Array 1 57919-55051 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYQ01000021.1 Streptococcus cristatus strain NBRC 106105 sequence021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 57918 32 100.0 34 ................................ TATACGTGTGTTTGATAATAGCTGTCTCAGGGAC 57852 32 100.0 33 ................................ CCCAAACCCATAAATGAGTTACAGCATGGCGAA 57787 32 100.0 35 ................................ GGAAGTTACTGGTGAAAATTATTATATGTGAGCAA 57720 32 100.0 35 ................................ ATTTTAGGGTGGAAGGTCTTCCAACGTTCAGCCAT 57653 32 100.0 33 ................................ AAACCAAGTTATCACCGTGACAAGAATGTATGA 57588 32 100.0 33 ................................ GTTCCAATGTCACTTGATGTTACTTTCCACTTG 57523 32 100.0 35 ................................ TGATATAAGCTGATAGGGAGAAAAATTGAACTGAC 57456 32 100.0 34 ................................ CAGATAATTTTGAAAAACCCTTTATCTATTAAGG 57390 32 100.0 34 ................................ AACAAATTTAGTGCCATCTGGCAGACCAGCTAAT 57324 32 100.0 34 ................................ AACGTTATGGTGATTTGGTTTATTCTAAGACTAA 57258 32 100.0 33 ................................ ATCCTATCCTTATGTGATGTATGGTCACAAAAT 57193 32 100.0 34 ................................ ATCAGGGATGAACTTTTTAGGAATGATAATGCAC 57127 32 100.0 34 ................................ GAAATCAATATAATTTCCTTTATAATACGCTACA 57061 32 100.0 33 ................................ CTGTTGTTTCGGACACATTCTCACCGCTTGAAT 56996 32 100.0 33 ................................ TATGCTAGGTTTGAACTCATTAGGTGTTGATAA 56931 32 100.0 34 ................................ ACCATCCGCTACGAAGACCTGAACAAGCTAATAG 56865 32 100.0 34 ................................ CTCAACAACTACCATTTTTATACGATTGATAACT 56799 32 100.0 34 ................................ TGAGAACCTTTTTTGAAAGGGTCAGCGCCAGAAT 56733 32 100.0 33 ................................ GGAAAAGCCTGGTTATTTGAAAATATTTAGTTT 56668 32 100.0 34 ................................ CAGATGAATTGAAAAAGTATGCTCTTGATCCAAC 56602 32 100.0 33 ................................ TTTGGTTGAAGCAGATAGGCTAGATTGACCGTC 56537 32 100.0 33 ................................ CACTGGTCTAGGGTGTCTAATAGACGACTGCGA 56472 32 100.0 35 ................................ CTAGCAGAAGAAAGCCTTATGCTTAACATCATCTT 56405 32 100.0 34 ................................ TTATGTTGACATAAAATCTCTTGTAAACGGTAAG 56339 32 100.0 34 ................................ AACGATGGATGTAGTGTATGTGAGCATGACTAAG 56273 32 100.0 34 ................................ GAGTTACTGGCGAAAAAACAATTTATGCAGTAAA 56207 32 100.0 35 ................................ ATAAAACATAGCATATATACCACGTGAAAGAATAG 56140 32 96.9 35 .................G.............. TCAATCATCTTCCAAGCAAGAAAGTTCCTTATCTT 56073 32 96.9 34 .................G.............. AGAAAGCTGCATCAAGCTTATTTGATACTTTTAC 56007 32 96.9 34 .................G.............. TAGTTGGTGCAAAAGAAAGCCAGATGTAAAAATC 55941 32 96.9 33 .................G.............. CAGTGTTTATCATAGTAGGAAGCTCATCGAACT 55876 32 96.9 34 .................G.............. GTTTCAAAGAAACAACAATCACAAAACAAAATCC 55810 32 96.9 34 .................G.............. ACATAAACTATTGACATTATTTTCATTTTATATT 55744 32 96.9 34 .................G.............. TTAAAAAGCTCTAAATCAAAATTAGTTAGATAAA 55678 32 96.9 34 .................G.............. ACTCCACCCTTTAAGAGCGTCATAACCAATGGTT 55612 32 96.9 35 .................G.............. GAAGGAATGTTACACATCCAAGTGCGATTAAACCA 55545 32 96.9 34 .................G.............. TCCTCAACTATACCTAAAGGCTTAATAAGTTCAT 55479 32 96.9 34 .................G.............. GTAACTTGAGAAGACTGCTCCTGCTGTTGGGGTT 55413 32 96.9 35 .................G.............. ACTGATGGTTTATAATGAATAATAAGTAATATAGA 55346 32 96.9 33 .................G.............. ATTGTTTAGGTAGTTCAATGACTTCGAGATAAA 55281 32 96.9 35 .................G.............. ATACATTGCCCGTTTAGCTTCATCTAAATAATAAT 55214 32 96.9 33 .................G.............. TGGTTGTTGATGAAATTAAGTCCACCCCAAATA 55149 32 96.9 35 .................G.............. ATGACCTGCATTACGGCCTTAATGATGCCTAATAC 55082 32 96.9 0 .................G.............. | ========== ====== ====== ====== ================================ =================================== ================== 44 32 98.8 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CTAAGACAATCCGTGGGGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCCGGTTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGCAGGAAAAGATTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAGGCTAAGCTTTTGAGTATTATTGACACTGAGTCTGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTCTAGAAACGATTGGACGTAATACAAGTTATGATCCTGATATAGGGGTATTACTCCTTTAAATAGTCTAGTGCGAATAGGTGTTGCTCATAAAAAAGAAGGACTTTCGCGCAAAAAATAAACAAAAACAAGGCAAAAATTCGAAATTTTAGAAGAATTTTCTTCTCTCGAAAGATAATGTTTGCTTAAAACAGTGCAACTACGCGCT # Right flank : AACACCCTCACGCTTGATAACCTCAAAATAACCAGTCGCTCCCTCCCAGAATGGAACCTACTGCGGTTAACAAAGAGCTAACCTCTCCTTTTGGTTGGAAGGTTATTTGTCAGTTTTAGAGCTATGTTGTTTCGAATGGTTCCAAAACCAAGCGCCCCAGATTCAAATAAATCCGATTCTTAAAAAGAGGGTCGGATTTTAGTTTTGTTTGATTTCGATTTTCTCCCTATAAATTTTTTGCAATATCTGCCTGTATTTTCCTGAGATTCTGTTATAATGGTAAAATATTTATTTAGGAGGAAGAGAATGAACTATATTTTGGAAATTTTACCCAGTCTTCTAAGTGGAGCGGCAACTACCTTGCAAGTGTTTGCTTTGGTCTTGGTTTTTTCGATTCCTTTGGGAATTATGCTGGCTTTTTCGATGCAAATTCGCTTGAAGCCCCTGCAATGGCTGCTTCATATTTACATTTGGATTATGCGTGGGACGCCGCTTTTATT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27408-30549 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYQ01000035.1 Streptococcus cristatus strain NBRC 106105 sequence035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================================== ================== 27408 24 100.0 46 ........................ TATTGTTTTTAATCTCATAAAAATCTAAATAAAGTTAGACCCCCCC 27478 24 91.7 50 ........A..............G ATTTTGAGTTTAGGAATGCGTATGCCCCATCGATTCGTTAGAACCCCCCA 27552 24 91.7 49 ........A..............C TATTTGTGTCCTTATCTGTAACCTTATTACGGTTCGTTAGAACCCCCCC 27625 24 95.8 47 ..............A......... TATAATGCTTGTGGCTCTTAGGAAGGAACTTCCGTTAGAACCCCCCT 27696 24 87.5 47 ........A.....T........G ATCCTATGTCAACTACATCAAAATAATATACGCGTTAGAACCCCCCT 27767 24 95.8 51 ..............A......... TGTTTTGCATTGGTGTGTGGAAATAAAGATCCATACGTTAGCCCCCAAAAA 27842 24 83.3 50 ......T.A.....A........A AATCTTAAGTTTTTCAATTTACTTGAAATTCCCATTGGTTAGCCCCCCCT 27916 24 95.8 47 ........A............... TTCGCACGATGTCGCTTATGTGGTTGATGTGTTCGTTAGAGCTCCCC 27987 24 95.8 51 ..............A......... TGTTTTGCATTGGTGTGTGGAAATAAAGATCCATTCGTTAGATCCCCCAAA 28062 24 91.7 45 ................T......C TGCATCTTCTTCTGTCCAGACCAGCTGGTATGTTAGCCCCCAAAG 28131 24 91.7 48 ..................T....C TACCGTTCTGCGGCGCTATCCCAGTGAGGTACTGGTTAGAACCCTCCA 28203 24 87.5 50 T.......A..............C CAACAGGGGCTTTACCTTGATTTGCTGGGTCTAATGTTAGCTCCCCCCAA 28277 24 95.8 49 ..............A......... TGCGATTCCCATGTTTTAAAACAAACATTTTTTTAGTTAGAATCTCCCA 28350 24 100.0 49 ........................ GTCATCATTTTATAAATATAAGAGTCGCTCATTTCGTTAGAACCCCCAT 28423 24 95.8 51 .......................A TAAGTTTTATAGGTTATCATCGAATTAAAGAACTTGAGCTAGACTCTTCCA 28498 24 91.7 50 C.............T......... CGTCGATACGACTCTGAATGTCCATATCAAGATTTTGTTAGACCCCCAAG A [28500] 28573 24 91.7 53 ..............T........A AAAAATCCACTAGTGAAGCGATAGGAGTTTGGGATGAGTTAGACCCCCCCCCT 28650 24 91.7 48 ........A..............C CCAATTGGCTCTTTAGTTTCAATCTCAAGGATTGTGTTAGAACCCCCA 28722 24 100.0 49 ........................ TAAAATACTCCTTCGTCCAGCTGTACACTGTATCAGTTAGACCCCCCCT 28795 24 87.5 48 ........A.............TG GTTCTAAAACCTCGCATTGAGCAATATCTTCTGTGTTAGATCTGCCCT 28867 24 83.3 48 ..AT..T................G AAGTAACGAAGCCTAATACATTATCAGGACCCTTTGTTAGACCCCCCC 28940 24 91.7 47 ........A..............G TTTTCACCGCTTCTTTCTTATCCGGTGTTTTTAGTTAGAACCCTCCA 29011 24 87.5 49 T.......A.....T......... TGACGATGACAGGGCGCTTTTGGACATCACGGTACGTTAGATCCCCCCT 29084 24 87.5 46 ..A.....A..............G CCATGCCAGCATCTTTAATAAAATCAATCATTGTTAGACCCCTCCA 29154 24 83.3 50 T.......A.....A........A TAAGTTTTATAGGTTATCATCGAATTAAAGAACTTGGTTAGACCCCCCAC 29228 24 95.8 45 ..............T......... CACGCTCCCAATCTAAAATCACGCGCATTTGTGTTAGAGCCCCCT 29297 24 91.7 48 ........A..............A GAAGAGTGCCGGATTTACAGAAATGGTCGATAATGTTAGACCCCCCAC 29369 24 95.8 48 .......................G AAATCAAGTGCACTCAAATCATCAGCTCCTTTAGTTAGAGCCCCCCAT 29441 24 95.8 48 .......................A TACTTGAAGATTCAACAATAGCGAACCTACGGCCGTTAGAACCCTCCA 29513 24 87.5 49 T.......A..............C TAGCAATTTCGATTGCCAGTTTTGATTGGATGTTTGTTAGATTCCCTCT 29586 24 87.5 50 ..A...........T........G CAACATCCATGTCGTCAAAGTGCGATCGATAGCCAAGTTAGAGCCCCCCA 29660 24 87.5 49 ........A.....A........A TAGGGTCAAATGGTGCTACTAAGTGTTTACGTTTGGTTAGAACTCCCAT 29733 24 87.5 49 ..C...........T........G ATTCACCCCACGAAATTTTGAAATAGATACCTGCTGTTAGAATCCCCTT 29806 24 91.7 47 ..............T........A GCTCTGGATTTTCGTAGATGTTACCGATGATTTCGTTAGAACTCCCT 29877 24 91.7 50 ........A.....T......... TTTTCAAACTACTACTAGCGTTTGCTAGCTATCTAAGTTAGAACCCCCAA 29951 24 87.5 48 ........A.....A........G ATAAATGTACCAATCAGGTAGACCAAGAAAATATGTTAGATCCCCCCC 30023 24 87.5 45 ........A.....T........A GAAAATCAGTTAAGGTTCGACTTTCGTATTTTGTTAGACCCCCCT 30092 24 91.7 53 ..A.....A............... CTAAAATTTCAATATCATGTATCATAGTCTCACCTATATGTTAGACCCCCAAA 30169 24 91.7 46 ........A.....A......... GAATCCTCCTAAATAAAATTTTCAAGCAAAAGGTTAGAACCCTCCA 30239 24 91.7 47 T.............T......... ACCATCGATCATCCCAAAATGATCCTTGTCAGCGTTAGATCCCACAC 30310 24 95.8 48 ........A............... AAAATCTTTTTACCATATCGTTTAACAGCCTTTTGTTAGATCCCCCCT 30382 24 100.0 47 ........................ CTTTTCAAACAGTTCTTCCCAAATTGTAGATTTGTTAGACCCCCCCT 30453 24 95.8 49 ........A............... TGTGATTCCCATGTTTTAAAACAAACATTTTTTTAGTTAGAATCCCCCA 30526 24 70.8 0 ........A.....T..A..GTGG | ========== ====== ====== ====== ======================== ===================================================== ================== 44 24 91.4 48 AATCCTCGCGAGGGGACGGAAACT # Left flank : TGAAGCCTTGGATCCAGCAGAGTATGTGTCTAGCTATACAGGAGGAGGGAAAGATGGTCTTCTTTAATCTTGATGATGATGAAAAAGAGTTTGCCAGAAAGAAAACAAAATTTTGTCTGGTTATTTACGATATCGTCAGCAATAAGCGGCGCTTGAAGCTGGCAAAGCTTTTGGAAGGCTATGGCGTGAGGGTTCAGCGCTCCTGCTTTGAGCTGGCTCTTGAGAAGCTGGACTTTGACTGCCTGGTGAGAGAGCTGAGAACCTTTTATCAGGCAGAAGAAGGGGACAATATCATTATCTATCTGGGGCATAAGGAAGAGAGGATTGTTTTTAATCCTTATGCTAGCGCGGAGTTGCTAGAGGATATTTTGTTCTTTTAAGCTGTTATTTCTGGGCTAGACATGGTATAATGGACTTAGGTTTTAGCTAGTTTCTAAGGGGTACAAGATGTGGTGGGGCTCTTTTGAGGCTTTATACAAGATATGCCGTTAGACCCCCCC # Right flank : GCTGGGGGCTTTTTTACTTTCCCTCAGCTTCTTGCTTCGCCAAGAAAGAAGGATCTTGACTGCTTAAGCTTTTTTTAAACGCTTCAAAAACATTGACAACGCTTTCAAAATTTTATATAATAAGCTGAGTAGATAATAATCGTTCTAAAGGGCGCCATGAAATCGGTGAAAGATTCTTTTGCCTTTTTCGGGCGCTTTTGCAGTATAGAGAGGAGACCGTGTGAAGAAAGTAGAGTTACATTTATCAAAGACAAGACTAAAAGACGAAGAATTGGTCAGTAAGCTTCAGGGCTTTTTGATGGCGCAGATTTCGCCAGACTTTGCGACCTTTCTCCATGAGCAGGAGACCAATCCCTACTCGATGAATCTGAGTTCCACGCGCGATGAGTCGGTGTGGGTTGTCAATTTGCTTTCAGAAGAGGCGGAACGGCAAATGCTAGCTCCTTTATTAAACTTGGAAACCATCAAGCTAGATAGCTATGCTGAGGAAATCCTTGTCA # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCTCGCGAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [24-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //