Array 1 48332-50146 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDDM01000014.1 Campylobacter coli strain Cj1655 2_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48332 36 97.2 30 T................................... AAATTTGATGATAGCTTAGAAGTTGATTTG 48398 36 100.0 30 .................................... AAATCAGATCAATTTATGATAGATGCTGAT 48464 36 100.0 30 .................................... CAAAGAATAGAAATAGTGGTAACTTATCTA 48530 36 100.0 30 .................................... TAATTATTTAAATCATCTTTCTTATTTCCA 48596 36 100.0 29 .................................... TTGTCAAGTTTCAAGCGAAGACGCAAAGC 48661 36 100.0 30 .................................... CACTCATCTTTAAATCTTGTAGCCCAAGTT 48727 36 100.0 30 .................................... TCCATTCTCATAAAATATTTAGCCATTATT 48793 36 100.0 30 .................................... ATTGTGGGAGAAAAGCAGGCGTAAGGGGAG 48859 36 100.0 30 .................................... ATAGTTTATATAACTCCTTCAAGTCTTATT 48925 36 100.0 30 .................................... ATGTTACATCTATTTGTAGCATTTACTTGA 48991 36 100.0 30 .................................... GCAACCGGTAGCACTTTAACAACTACAGAG 49057 36 100.0 30 .................................... CGATTTTAATTTAGACTTAACACCACCTTT 49123 36 100.0 30 .................................... TTTTTAAATTTTATACTCTCATCTATTATT 49189 36 100.0 30 .................................... ATCGCCCCATTTTATAACGCAATCGGTTTT 49255 36 100.0 30 .................................... TGATTGAAGTGTAGTATGGGCTGTAGCACT 49321 36 100.0 30 .................................... CTTTGCGGAATTATGGCAAATTCAGTCAAT 49387 36 100.0 30 .................................... TTTTGTTGAGTGGGTTATGAGCCAAAATAA 49453 36 100.0 30 .................................... CGATTTTAATTTAGACTTAACGCCTCCTTT 49519 36 100.0 30 .................................... ACTGCTATAAGAGGAGCTACTGGTCAAGAA 49585 36 100.0 30 .................................... CCTAACATACTAGCATTAGTTTCTCTTGAG 49651 36 100.0 29 .................................... AGAGATAACGAGTTTAATTATACTAGAGA 49716 36 100.0 30 .................................... ACCTTTTTTAGCTGTGCTTTCTGTTTTAAT 49782 36 100.0 30 .................................... AACAAGTTGACAGCATAGATAGCGATTTAG 49848 36 100.0 30 .................................... TCTTTTGCTCTAAAATACTCGCTTATTTCC 49914 36 100.0 30 .................................... TACCAAATTCTTGCATATTAGCTACATTAG 49980 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 50046 36 100.0 29 .................................... AAAAACAACTAGGGGAGAAAAAGAAGTTG 50111 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGCTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCTAATCTTGAAGGTAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTAGTACCAAAAGAATGTGAAATGTTAGAAAATGAAAGCTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGGT # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTCATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACACTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTATTTCTAAATTTACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //