGCAATCACAGTTCATCACATTCAGCCGATCGCCTAAGCAATAGGTTTCTTACTATATTTCTCAAATAAATCATTTAGAGCCTCAGCGAGTAAGGCTTGTACAGTTGTATCTTGCTCCAAAACCAGTTGTCTCAATTGTTTTAATACTGCTGGGTCAAAATGTCCGGCGACCGCCCCCTAGTCAAAAGACTAATTTTCTGTAAATGTATAAACACGATTTCCTTTATTTACAGAAATGATTATTTCAGTACAGAACCAAAAAGGGGGCGTGGGCAAGACAACGTTGGCAATTCACATCAGTCATGGGCTGGTGTTGAAAGGTCATAGTGTATTGCTGGTGGATGCAGATCCGCAAGGTTCATCAAGAGAT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCCGATCACATTGCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 140048-140228 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 140048 34 100.0 38 .................................. AACGCCGCTGAGTAGATAAAACACTTCGCTTGCTCCAT 140120 34 100.0 41 .................................. AACGTCGTAATAAACGCCACGCACCCATAAACGCGATCGCA 140195 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================= ================== 3 34 100.0 40 GTTTCAAACAACTATTACCCCGCAAGGGGATTGA # Left flank : CATATTCCAGGGTAGCAAATGGGGAATCAAGAGTCAATCATAATAAAGGCAGAAATTGTTCTCTATCTGTTGTGCGATCGCATTTATGCAAAAAATATTTTGCAAATAAGCAGGTGATAGCAACTTCAGAGTTCCTTGAAGTAACATCAGGGTTTCCATTTCATTGTTTCGCGTACCCGGAATTAACTTCAGGGTTCCTTGAATGAACATCAGGGTTCCCGTTTCCGTGTTTCGCGCAGATTGAAATACATCTCGACAATAATTGATGAAGATCTTATGATTAGTTACTAGCTTGATGTTTGGCGAATCAAAGCGGGGGCAAAAACCCTAGAGGATATGCCAAAATCGCCAGAACCTTGACAAAGCAATAATTATAGCGTTTCAGAGATTTGGGAAGATGTAAAATAATTGCAATAAGGTGGGCTGAAAATGACCATAATTTTCGATCTGTCAAATGTCTTCCCAGGAAGCTTGCTATTGTTAAGTTTCAGAACCCAGCT # Right flank : AGAGATGTAAGTAACCCAGCGAAAATCAACCAAACTATGTTACCAAAAGTAACGACGCTGGCAACCCTTACCAGTGACAACCCTAGCCAATTAACTTTAATTACCCGACCTATTTAATGTTAATGCGCGTTTGAATTGTGCAGCCAAGCTTGAAACAGAGATTCTAAAATACTGTCCCTCGCTGAGTTACTCAATTCAGGATGTAACCACTTTTCAACTCTGAGAATGTAATAACCAAGTTTGGTAGGAATTGGCCCTATTACTTGTCCTGCTACTGCATCGGTGATAGCTTGGGCAATTTCTGGCATCAATTCTACTAGCAAACGCACGCCAACAAAATCGCTATTTTCTGGAGATGGTTGACCTTGAGAATACTCTACGGCTAGGGCGGCAAAAGAAGCATTTTCTTTTTGAATTAAATGAACAATTTTTAAGGCATCAGATAAGTCAGTTACTAAAATCTGAGATAGTATAACTCGTCGATAGCGATCGCAGTTATC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACAACTATTACCCCGCAAGGGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 744885-746239 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 744885 36 100.0 33 .................................... AAGGTTTTTGCCCTATCGGTCGCGCGTCGCTCC 744954 36 100.0 39 .................................... ACTTGTCAAATGTCCATTCCTGAACTTCATCAGAAAAAG 745029 36 100.0 38 .................................... CAAATCTCGCGTTGGCGGGTACGATCACACTAATATGG 745103 36 100.0 36 .................................... CTACTGCTGAAGCGATTGGAGCTAATGCACTAAAAG 745175 36 100.0 43 .................................... TGTATTGAATGCCCATTGCCAGTTGACCGATATATTAACGCCA 745254 36 100.0 36 .................................... TTACTTGCTACTTTGTTTTAGATATGACTCATAATC 745326 36 100.0 39 .................................... ATAGAAGAGTAGTATGCTTCCAATTGATTACGATAGCTA 745401 36 100.0 31 .................................... TTTTCTGTAAAAGAACAAACTAAAGATAAAG 745468 36 100.0 40 .................................... TAGGACAAGCGTTAGATGATCTTAATAAGGCAGCTAAAGG 745544 36 100.0 36 .................................... GTTTAAAGGTGAGGCTTGTTCTCAGGCATTTTGGGA 745616 36 100.0 35 .................................... TTATTTCCTGAATCAAAACTTGATTACCTTTGTAT 745687 36 100.0 35 .................................... GCTCAGGATGGGAGCGTAGCTAACCACTTAGCCCA 745758 36 97.2 38 ...............A.................... TTCATCAGTAGGTGCAGATGCACTATTAATCCAAAGTA 745832 36 100.0 37 .................................... TTCACAATACTGCTACGTTTAAAACCATCGTTACCTT 745905 36 100.0 37 .................................... ATTAATTGAGAACACTGGTATTGATTCGATGCTAACT 745978 36 97.2 41 .....................T.............. AATATTTTCTCTATCACTCTAGAGTTGAATCGGATACCAGA 746055 36 100.0 40 .................................... GTTTGAAAGTTAAAACTTCCTGTTGGATGTTGTTCAAAAC 746131 36 97.2 37 .....................T.............. TCCGCTGGCTAATCCATTTCACCCAAGGGGTCAAGAA 746204 36 97.2 0 ...............T.................... | ========== ====== ====== ====== ==================================== =========================================== ================== 19 36 99.4 37 GTTACGCTTACACTTCCCCCGCAAGGGGATGGAAAC # Left flank : TTACACGTTCTAATAATTACTATCTGGAAACTCACAAAAAAGCAAGATACTTATTTTACGCTGCTACTTAAATTTGAGCGTCACAACACAGCAAAATCAGGATATTAGCGCTTTTATTAGTTAATTTGTCACTTTTTAATTCTTCACAATCGCTGGGTTGACTAGCTCAGATAATTTAGCTAAGTTATCTTTGTTGCAAAATTTGAGCTAGCTATTTAAGTGCTTTCTCTATAGTTCCAAAACCAGAACCTTGAAAATTCAATAAATACAGTAGTTTTCTTGGGTAGGTTTCCATACTACCCAGGAATAAAAAATCGATTATGCGGCCGATTCGGCAAATCGCTGAAAAGCTTATTCTTTCGTTTAATCGGCCGTTGCTTTATCCTGTAAGGCTTTTAGAGATTTTTGCTTTCTATTTTTATGACTGGAAAGAGACAAAATTCGTATCCGTCGCAAACCGCCTCTAGAATCTATGCAGGCTAAGGCTTCCAAATCGAGGG # Right flank : CGCCTCACGGAAAGTGACGCAGCCTAAGTTATCCATCGGATATCTAACTTATTCCCCGCGAGGGGATGAATGAGGCTATGAGTTACACGGCTATAAATTATTTAATAATCTCTTTCAGCAACAAAAATAAATCAGCAAATAATCTCATATTTAGTTAAACTACGTCTTTTAGGAGAATTAGAAGGGCATTAACAATTCAATCAGCAAACAGCACGCTGTATTGAATCAACAGAAAATGAAACAGTATGGCATACGAAGTAGAATATACAGACGAGTTCGAGCAGTGGTGGCTAACACTTGATGCAAAAACGCAAGTCTCGATTGATGCAGCTGTCACCTTACTTACAGAAAAGGGGCCTAACCTTCCCTTTCCTTAAAGTTCTGGTGTAAAAGGTTCTCGTTACCAACATATGCGAGAACTTCGAGTACAACATCAAGGAAACCCATATCGCATTTTGTATGCTTTTGATCCTCGTAGAGTTGCGATACTCCTTTTAGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGCTTACACTTCCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1028596-1029234 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1028596 37 100.0 35 ..................................... ATTTAACTTTTGATATTTCAACAGCGATCGCTTTG 1028668 37 100.0 40 ..................................... ATTCCTCTGGTTTTGAGTTGGGCGATCGCCTGGTGGTAGC 1028745 37 100.0 39 ..................................... ATTGAACTGATTCAAGTATCATTTTATTTTGCAACTTTG 1028821 37 100.0 37 ..................................... TTGATAATTCGTTCAGCAACACCACCAGGTTTAGTAA 1028895 37 100.0 35 ..................................... TAATACGTCTGACGTTTAAAAGTCACTTTTATTTG 1028967 37 100.0 45 ..................................... GTGTTGTCAACGGCGGTCTGGACGTCCGCAGGGACTGTCCCGTTA 1029049 37 100.0 36 ..................................... GCGATCGCCTAAAAGTTACCTATTTTTTCGGTAGAA 1029122 37 100.0 39 ..................................... CTAAACATCCCCTCGGAGACATCTTTCATTACCTGGAGG 1029198 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================= ================== 9 37 99.7 38 GTTTCCACGAATTATTACCCCGCAAGGGGATTGAAAC # Left flank : TACCCGATAAACCAATTGGCCCTTGGCTCGGTGCTGATAGTTAAATATTCTACGTAAATTCATGATCGCTACTCAGTGTTGCGCGGTAATAGGAAAAACACACGCAATTAGGGATCTTCTATATATATAGCTTCAGGGGATATAGTGGAGATACGCGAGATTATAGAAAGCTATGCTAAACAGTTTTTCCAGTAAAATCGTCATTGGTAGCCACTAGCACTAAGAAAAACTACATAATTTTTGATAAAAACTCGACAAGACCTGGCAGTAGCTTTATGATGAATTTAACAACTTGATGTTTGGCAAGTCGAAGTGAGGGCGAAAACCCTAGGGTATCTGCCAAAATCGCCAGAACCTTGATAAGTAAATAATTCCAGCGTTTCAAAAATTTGGGGAAATGCAAATAATTTGCAATAAGGTAGGCTGAAAATGATTAAAATTTTCGATCTGTCAAACCTCTTCCCAGAAAGCTTGCTCTGGTTGAGTTTCAATACCGAGCA # Right flank : TACACACTAGGCGATCGCTGATGCCGCAATGATTGAAAATCATAGTTCCCACGGGGTAATTAGCCGGACATCATCATAATTTGTTTTACCAAATATAGGGTAATAGTTTATACCTAACTTTTTCTGTATAGGTATCATAGCCTTTTAGTTCTTGCTTCAAAAATTGCTCCTCAAATTGAATCCGTATAACCAGCGTCATAATTGGAACGATCGCTAGCAGAGCCGCCGCGTAGGATTCTAACCATAGGGACATACCAACCATCGTCAAAACTGCTCCTGCATACATGGGATGCCGCACAACGCTGTAAACTCCTGTATCAATCACCCTTTGTTGTCGGTCTGCCTGATGTTTTACCGCAGTTGCCGCAAAGGTATTTACTTTAAAGGATAGGGAGATAATCAACCAACCAATGATAAACATGAGCAATCCTAGTACTGAAGCGAACGCACTCGGTTCAGCAAACAAATGAAGTCGGAACACATCCAGGGGAATGAAAGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACGAATTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 1362624-1362234 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1362623 35 94.3 36 ...GT.............................. TATGGGTTGGGTGCATATCGTCTCATGGCCTGCACA 1362552 35 94.3 35 ........T..T....................... TAGATGAAAATCGTGGGGTTTTCATTTTTACTAAA 1362482 35 100.0 37 ................................... TGATTTTGATAGTTTTCGCTTTCATTTTAACATTCAA 1362410 35 100.0 35 ................................... TACATTGCGTACACCAGCAACCTCTTTGCAATCGC 1362340 35 100.0 37 ................................... GTTTTAATAGTGCTTCAAGCTTTGTCTTACACTGATT 1362268 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 6 35 98.1 36 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Left flank : CCAATTAACGAAAACCTTGATACAGATAGATTTCTCTTAGGGGTATGGCAATACCCACCTGTGTCAACTTAAGCTGAAAGCTAGATCGGGCAAGCGTTGTACAAATCCTCCACGCCCTCATCCCCTAACCCCTTCTCCCACAGGAGAAGGGGAATTTAATCTCTATCTCCCCTCTCCTGCGGGCTACGGTGTACACACAAGTACTATCTGTAAGGGTTTCAGGCATTATAGACCCTTTAAATTGTCATTACGAGTGCAGCGAAGCGGAACGAAGTAATCGCAAAAACCACGGGATTATGCGATTGCTTCGTCGTTCCTCCTCTCTGCGAGACGCTACGCGAACGCAATGACAAGCTTCCAGAGCGATCGCACAACCTAAAACTAGATGAACAAACCAAGTACTAGGGGGAATTTTAAGACTTGTGTGTACACGGTAGCCTTAAAAAAGCGGGAATTAATTTAAAACTCTATAGTACAGAGTGCGGTGAAATGAGTTTATC # Right flank : CCTACCCTTTTAGAACGCTTATCCAGAGAGGGTTACAGATAGCCATTTCTGAGGGGGGTCTAATTTACCTATCAATAAGCTCAAATTATTGAGAATATAAGGCTATTAGACCATGCTCAAACGCTTACCCAGCAAGCTATCTGAGGGGGTCAACGAAAGAATCAGGGTTTCAGCCTTTGCCTGACCCCCTCAGATGCTTATCATTAAGCAACTAAGTTATAAGTTTGCTAAATAATTCTGAGTAAATGGAAATACTCGATTTAGATGTTATTGAATTTTCGTGGTTCAGTAATACTTTAAAATAGATAGTATGAAAACACACTATAAAAGTCAACCGACTTCATAATTGTTCACTACAGAAATCCATGACTTTACAGATGTTTAGTTAGTAGTTTGACATCATTTACCCCTCACGGGGATGGAAAAGTTGAAAGTAGTTGTTGATGCGATCGCCTCCATTGACGATGAACAGATGCAAGTGCGATCGCAATGTGCTAGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 5 2730466-2730194 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 2730465 36 91.7 37 ......C...........T..C.............. ATTTCATATGCCTCGGTGCGGGGCATAATTGCCGAAG 2730392 36 100.0 42 .................................... AGTCAAGGCAAAGAACTTTATATTATTGCAGGGCCTTTTGGG 2730314 36 86.1 49 .......C.ACC.........C.............. ATTGGCACAAGCCGCCCCACAGTTGTGTAGTGGCTGTTTCCTCCAGGTG 2730229 36 91.7 0 ...................T.C..........C... | ========== ====== ====== ====== ==================================== ================================================= ================== 4 36 92.4 43 TTTCCATAACTAATTTCCCCGTAAGGGGACTGAAAC # Left flank : AACACAGATTAGGTTCGCCTTGGACAGCAGAAGATGAAAAATTAGCCGAAGAACAACGACTGCAAAGAATTTTGGCAGATTTGCTTTCTCGTGTATCCGAAAAAGTTTATTTGTGCCATAGCGATTTAGCTGTCAATGGACAAGAGCAGTTAGGGCCGCTGTTACATTTAGTAAATGCTTGTGTGCCAATTAATTCTGAGGCTGTTGTGAATTGAGTGGCTTTTCAGCTAGATGTAAAGGTTGAAACACATCGACATAAGTCGATGAGTATCTTATGATTATTCGCTAACCCGAATTTTTCGCGAACCAAAGTGGGGGCAAAAATACCGGGAGGTTCGCGAAAATCGCCAGAACCTTGACAAGTAAATAGTTCTAGCATTTGCTGAATCAGGAAAGTTACAAATTATTTGCAATAAGGTCGGCTGAAAATGACCAAAATTTCCGGTTCACGAAAACCCTTCCCAGGAAGCTTGCTCTGCTTAAGTTTCAGAACCGAGGTA # Right flank : AGGTAGTCGGCACAGCTTCCTTCTATCTTTATTTACTCCTGCCCTCTTGCCTCAAAACCTCCGCAAAAAGATAACGGGAAAAGTCAGATGCTTTTAGCTTCTAGGAGTGGTATGAACCATCTCCAGCCGAGTTGGAGCGATCGCTTGGGCACTAGTATTATGTGCTATGCGCCATGCCCGTAAACGAGTACTTTACTAAAACTTTATTAATTAGTGCTTTTTATTCATAAAGAATTTATTTAATCTAAGTTTCTTTACTTAAATATTTATTACATTAAAACCTAGGGATAACACTTAGGGTAACAAAAAATTATAGTATTCACTCTGATACATTGGCTTTGTCTAGGAAAACTGTTAAGTAAATCATATATAAGACTTGCATATTAATAGAGGCTGGATTATGGTTTTGGCAATTATCAATGTTTAAGTTAAATAGTACGCAATCTAAAATGAGATTTTGTATGTCAAAATTTGCATCTTTTCGATACAATATGATGCTT # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:-0.04, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCATAACTAATTTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3086392-3086944 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3086392 37 100.0 36 ..................................... TTGAGGCATACGGGAGTAATGGCGGGTTGATGTTCC 3086465 37 100.0 35 ..................................... TCTCGCAGCTGCTACAACAGAAAATTGGCACAATA 3086537 37 100.0 43 ..................................... AATCATTCGCTGCTTGGCAATTTCCTTCTTGAATACCACAGCA 3086617 37 100.0 36 ..................................... TTAGCTCTATGCACTTCACGATCGCCTATCCAAACA 3086690 37 100.0 36 ..................................... CGGCATTCTTGCGAGGGCGACCTCGTTTTTTAGTTG 3086763 37 97.3 35 ............................A........ TTCACTTCGTGCTGTTTTTTGCCTTTCGCACCTTT 3086835 37 89.2 36 .....C.TT...T........................ ATACCGTTAAGCCCAGTGCTGGGTTTATCTAAAACT 3086908 37 89.2 0 .....C.T.....................G..T.... | ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 97.0 37 GTTTCTACCAACCATTTCCCCGCAAGGGGACTGAAAC # Left flank : TTCTCTGGCCTGATTTCGATCGAGAAGCATTTCATCAGGCTTTGTTGAGTTACCAAAAACGCGATCGCCGTTTCGGTCAAGTCAAACCTTTACTCTCAGCCTAACACCTAAGTTTCTACCTGGGTGCGATCGCTGGCTGGAATCAAACACCATCATTCCTAAAAGTATCAACAATTAAAAGAGCGATCGCAAACTTGAGGAATAATTTCAGATTGATTTTTGCTAAGTTTACTAAATATAACGATAAACAACTCGACATCAGCCGATGAGTATCTTATGATTATTCGCTAACCGCATTTTTCGCGAACCGAAGTGAGGGCAAAAATACCGAGAGGTTCGCGAAAATCGCCAGAACCTTGACAAGTAAATAGTTCTAGCGTTTGGTAAATCAGGGAAGTTGCAAATAATTTGCAATAAGGTCGGCTGAAAATGACCAAAATTTTCGGTTCACGAAAACCCTTCCCAGGAAGCTTGCTCTGCTTAAGTTTCAGAACCGAGCA # Right flank : CTCAAAGCTAATTTGCATTTTTTTGGGCATGGTTTTAAGTCAATAAAGTTCAGTTAGGCTGAGATGCAATATTTCGTAGGGGCACGGCACCGATAAGATTACTGTATATACCAAAAAATTGTGGACGCCATGCCCCTACATCCCTCTTAACTTTCCCCGGAAGGGGACTACAACCAACATCAAAAGCAAATTTCAACCCAGTATCAATTTGCAATTGTGAAGATAAGTCGGATTCGTTACGATGACATAAGCAAGCGATGCTCTGCTTACAGGAGAAGCGTCTGTTAAAGGTCAAAGAAACACTCATGACTACTAAAAATAATTTGCAAGGCGATATAGATAACGCTATTGGACAATTTCATCAACAAGACGAAGAAATATTCCAGTGGACAAAGCAGTGGTATCCAGTAGCAGTTGTAGATTTCTTAGATCCATCTCGCCCACACGCAGTCCAGTTACTAGGAAAGGATCTTGTTGTGTGGCGAGATAATTTGGGCAAG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTACCAACCATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 3740250-3740506 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3740250 36 83.3 36 ............G..TT...T..G.A.......... CGCGTCATGCCTCCAAGGCGTATAAACACAAGAAAA CT,A [3740268,3740271] 3740325 36 97.2 38 ....................A............... TTTGACTTCAGCATGGGCACGAAGAAGATAAGAGTATG 3740399 36 100.0 36 .................................... CCTGGTCGGTTGCCAGCGCGGAGCATTTTTAGCAAT 3740471 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 95.1 37 CTTTCAACCCACCACCGAGCGGGAGGGTTATTGAAA # Left flank : AGTTCCCTATTCTCCATTTGTCCATTAAATAATTGTTGTCAGTTTTAAAGAATTATTGTCCAATTTGATGTAGTTAGAGGACATAAGTTACGTAATCTCCTGCCTTTCAGCCATCAATCCAGTTTTAAAGAATTATTGTCCAGAGTTGAAACCAGTTTTAAAGAATTATTGTCCAAAATAAGAGGTTAGTTTTTGCCAGATATATGAAATCAAATTTAGGACTTTACAGCAAATCTAAGACTTTTTAATTACAAATTATTAAATTGCCTCACATTATCCCAGAGCTTTGTATCGCTCCGGGGTATATATCTGGAGCAGTTTATTTTCGGTCTAATTATAAAAATTAATTTCTGCTTTTGCAGCTTTCACTGAAGCCACTGTTTTGTTACCTTAAAACGCTGCTTGCATTTTTTGGTGCGATCGCAGCGCTCCTTTCAAACCACCCTAGTAAATAATTCTACTATAGTAAAGATGTAAAAGTTAAACATCAAACATTAGTT # Right flank : ACCAGCCCTTTCAACGCGTTCATTTGTACTAGATTTTCTGCAAACAATACACGCCCCCTCAACCCTTACACAATCAAACTCACGCTCAATTCTGCACAAAAATGCTCGATTCAAGAGGCAATAAATTGACCGTTTTTGGATGTGCGATCGCATAATCAAGTTCGATAGCTTAGAAGCATCATTTGTTGCCCCAGTCTGGGAGCGGGTTTCAGCCTTTGATTGAGTAGTTCATTTGTTCGTGTTGAAAGGGCTGGGTGATTGAAACCCAGGATTGAGTTGGCAGAAGAAGATCCAAATTGGCTGCTTTCAACCCACCACCGAGCGGGAGGGTTATTGAAACTCCTTGTCTCCTTAATGGTTTGAGGTGTTTTTCACTTTCAACCCACCACCCAGTAGGAAGGTTATTGAAACCTTACCCTCTAAAATGCTTATCTCTACTGCCTTGAGCAGATAATTTTAACAAGTCTACTTAAAAGCTAATTTTTTACACACACAAAATA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCACCGAGCGGGAGGGTTATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : NA // Array 8 3854450-3854048 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 3854449 35 97.1 37 .........................T......... CTCTGCTACCTCAGAAATTGTTGATTACATGACTCAA 3854377 35 97.1 42 .........................T......... TAATCTTGCTTATGCTGTTCAAAGAGCAAGTAACATCTTTAG 3854300 35 100.0 38 ................................... TTCTAAAGTCGTTGGAGTTGTATCTGGATTTGTTTTAA 3854227 35 100.0 38 ................................... TAAATGTTTTTGAAAATCTGATTGAAAGTTTGAAATCA 3854154 35 100.0 37 ................................... TATTGATGTTCGGGGTGGCAACACTACGAGTACTTAC 3854082 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 6 35 99.0 39 GTTTCCATCCCCGTGAGGGGTAATGATTTGAAAAC # Left flank : GCTGCGCCGTTTCGGTATCCGACAACTCGTGTTCGTCGATTTTGAGGACAACATATTTCGAGCCGTCCTCATTACCAAGTCGCCAATTGGAACCGTAGAGGTGTTCTAGCAGTTGCTCGCGTCGTTCAGGAACAAGCGTACCATTTTCCAGCCACTTATCTGGGATGCGATACCAATTTGTGAACGTCTTTGAATTCTCTGGATCGAAAATGTAGCCGCTTAGATAGTCATCCCAAAAGCTCAGTGTGTCGGTAATGGTCAAGCGCAGGTATCTCACACTTCTGTACCCTCCTCAATGCTTTTAAGGTCTAGCGGCGAAATCATCTCATGCTGCATTACTGGGGAGCGATCGCTAACATTTTGCGGTAGTTCGGATAAGTGAATTTGCTCATCCTTATCGCTACCTTTCTACTAATCTAACCTCAAAAAGCTGGATCTGAAGGTTTGTCTTGTGGCGCGATCGCACTAATTCTTGCAGAGTACGGTAGCTGTGGATGGTC # Right flank : CCTACCCTTTGAGAAGCCTTATGCAGAAAGGGTTACAAATACCTATTTTAGAGGGGGGTCTAATTTCCCTGTCAATAAGCGTCAGATTATTGAGAATTTTAGGCTAGTAGACCAGGCTCAAAAGGTTACTGTGCAAGCTTTTCGCGGGGGTCAACGCAAGAATTAGGGTTTTGGTGATCGCCTGACCCCCGCGAAAAATTTACGTATACAAAGTCAAAAAAACTACTTTGTGATTTTTTGGGAAACAGTATATTAAGTTTTCAAGGTTCTCTAATTTAAAATAGAAGTATAACAAAGTACTTAAGCTTTTGAAAGTGGCAAACATTAACTTTTCTATCAAGTCCACGCTCAGGTTGTTGATGGCTTGATGGGCGATGTCTACGACGGCTATGCTTACGCGCAATTTTGAGCCAACAGATAATATGTGCGATTGTTGTTTAACAAACTAAGCACTTTGTTAAACAAGGCAAAGACTTTCTTTAACAAGGTAAACACTTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATGATTTGAAAAC # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAATGTTTTGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 9 4961297-4962048 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 4961297 36 100.0 34 .................................... TTTGGACTGTGTGACCCACTTATCTTTTCCATTA 4961367 36 100.0 35 .................................... CAGAAGTCGTTGCTTGTGCAGCAATCACGACTTGT 4961438 36 100.0 38 .................................... GTTTGCATCGAATTATCCGGCATAATGAATAAATTATA 4961512 36 100.0 33 .................................... GTCTCGATTATCAATTTAAGTGTTTGGTACAAA 4961581 36 100.0 33 .................................... CTTAGTCACCTCACCGTGTCTACTAAACGGTGA 4961650 36 100.0 34 .................................... TCGCTGCTGATACCAGAAGATAAGGTAATGCAAA 4961720 36 100.0 39 .................................... GAGTCATTGTTGGCAACCGGTAATTTAAATGTTACTCCA 4961795 36 100.0 40 .................................... ACCCATGAGTAGTCTGCACATTCTGCGGCGGTGGTGCCGA 4961871 36 100.0 34 .................................... GCCTGGCTGGAACTTTACAGCGTTATTGCTGCTG 4961941 36 100.0 36 .................................... TCATCTGCGTATACGTCAAGCAGCAGATGTACTCGA 4962013 36 91.7 0 ....G.....G....A.................... | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 99.2 36 CTTTCCGATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : GAATGTTGCGAAGGTCAAAAGACATGGCTATCGCTCGTAGACGAATAATTATATGATAATTTTTTGAAAATTATTTGTCTAATCGGTTGGTGAATGTACCCGTAGCGATCGCACATCTTGTCTGTTGGCTCAAAATTGCGCGCTCGCCTAACTAGCCGTCAAAACTTCTTGGTGTAGAGATGCGATCGCCCAAATTTACTTAGCTGTTTGTAACAAATGTGTAATAAATTTGACTATAAAGTGTAAAAGTTATATTTTAGAAATATCCTAATGTCGCTCAATCGACACCACTCGTCCGAACCTTGAAAACCGCATAACTACTCTTCGAGAAGCCGCGTGCGCGTCTACGTTGACTGGTGTCGATTACTTACACAGCAAAGTTTCCTAGCTGTAAAAGACAGGAATTATTGAGAATTTTTTGGAGGTTATTGACACTAGAAAAAGTGGTGTCGATTAGGGGGTCTTAAACCCTCTCCCAGCAAGACTTCCAGATATGAACT # Right flank : CATAACTGAAAACAAGTCTTTCTCTTACGAGATTGATCCTTTCCAATGAGAAATTCAAACCGAAGTGCGATCGCCTGGTCATGAGTAAGAGACTATTTTAGAAGCCAACCATTTACTTGATTCAGAAAGTAATGAAGCTCTACTACATTCCTACGACACGAGCAGTACGTCCTCGGTGGCTCCTAGAAGAAATCGGAGTTCCCTATGAATTGATACAGGTTGACATGAGCATGACTCAGGAGCCAGAGTATAAAAAATTGCACCCACATGGAAAAGTACCAATTCTCATAGATGGGGAAGTGACAATTTTTGAATCTGCTGCTATCTGTGCTTATCTTGCTGATAAATATCAGACAATGGGTTTTGCTCCAGCAATAGACAGTCCGGAGCGTGGCTATTACTATCAGTGGCTATTTTACGCTACAGCTACATTAGAACCACCTGTAGAACATTTTATGTTTGATGTTCTACCTAATCTGCCAGAAAAAATACTACCAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 10 5283221-5282896 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 5283220 37 100.0 36 ..................................... TGGCTAGCGATGCCTACTATAACCGATTAAGTTTTC 5283147 37 100.0 35 ..................................... TTATGATTAACCACTGTTAACTGCCAATGATCATA 5283075 37 97.3 35 ............................A........ GTCACTACTCTTTGACTAGCAGCCAAGTATTTATC 5283003 37 89.2 35 ......G.A.A...................C...... GGAAGTAGCACGTCGCGTTCCTTGTCGCCTTTCCC 5282931 36 83.8 0 ...A...T..A...................C.-...T | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 94.1 36 GTTTCCACTAGCTATTACCCCGCAAGGGGATTGAAAC # Left flank : ATCACTACCTGATGGTGTGGGTTATTGTCAAGCAAATTTACCATAAGAAATATTTCCTTGTGTTACGGCTATTGTAACTATTCTTAATAAATATGTATCAAACTTGGCAAAACTCTTTCTGTTCACCTTGCACAGATTAAAAGATGATAAAAGTGAGCAAAGTTACATTTTTATGTAATTAAAGGTGAAGAAACCACGCCGTTACATAATGTATATGTCGTGTTCTGATTTCAAATTGGTATAATTTACTCCTCGACAAAAGTCGATGAGCATTTTATGATGATGCTATTAACTGAATGTTTGACAAATCGAAGTGAGGACAAAAACCTCAGGGATTCGTCAAAATCGCCAGAACCTTGACAAATCAATAAGTCCAGCGTTTGATAAATTTGGGAAGATGCCAATTATTAGCAATAAGGTCGGCTGAAAATGACCAAAATTTTCGGTTCGTCAAAACCCTTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGCACCGAGCT # Right flank : AGACGATCGACACGACAGGAAATTGAGAAGATTCAGCGTTTCCGCTAAACATTTCAATAAGATAATTCTTCTCGCAGCAAAGCCCGAAACCCCGCCTGTTGAAAATGTTCGTTAGCAGTTAAAGCTTCAGAAATTCCGCTATATTGCATGACAATAAAAGATACGCAATCAATAAACCGCCATTCTTTCTCAGAGCGATCGCAATATAACTGAAAAGCTCTGTCATAAAGTTCTTGAGATAGAGGTACAATTTCTACCTTAGAGTCTGCTGCTAGGGCATTTAATAACGTGACTGCCCCATGACGTAAGGGTTGTTTCGCTAAAATATTACCAATTTCTAACATTACGGCTTGTGTAGTTACTAACCGCGTGCCTGCTGTTTCTAAAAGTTCTGCTAAGTGGACAGCGCGCCGATGCAAGTTATCTTGCGGTGCAGCTAAAGCGATCGCAAATGTTGTATCAAGAAAGACTTCAGACCTCATGCTGAATTTTTAGACCCT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACTAGCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 11 7417847-7416249 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 7417846 36 100.0 45 .................................... AAGAGCCGCAGCGAAACCATCAAGCAAGTTCGGATTGCCATGTGG 7417765 36 100.0 37 .................................... ACATCATCTGATAAGACATGACAACTAGCTCTATGCT 7417692 36 100.0 35 .................................... GGAATTGAAACGTTAGTCTTAACTTTGACTAACTT 7417621 36 100.0 37 .................................... TGCAATCTTTGATAGACTTACTCCCTTCTCTTTGAGG 7417548 36 100.0 40 .................................... CTTTTTCAACTTCTGCTAAGTTTGATTGACACCTAGAAAG 7417472 36 100.0 36 .................................... AATGTCGAAAAACCTTTGTGCGCCGTATTGACTAAA 7417400 36 100.0 43 .................................... TTCAATAGGAATATGCATTTTGGCATGGAAAATAAACAGAGAA 7417321 36 100.0 39 .................................... TCCTGCCCACAGTGCGATCGTGCTCAGTGTGGAAGCGAT 7417246 36 100.0 37 .................................... CAAAAGTAGCCGAACCTTGGCGCAAGTTATTCCCCAG 7417173 36 100.0 34 .................................... GCGTTTTGTAGGGCGATCGGGTCTACTCTGTAAC 7417103 36 100.0 34 .................................... ACATTTGGAACGAGATTAAACGCGCGAATAACAA 7417033 36 100.0 44 .................................... AACTTGCCGAGCTTCAGCGAGATCTGGCCCGAGCCACAGGTCGG 7416953 36 97.2 39 ....................C............... CAGTTAGCCAGGATAATGTCATAATGCGCTCCTAGTCGT 7416878 36 94.4 42 ....................C.T............. CTAGTAAATACTGCTTTTATCCTCAAGTGGGATGATATCGAA 7416800 36 94.4 42 ....................C.T............. GTTACCATGTACGGCGATCGCAACTCATAGATTGTCCATTGA 7416722 36 94.4 38 ................A...C............... TTATCGCTAAAAGTTACAACGGCATACTCTGTAATTAA 7416648 36 97.2 35 ....................C............... TAGTTATTTCAGTTAGTGACCAGTTATTCCAACAA 7416577 36 94.4 40 ........C...........C............... TCCCCATAATTTGCTGGATCAAAAATCCAAAGGGAATGGC 7416501 36 97.2 38 ....................C............... TTCATTATTATGGAATCCTTTGAAAACTGGTTTCAACA 7416427 36 97.2 35 ....................C............... TTGTGCGGTTATCAATTCACCGAGATTATTCATGA 7416356 36 94.4 36 ....................C..............T TGGAAGTGATAGGTTCCATCAACTAACTGTAATCTG 7416284 36 91.7 0 .........................C.GT....... | ========== ====== ====== ====== ==================================== ============================================= ================== 22 36 97.8 38 GTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : ACAGATTTATCAGCCTTATCTGATTCGCTAATTCTTATGCTTTTGTATGTGGTTGCTTATGATATTCCTTGCGATAAGCGGCGTAAAAAAGTCTCAGATTTGTTGGAAGGCTATGGAATTCGAGTACAGTACAGTGTTTTTGAATGTGTGTTAACTACTTCACAATATAATGAGTTGCATCAGCGATTGCGGAAGAAAGTAAAGTTATCGGAGGATAAAATACGTTTTTATCCTTTATCAGGTCATACTTTAAATCAAATTCAAGTTTGGGGTGGGCCTCCAGTCACAGAAATACCTGGTTCAACCATTATTTAGCTGTTGCTGCGGCCGATCGCCAAAATCGCTGAAATCACGCAAATTCGTAGAATCGGCCGTTGCCTTGCTCTGTCAGGGTTTCAAGCATTTTTTGTTCTAATTTGCTGGCATTTATGGGTAGCAAAATCGGATCGGCCGCAAAGTGTCTGTGGACTCCTTACTGGGTAGGGGTTTAGGATGGAGGG # Right flank : CAATCCCGATCGCTGATCTTCTCATCCCTGGCGTCGCCCCTTCGCACTTGCTGCGGAAATTAATTGATTGCTTTGTTACATTAGCCCTCAGAAGAGGGCTTTTTGCTGAGGAAACATAATTAATCAAAAATGTCAATTAATAATAAAATATTTATCCAAACTTCATCGACTTCGCTTAAAGCCTTACCACGAAGGAATCTGAATCAATCCTAGCAATCATTTAAGAATATCTACTGTTATTCGACAAATAAGAATAGCAATTTATACAATAGCCTTTGGATGCACTACAAGGAACTTCACCTGTGTCGGAAGCATACTGGCAAGCTAAAATCTGGGGATTACTCCACGATCCTGTACTGAAAGCTTTACATAATAACACTGGGCGCGGTTGCAATAGTTTCTGGCAAGAACTAGAAGTAATGCAGAACTGGGTAAGCAATGGCTGGAACCCAGAAGAGTCTCACCGTAAAATTTTGGAACATATCAAGCTGGCAGATTAT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 12 8592827-8593165 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018172.1 Calothrix sp. NIES-2098 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 8592827 37 100.0 43 ..................................... ACTGATATTTCGCCTTACGAATCTGGCTTAGGCGCAGTACAAA 8592907 37 100.0 38 ..................................... ATGTCAGTGACAGCACCAGTAACACTAGTAGGAACGTC 8592982 37 100.0 36 ..................................... TTTGCGCATATTAGGTGATCATGTACTCCATTAATT 8593055 37 100.0 37 ..................................... ACTTGCACGACGGTTGTTATCCCGTCTTTACCCGGCA 8593129 37 94.6 0 ..............................C.A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 5 37 98.9 39 GTTTCCATCAATCATTTCCCCGCAAGGGGATTGAAAC # Left flank : TAAATACAGGATCGCAAGCAACAGATTATCAACTAACCATCACAGCCCAAACTCCCACCCCACCAACACCGACACCAACTGTTACCGACACTCCTACACCCACACCCACCGTCACAACAACACCAACACCGACACCAACTGTCACCGACACTCCTACACCTACACCCACCCCAACATCTAATAGTCAATGATTAAACCTTAAAGCCCAACTTAGTTATAGTTGTAGATTGCTCTGTGCAAATTTCAAACTTCTCGACAACAGCCAATGAGTAACTTATGATTTTAGTTACCAGCTAAGTTCTTTGTGAACTGAAGCGGGGGCAAAAACACCGGGGGTTCACGAAAATCGCCAGAACCTTGATAAGTTAATAATTTCAGCGTTTCAAGAATTTGTTTAGTTGCAAATGCCTTGCAATAAGGTAGGCTGAAAAAGACCATTTTTTTCGGTTCGCGAAAACCCTTCCCAAAAACCTTGCTCTGGTTAAGTTTCAGAACCGAGC # Right flank : CTTATCTCGTTTTGCGATAATTCCCGCCCTGCAATAAATTGCGGGCTAATAGCTTAAGTGCGTTGAAACGCACTCTTAATCTTGGAGATATTATACTGATGGGTCTGACCCATCAGGTAGTTCGGCAACAGTATCCTTGAGTTCCGAGCTAAATTATGAATGGCAAACCTGGAGAAAAAATAGACTTGCGATCGCCTTTTAGTGAAAATTTACCTGATAGACTTTACAATTTCAGGTTAATGTTTTCAGATATGAACTCAGCAAGAGTTGTCGGGTACTATTCGTGACCAAACAAGACCAAAAACCCACTCGTTCATTCGCTGGAATTGCTGGCATTGTTGCCATTGCTACCTTAATTAGTAAAATCTTTGGTTTAGTACGGCAGCAAGCGATCGCTGCGGCTTTTGGTGTTGGTGCTGCTGCCACTGCCTATAGTTATGCCTACATTATTCCTGGTTTTTTATTAATTTTACTCGGCGGTGTCAACGGGCCGTTACACA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCAATCATTTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //