Array 1 6366-9105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAF01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 508, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================================================= ================== 6366 34 97.1 37 ................T................. ATGGTTTGATCCATACCCGGAATGATCGCTCTTTCGC 6437 34 97.1 39 T................................. ATCCGCCCGTACTCTAGGTTTCTGTGCGCACACCATGAC 6510 34 97.1 40 .............................A.... ATACGGCAACCGTCCCTCGCCGAGCCGGGGCCTTGGTGCG 6584 34 100.0 39 .................................. ATGCGAGTGCAAGTCCGCCAGCGCTTCCCGCGCTGGGAA 6657 34 82.4 52 ............................NNNNNN NNNNNNNNNNNNNNNNNNGGGGTGTGGACACATCACAGGATCGGTCCATGAC 6743 34 100.0 38 .................................. ATTCGAATCACAGTGCTGTAATTCGGCCTGAGAATCTG 6815 34 100.0 39 .................................. ATTGTCTGCCATCGCGGAGTCACTTCAGGCGCGAGGCCA 6888 34 100.0 38 .................................. ATCCCTGATCGGACACCGCTTGGTAGTTCGCTTCGCCT 6960 34 100.0 37 .................................. ATGTCCTGACCAACCTCGGCGTGCAGGTCATTGACTG 7031 34 100.0 41 .................................. ATGTCGTCGGGGATCGTCATCGTCACGTGGGCCGGTCACGT 7106 34 79.4 35 ...........................NNNNNNN NNNTGATCAAAATTGTTTATAAAAATATTCAATCA 7175 34 100.0 37 .................................. ATTGGCTTTAGCCATATCGTCCCGAAGAGATTTAATA 7246 34 100.0 38 .................................. ATAGTGGGGTGGTGATGGCGATGCCGAAACGAAAGCCG 7318 34 79.4 34 ...........................NNNNNNN NNNAGACGGGTCTAGCGAAGACCACCGTCCTCAA 7386 34 100.0 40 .................................. ATGAGATGCCGAGGTCGCGGAGTCGGGCATGTCCGTCGTA 7460 34 82.4 65 ............................NNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCAACTGGTCAACCGTCAATGGCGTGAACCA 7559 34 79.4 35 ...........................NNNNNNN NNNCGCTTCAGATCAGCCTCGACCGCGGCGGGCGT 7628 34 100.0 37 .................................. ATAGGGCGATCTGCTCGTCCCATGGTTCGTGCCACAG 7699 34 82.4 28 ............................NNNNNN NNNNGGTTTCCACCGTCGAGGCCGACAA Deletion [7761] 7761 34 79.4 38 ...........................NNNNNNN NNNCTCCCTGCTGGGGAGGCGTTGGGGGCACAGGTGGA 7833 34 100.0 40 .................................. ATATGGTCACTTCACCCTCTCTGATCTTCCGGAATGATGA 7907 34 100.0 39 .................................. ATCGGTGGGGCCTCTTGCTTTGTCCTTGTGATACCCACT 7980 34 100.0 36 .................................. ATATCAGCGACGCGCAGCAGATCTTTGGCGGTGTCG 8050 34 100.0 40 .................................. ATTTCATCGTGGACTTCTGACCGCCGCCATAAAGTTCGCT 8124 34 73.5 36 .........................NNNNNNNNN NGAGGTGCACTACGGCATCCCCGACTCGAACGGCGT 8194 34 100.0 37 .................................. ATGTCAAGGTGATGACCCGTCTGACCGGTTCAAACAC 8265 34 79.4 36 ...........................NNNNNNN NNNGCGCCATGTCTGCTCCTGGCGGCGGAGATGCCC 8335 34 100.0 40 .................................. ATCGCGTGACGCCCCCCGACATGGAAGCCTGGGTCACCGA 8409 34 100.0 38 .................................. ATGTGGGCCAGCGTGGTGGTCAGCGACTTGACCGACCT 8481 34 100.0 37 .................................. ATCCTGTGCAGTCCGTCGGCACCGTCGACGCCGAAAG 8552 34 82.4 40 ............................NNNNNN NNNNNNNACTTATCTTTGTGGGGTTGGTGGCAAACTTCCC 8626 34 100.0 37 .................................. ATGTGTGGAAGTCGAAGCCGTCTGGTCGAACAGCCTT 8697 34 85.3 34 .............................NNNNN NNNNNTGTGACCGGGGACTCGATGACTGGCGTCG 8765 34 100.0 39 .................................. ATGGTCGCTGTGGCCGGGCCGTGTGGTCCCGGCCGCCCG 8838 34 79.4 63 ...........................NNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGGCGAACACCAGGGAATTCCGCAAGATGCT 8935 34 100.0 37 .................................. ATGAGATGAAGCTCAAAAGCGGCCCGAGAGTCTCGCT 9006 34 73.5 32 .........................NNNNNNNNN NGTGCTGGCCGTCAACGGAGAACGTCAGCCCC 9072 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================================================= ================== 38 34 92.9 39 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCA # Left flank : CCCTCCGTGAGGAGGGACTTTGGCGGGTGTCGCAAATGCCCATCTATTGGCGTCAGCCTCAATGAAGGGGGCATGCCTTGCCGGCCCCGCCGGATTTAACCGTAGCGGGGGGAGCTGTGTGGGGGGCACGTCTCGGCATCGCCAGTGCGTGACGAAAACGCCTTGTCATGGCGGCTGTCAGGTCCGGAAACGCCTAGGGCTCGTGCGCGGCCACGTGGCCTTGTCAGTGAGCGCTGATCGGGGTGACGGGTCCTCGCGCGGGTGGACGAGAGGGTGGGCGGTTGGACGGAATCGGTGGCTCTTGGCGCCACCGGGGGTGCGAAAAAGGGAAGGTGGGTCAGCTGGGCGTCTGCCCTACCTCCCACCTTCTCATGGCGAGTCTAGCTCTCGGCGCCGGCGGGAGTTCCATGAGTTTCGGGACGTTGAACGGGTGGAGGGCTTCGCCCGGGGAGAGGGGCAACGCCACGTCAAGGCGCCATCGTCTCCGAGAGCTGGCGCAA # Right flank : AATGACCTGGGCTTGGTCGGCACCGATCTGGTAGGCGGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCCACGGTTCTTCGCGACCCCGTCGCCCACGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTCAACACCACGGCCTCCCCACTGCGGGCGTTTGAACCGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCGAGGATAGGCGACCGCGGTCCCGTGATTTGGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNCACCAATAATCGGCGTGATCTGCGGCCCCAGATTCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-43] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 9567-10468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAF01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 508, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 9567 35 100.0 37 ................................... TGTTCTTCACCAGGACGGAAGATGTGTTCCGCGTGCC 9639 35 100.0 37 ................................... TGTTCAGCCGACTTTTCTTGAAGATACTTGTTCGCCA 9711 35 100.0 38 ................................... TGCCCGCGAGGGTCTGACCAACAAGGCGGCGGACCGCA 9784 35 80.0 37 ............................NNNNNNN NNNCTCGGTGAAGGCGCACCGCTCGCAGATCATCACC 9856 35 100.0 38 ................................... TCCGACCTCATGACCGCACGCCACCGTGACCGGATCCG 9929 35 77.1 41 ...........................NNNNNNNN NNTCGAATGGGGCATGGTGACCCCACTGGCAGACCCGGACA 10005 35 80.0 35 ............................NNNNNNN NNNAGGATGTGGTGCGATACGACACCGCAGGCCGA 10075 35 100.0 38 ................................... TCGGGGTCGAAGAACTGATGGATGTCACGTCCGGGCGT 10148 35 100.0 37 ................................... TCAGAATATTTCCAAACAATTACAAAAAGATTCGGGA 10220 35 77.1 34 ...........................NNNNNNNN NNATTCGATCCGTGGTGGTATCGAAAGTCACTTG 10289 35 100.0 37 ................................... TGCCAGGTGACATTGAGCTCGGACTGCACGGCCATCG 10361 35 77.1 38 ...........................NNNNNNNN NNGAGCACAACGCCCTTCGGCCATCGCGCAGGATTACC 10434 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 13 35 91.6 37 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAA # Left flank : GCCCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGACCTGGGCTTGGTCGGCACCGATCTGGTAGGCGGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCCACGGTTCTTCGCGACCCCGTCGCCCACGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTCAACACCACGGCCTCCCCACTGCGGGCGTTTGAACCGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCGAGGATAGGCGACCGCGGTCCCGTGATTTGGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNCACCAATAATCGGCGTGATCTGCGGCCCCAGATTC # Right flank : ATGGCGGGCGTGGGAACAGGGCTCCCACTAGGCATTATACCGGCCGCCTGCGAGCGGTGCTGAAGAAGGATGGCTCGCGCGTGGAGGATTGATGACCCCTTCAGCGCAATCTGCTTGTGACAAGGGGAAACATCACGCGAGCGGCTCCGCGTGACAACCGGGCCGCAGAGCCGCTGGTCGTCAGATGATGATGCTGCGTCCGCCGCTCTGGTACCTCTGACCGCCCAACCAGGTGATGCGTTGGGCGTCTGCCGACGTGGACATGCCCAGGTCGCAGATCACCACCGAGTCCTCATCAATATCCATCGCGTCGGTGAGATCGTGGCGTAGCACCAGCAGGTGTGACGGCGGACAATCAACCATGAATACGCTGTACTGCACACGCTCCCCGTAGCCCTTCAGTACCGTGGCCAACCTGGTGCGACGACGGTCATCGGGCACGTCGTAGGCGATCAGAAAGCAATGGGAATCTCGTCGGCTCATCTGACCGTCATTCCTAT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAA # Alternate repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //