Array 1 145345-142205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWJN01000011.1 Chromobacterium subtsugae strain F49 Contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145344 29 100.0 32 ............................. ATGGCGGCGCAGCGAGCGCGTTCGCGCCGGCG 145283 29 100.0 32 ............................. TCACGACAAAATAGGAAAAAATAATATGCCTA 145222 29 100.0 32 ............................. GCTTACCTTAAATTCTATCGTTTTGGTCCTAT 145161 29 100.0 32 ............................. TGACTACCGAAAATGCGGCGTTTACCGCTGTC 145100 29 100.0 32 ............................. CCGGCAGTCTTTGCTAATTCGCAGCGGGAACG 145039 29 100.0 32 ............................. CTCAGCGAGGTCAACGCACAACTCGCGCTATT 144978 29 100.0 32 ............................. TGGGAAAACAACGTTACCCGCTTCTTCCGCTT 144917 29 100.0 32 ............................. CCCTAGCTAGCCAGAATGGCGCAGGCGCTTTC 144856 29 100.0 32 ............................. GAAATTCCGCGACAGGGCTTCAGATACAATAC 144795 29 100.0 32 ............................. GTTGAGCCGAACGTGCAATATTTTGCAGTTTT 144734 29 96.6 32 ............................T CGAACCGCACGGCTACCAGATGCTAATCATCC 144673 29 100.0 32 ............................. TCCTGGCGCATTTCCAGCGCGGCGAACAGTGG 144612 29 100.0 32 ............................. GAGATTGAGATGTTTGAAGTCACTCTGAAGCA 144551 29 100.0 32 ............................. GCGATTTGCTCTGGAGCGCGCCGAACTCAATG 144490 29 100.0 32 ............................. GGCGCTCCAGGGTGGGGCCGCCCCGTCGTAGA 144429 29 100.0 32 ............................. GCAGCCGACAAACTGTCCAAACTGGACAGTAG 144368 29 100.0 32 ............................. GTCCGCGATTACGCACGACTACAGGCGGCCTA 144307 29 100.0 32 ............................. GCGGAGCGTTGGGCGTCGAATTTTTTCGTTCT 144246 29 100.0 32 ............................. TCAGAGTCAGGAGGCCCGGCTTGCCCGACTCG 144185 29 100.0 32 ............................. CCCCACGTAGTCGCGCCGGCGGGCGCGCTGGA 144124 29 100.0 32 ............................. ATGTGGTTTGGCAATATGATAGCGTGATCACA 144063 29 100.0 32 ............................. ACTTTTTTCAACTTTTAGGTGACTACGTATTT 144002 29 100.0 32 ............................. TCCGACCTCGCCCGGCTACAGCGTGCGTTTCC 143941 29 100.0 32 ............................. CAAGAAGTAGCGCCATGGCCAAGAACTGGATC 143880 29 100.0 32 ............................. CTAAGGAAAACCGGCCGGCTATCTCTGTTATC 143819 29 100.0 32 ............................. TACCAGCGCACCCTATGCTTCTTCACTCTGCG 143758 29 100.0 32 ............................. ATGCGGTGGCCACCGTGAATGCGGTTGTAACC 143697 29 96.6 32 ...........A................. TCATTTCTCGCCCTCGATATTAGCGCTTCCTT 143636 29 100.0 32 ............................. GACCACGCCTCCTGCTGCTTCTCGCTTCGCGT 143575 29 100.0 32 ............................. ACGAAACCGAATCGCGCGTCAGAGCCGTCTTC 143514 29 100.0 33 ............................. GAGCTGAAGAATGGAATTCCCGACGCAACCTAA 143452 29 100.0 32 ............................. GGCGCAGATCCTCGCCCGGTCCACCACGCAAG 143391 29 100.0 32 ............................. ATGGGCATCGGTTACGAGGCCGTCGAGCTGCC 143330 29 100.0 32 ............................. CCGCCTATCAGGACGCGGACACCCAGATGAAT 143269 29 100.0 32 ............................. TTGGGTACCAATCTAGCGCGTCCAATTCCGTG 143208 29 100.0 32 ............................. TGGTCCGATTCTGCCGACCGTCGACACCAACA 143147 29 100.0 32 ............................. GCATGGCGACCTTGGTTCGAGGCGCGCCCGGA 143086 29 100.0 32 ............................. TGCTCATCGATATCCTCCAGCAACCCGGCATG 143025 28 96.6 32 .....-....................... TCATCGATGCTGATACGGAGCTGAAACGCAAT 142965 29 100.0 32 ............................. TCGCGCCTATAACCGTGCCGAGGATCATTGCG 142904 29 100.0 32 ............................. GCGGCCTATGAGGAGTTCTAGCCCCCCCGCCT 142843 29 100.0 32 ............................. CCGATTTTGTCCTGACTGGCCCGGATAACCTT 142782 29 100.0 32 ............................. TTCGGTGTAGGCAGCCTGCAGCTGCTCACGCA 142721 29 100.0 32 ............................. TTTTGTCCATGAGAATGCATGAATATCTCCGA 142660 29 100.0 32 ............................. TCGAGTACCATCACGCGGTCTGCGAATATGCT 142599 29 96.6 32 ..............A.............. CTGCAGTTGGATTTCGAGCAACAAACCTACGC 142538 29 100.0 32 ............................. TGCCGGCCGCCCTGCAGCCGTATTTGCCAAAA 142477 29 100.0 32 ............................. AGTTCGCGCGCTCGATTGCGAAATGGGGGTAT 142416 29 100.0 32 ............................. AGGGCGTGGCGCTGGGCCGTGCGAAGTACCGC 142355 29 100.0 32 ............................. CCAATACCGTTTTGCCGGCTCCCGTTGGCGCT 142294 29 100.0 32 ............................. ATTCGCGAACAACTGAATAGCAACGGCCCCGA 142233 29 79.3 0 ......T............T..C.GT.G. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.3 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAGACGATGCTGGACGCCGGCGGCCTGGATAAGCCGGAGTCCCAAGGCGTGGTGGACGCGGCGTTTCCGGAGGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGTGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTCGGCACTTACAACCGGAAAATCCGCGACTACCTGTGGCAACAGGTGGAGGAGGGGCTGGAGGACGGCAATGCGGTAATGGCCTGGCAGGCCGTCACCGAGGCAGGCTTCGACTTCGTCACCCTAGGCGCCAACCGGCGGATGCCGGCCGAGTTCGACGGAGCCAAGCTGGTGTCTTTTTGGCCTCCACCCGGGGCGGATGGGGCTGGCGAATAGGATGTTGTCGGCTTGGGCGGAAAGGGGAGTTGGGTTCTTTAAAAATCGGTAGATTTTTTGGAGGTGTTTTTGTTTTTAAAAATCAATTGCTTGCAATTGGT # Right flank : ACTAAAATTCGGCAAGTTACGCTTTGCACTGGGTGTCCCGCACTCCGCGTACCTCCTACCTACTGTTGCATCTCGCTTAGATATTGCGTCAGCCGCAGCGTCAGGCTGGCGCGGGCGGCGTTGGCTGGCCATACCGCGTACACCCCCAGAGCTTCCACCTGCCACTCGGGCTCGACTTCGCTCAGCCTGCCGGCTGCGATGTCGTCCGCCGCCAGGAAGGCCGGCGGGGTGGCCAGGCCGCAGCCGGCGATGGCCAGCTGGCAGACGGCATCCAGGCTGTTGGCGCGGATGGCTGGCTGGATGGAGAAGCTGTGCGCCTCGCCGGCCGCGTCTAGCAGGGTTTTGTGGTCGGGCCGCATGCGTATGCCCAGCCAGGGCCAGTCGGCCAGCTCTTGCGGATGGCGGGGCGCGGGGCGCGCCGACAGCAAGGCGGGCGCGGCCACCAGCAGGCGCGGCATGTCGAACAGGCGGCGCGATTTTAGCGCGCTGTCCGGCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156051-155107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWJN01000011.1 Chromobacterium subtsugae strain F49 Contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156050 29 100.0 32 ............................. TAGGAGGGCGGACATGACAGATCGCAGAATTG 155989 29 100.0 32 ............................. TTCTTGTACTGGATGTCGAACACCACCCCACG 155928 29 100.0 32 ............................. TCATCGATCAGTACCTCGAGGAACGATCGTTC 155867 29 100.0 32 ............................. GATGCGCATCCGCACCGATTCGATTTCACCTA 155806 29 100.0 32 ............................. CGATGGTCGAGTGGTTGGCTTTAACGGAACGC 155745 29 100.0 32 ............................. GAGGCCGTGCATTTCGGCAACGTGCTGGAGGG 155684 29 100.0 32 ............................. CTCATCGAGCGATTCGTTGGTACTGACGCAGC 155623 29 100.0 32 ............................. CGGGTGCCATTGAGCAGAAATTGCTGGGTCGG 155562 29 100.0 32 ............................. GCGATGATCCGGACGATGATGACGACGACGGC 155501 29 100.0 32 ............................. AGTTGCGAATCACCGCCAATTTCCTCCGTTTC 155440 29 100.0 32 ............................. AAAAAGGATTAATCAAAGCCGGCCCAGCTGGA 155379 29 96.6 32 ............................T TCTCGTCTCCAAAATGGTAATGATCCCAGTAC 155318 29 100.0 32 ............................. TCTAACAGAGCAGTTACGCCAACGAAGCCAAA 155257 29 100.0 32 ............................. CCGAATCCGCCCAACTGCTGGCCCATGTAGCT 155196 29 96.6 32 ............................C GCTGGGCATGGGTTGCCCCGAGATCCGACGCG 155135 29 89.7 0 ........................GG..A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGCTGCCGCAGCTACAATGCGCCGACCGCGCCTTCCGCCCGGTTCACCTGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTGAGCGCCAACTTCGGCGCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGCTGGAGCTGGCTGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGGTGGCGGATTGCGGCGGGGGCTGATGCGCGGCGATAATGCCGTTGTCGTTTTGCGGGCGCTGTGCCTGCGGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGATGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAATTTGGT # Right flank : CGGCTTGCAAACGTGATGTGCGGCTTGTTTTTCTGGATGGAATGTCTCGGCTTGTGCCTGCCTGGCAAAATGCCGATAATGATTGAGCAAATTGCCTGATTGGAGATTGCCATGCCCGCACGCGCCGCATTCCGGCCCGACCCCGTTCTCATCCGCCGCGCCACGGTCAGGGAGGGAGAGCGCCGCTCCCGCCAGTCCGACTTGCTGGGCGCGCCGGTGAGCAGCGATTACGACATCGTGAAAGAGGTAGCCAAGGGCTTGGATCCCGGCGTGATCACTCGCCTGACCGATGAGGGGCTGACCCGGCGCGAGCTGGAGTTCGTCATTCCGCCGCGTACGCTGACCCACCGCATCAAAAACGGCGAACGCCTGAGCACCGACGAATCCGAACGCAGCGTGCGGCTGGTCAACCTGCTGCTGCAGGCCGAGCAGCTGCTGGGCGGCAAGGAGGCGGCAACCGCCTGGCTGCGCCAGCCATTGCGCCGTTTCGATGGCCGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 162034-160418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWJN01000011.1 Chromobacterium subtsugae strain F49 Contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162033 29 100.0 32 ............................. AAGCTGAACCCCTTGTGCCTGCCCTCCTCCTT 161972 29 100.0 32 ............................. GGATTTAACCAGTTTCTTGGGGTCGGGGTCTG 161911 29 100.0 32 ............................. CGCGGCACGACGCTCGTTCAGCGTGCCGCAGA 161850 29 100.0 33 ............................. GACGTCTTAAACATGATGCTGGGATCTTTGGGC 161788 29 100.0 32 ............................. GTAGTGTCGTGGTTTGAGAGAAAGGCCTCCCA 161727 29 100.0 32 ............................. GTCCGCGACGACTAACTTTTTGCCGGGGGGGC 161666 29 100.0 32 ............................. GTCAGGGCGCACATCCAAGGGCAGTACTCGGC 161605 29 100.0 32 ............................. GCGTGATGATGAACGCCGACTCTCGCCAGAAT 161544 29 100.0 32 ............................. CGGATGCTGGGGCCGGTTACGCTGCTCTTGCC 161483 29 100.0 32 ............................. GCAACTGAGCCACGCCGACAACCGTGCCGCAC 161422 29 100.0 32 ............................. GTTCATGTACAAAGGGGTCGAATGTAGAGAGA 161361 29 100.0 32 ............................. TCCTCTGGATTTCAGGCGAATGGGATGCAGGT 161300 29 100.0 32 ............................. TTCCCGGATGGCCTGAAATGGATTTGCGGCTT 161239 29 96.6 32 .......T..................... TTACCTCCGGGCGCGATTTTTGTTTGTGACGA 161178 29 100.0 32 ............................. CAGTTCCTTCCGGTGAACCACGATGGCGATGT 161117 29 100.0 32 ............................. TTCCTTTCGCCTACGATCAGCGCGGAGGAGAT 161056 29 100.0 32 ............................. TAGCCGGAGTTCGGCACCGTCGGATCGGCCGT 160995 29 100.0 32 ............................. GAGCAATCAGCCATGCGCCTCTACCTCTCCGC 160934 29 100.0 32 ............................. GCGGGATCCGATGTACTGCTGTTCCAGGGCGA 160873 29 100.0 32 ............................. ATAAACCGCGCTTCTGATGATTGCGGTCAGGT 160812 29 100.0 32 ............................. GTGCCGATGCCGCGCATGCACTTCGCCATCAT 160751 29 96.6 32 ...................A......... CCGGCGATGTACTGGTTCTGCACGTCGAACCC 160690 29 100.0 32 ............................. GCCGTGGCGTCGCCGCCGGTTACCACCAGGGC 160629 29 100.0 32 ............................. GCGAGTGGTTTTCAGGCGAATGGAATGCAGGT 160568 29 100.0 32 ............................. TGGGGGTCCGGTGTCAGGCCGTAATAGGCGGC 160507 29 100.0 32 ............................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 160446 29 89.7 0 ..............C..........CT.. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GCGTGCGCGCGCTCCACCGCCTCGCGGATGTCCTTGACGCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGTATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACCGCCAGGCTCAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCGTGCATGCTTGCGGGATGGCGGCAGGCTATGGATCTGGGCGATTTGAGCGAAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTATCTTTAAAAATCAGTGGATTGAAAATGGT # Right flank : CCTGTATCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGTTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCATCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGAACCACCACGTCGAACTTGTCGTCCGCGCGGTATACGGCTTCGCTGCCGGCGCCGGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //