Array 1 454101-455593 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBFY01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain B87HEB1.1 NODE_2_length_634393_cov_13.0032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454101 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454162 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454223 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454284 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454345 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454406 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454467 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454528 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454589 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454650 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454711 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454772 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454833 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454894 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454955 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455016 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455078 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455139 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455200 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455261 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455322 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455383 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455444 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455505 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455566 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471725-473689 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBFY01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain B87HEB1.1 NODE_2_length_634393_cov_13.0032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471725 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471786 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471847 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471908 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471969 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 472030 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472091 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472153 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472214 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472275 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472336 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472397 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472458 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472519 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472580 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472641 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472702 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472763 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472824 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472885 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472946 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 473008 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473111 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473172 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473233 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473294 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473355 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473416 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473477 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473538 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473599 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473660 29 96.6 0 A............................ | A [473686] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //