Array 1 3818887-3816720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051398.1 Salmonella enterica subsp. enterica serovar Uganda strain CVM 22436 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3818886 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 3818825 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 3818764 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 3818703 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 3818642 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 3818581 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 3818520 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 3818459 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 3818397 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 3818336 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 3818275 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 3818214 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 3818153 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 3818092 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 3818031 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 3817970 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 3817909 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 3817848 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 3817786 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 3817725 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 3817664 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 3817603 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 3817542 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 3817481 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 3817420 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 3817359 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 3817298 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3817237 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 3817176 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 3817115 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 3817054 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 3816993 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 3816932 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 3816871 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 3816810 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 3816749 29 93.1 0 .............C.A............. | A [3816722] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3829385-3829113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051398.1 Salmonella enterica subsp. enterica serovar Uganda strain CVM 22436 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3829384 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 3829323 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 3829262 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 3829201 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 3829140 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //