Array 1 959408-955777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012943.1 Ralstonia solanacearum strain IBSBF1503 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 959407 29 100.0 32 ............................. GATTTCCAGTCCCGAGCAGCGCGAGCCCGGTC 959346 29 100.0 32 ............................. CCGTCGCATTCGAGGAGGCACGCCGCAAAGGC 959285 29 100.0 32 ............................. CTGAGCGGCATTTTCTGCCAAAAACCAGAATT 959224 29 100.0 32 ............................. ACCGCACGCGTGCAGGCGCAATTTGACTACGC 959163 29 100.0 32 ............................. ATCAGGCGATGATTTTGTTTCGTGATGCTGTC 959102 29 100.0 32 ............................. GCGTGGGCCCGCGTTGATATCAGCAACGATGA 959041 29 100.0 32 ............................. TCATGCCCCTGGGGCTGTTCCTGATCCTGGTT 958980 29 100.0 32 ............................. TCAGCTAGTTTCTGGTAGCCACTGCCTATGGC 958919 29 100.0 32 ............................. TCGATCAAGCAGCACGCCTGGTTGGGCTAGCA 958858 29 100.0 33 ............................. GAGGTCACCAGATGCGCCATTACGGTCCTGAAC 958796 29 100.0 32 ............................. GATTGACCCAGCCAGGCTCTGAAAACTAAGTT 958735 29 100.0 32 ............................. CGTGTCGCCGATATTGCGGGAAGCCATGTTGC 958674 29 100.0 32 ............................. CGACTGGCCAACGAAACCGCCGCTTGCATCAC 958613 29 100.0 32 ............................. GGTTATCGGACCAGTTGATCTTCACGACTATG 958552 29 100.0 32 ............................. AATAGGCCGCCATCACTGACCGAGGCCGTCGA 958491 29 100.0 32 ............................. ATCGATAACGACACGCGCAATGTCTTTTTCTA 958430 29 100.0 32 ............................. AAAATAAACCCGAATAGATCCGAACAGGAAAA 958369 29 100.0 32 ............................. CCAACTCAACAGCGGGAGGCCGCATGACTCAC 958308 29 100.0 32 ............................. CCATAAGGCAATGTGTCGTGTTCGCAGAGGTC 958247 29 100.0 32 ............................. GCTGCGTGTCCGGAGCATCTTTCGGATAGCGG 958186 29 100.0 32 ............................. CTGCTGCCAATCATAGTCCAACCGCGCGCCCT 958125 29 100.0 32 ............................. TCTGCGGGGCGGATGCATGGCGCGGCTGTGCT 958064 29 100.0 32 ............................. ATAAATTCTCCCGATACGTGGCGGCGATTCGG 958003 29 100.0 32 ............................. TCGTTCGAGGGCGTCGACATCGTTTGGTGCGA 957942 29 100.0 32 ............................. CCGGTGCATACGTTTTGGGACTTGGGCCGCGC 957881 29 100.0 32 ............................. ACGCTGCCGGTCGATGGCGCGGCGGATGTGGA 957820 29 100.0 32 ............................. TGCTGCCGCAATTCTCATCGCCTGGCTCTGTC 957759 29 100.0 32 ............................. ACGTTCCGCAGCAGAATGCGGCAACGATGATG 957698 29 100.0 32 ............................. CGTTTGTGTATTACTCATGTCATGACATCCAG 957637 29 100.0 32 ............................. TTTTGAGGCGGTTTCAATTGATAAATCCATTA 957576 29 100.0 32 ............................. CAATCTTTGCGTGATGGTCGGTTCGGACAACA 957515 29 100.0 32 ............................. CAACCGACGCAAATGGGATCGCACGCGATATG 957454 29 100.0 32 ............................. GGCAGCTCGCTCAGTCTGTATCCGCCATTATC 957393 29 100.0 32 ............................. TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC 957332 29 100.0 33 ............................. TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC 957270 29 100.0 32 ............................. CTGGACGGGTTCATCCAATTTTTCCGGCAGCA 957209 29 100.0 32 ............................. ACGCTGCGGCCGGGCATGGTTCATCGAATGAC 957148 29 100.0 32 ............................. GCGCGGTTGATGGTCGAGTGGTACGACGAATC 957087 29 100.0 32 ............................. TTCCTGCAGCGTGCTGGCAGCGGCGAATGTGT 957026 29 100.0 32 ............................. CCGTTGGGCGTCGTCATTGTGTCGGGGTACAT 956965 29 100.0 32 ............................. AATTTTTCTTTCCGCTGAGGATTTCCTGATAC 956904 29 100.0 32 ............................. TCGTCGCCCGTTGTCCATCCCATCACCGGCCC 956843 29 100.0 32 ............................. CGGCCTCGTGAAAACCTCGCTGTATCGCTTCC 956782 29 100.0 32 ............................. ACTGTTCGTCCGAGCCCGCCCGGAACTGCCCA 956721 29 100.0 32 ............................. TGATCGGTCGGCGGGGGTTCCCCGTGGGTTGA 956660 29 100.0 32 ............................. CAACGCATCGAGCCCTGTGAAGGTCACGAAGC 956599 29 100.0 32 ............................. CGAGAGGAACCAATAGCGACTACTGGGTGGCC 956538 29 100.0 32 ............................. GAGGAGAGATGGGTAAGGAGCTGCAGAAACTG 956477 29 100.0 32 ............................. CGCGACACCCCGGCGATACAGGGGTGACTCTG 956416 29 96.6 33 ............................T TGCGGGCTGGCCGACAACATGTACGGTTGCAGA 956354 29 100.0 32 ............................. GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT 956293 29 100.0 32 ............................. ACACTGCGCCAGCACCGCCCCCCGATTCCACC 956232 29 100.0 32 ............................. GACTTGAACACCGAGGCCTGGGCCCAGGTCAA 956171 29 100.0 32 ............................. CCCTGCCTCAACATCTTCAGCGCTGTAGTACT 956110 29 100.0 32 ............................. GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC 956049 29 96.6 32 .................A........... CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG 955988 29 86.2 32 ............TT....A.......T.. GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT 955927 29 96.6 32 ............T................ ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 955866 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 955805 29 93.1 0 ........................CT... | ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.1 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTCTCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGAGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTATTGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAATCGCCGGTTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGCGGTGGAATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : CCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCAGGGTTGGATCAGTCCGCCAGCGCTGCGCGCGCAGCCGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACATCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCTACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCCCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 971229-968334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012943.1 Ralstonia solanacearum strain IBSBF1503 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 971228 29 100.0 32 ............................. CTGTCGTTGAGGGTGGTGGACCTGACGCCGGT 971167 29 100.0 32 ............................. TCGAATGATTCGTCGGTCACGTTGGGTGAGCA 971106 29 100.0 32 ............................. CTTCTTGACGTGGTTGTCTACGAGGGACGGGT 971045 29 100.0 32 ............................. ATACGACGTGCCTCTGAGTTTGCGGATGCCCT 970984 29 96.6 32 ............................A ACTCGCCACCCAATGGCGGCTGCAACACTATA 970923 29 100.0 32 ............................. CGTAAATCCCATGTCTCTTTGAGGCGATGTTG 970862 29 100.0 32 ............................. GAGGTCACCAGATGCGCCATTACGGTCCTGAA 970801 29 100.0 32 ............................. CCATCTCACGGTATTATCCTTAACGCCAAGCT 970740 29 100.0 32 ............................. CCAATATGCAGCAGATGCGGCCAAACTATTGG 970679 29 100.0 32 ............................. CCCGCGCCCTTGCCGTAGGCGCCCCAGTTGGC 970618 29 100.0 32 ............................. TTTCTGATAAAACCACGGTTCTATGCATCCCC 970557 29 100.0 32 ............................. TAGGAGCGGCGTAATAACTGCATCTCGCGCCC 970496 29 100.0 32 ............................. GGTTGCTGTTGTGTGGCTGTATTGCCCATATC 970435 29 100.0 33 ............................. TCTGCGGCCTTGAACAGCAGATCACCGGCTACC 970373 29 100.0 32 ............................. CCTCCCCTCGTCATCGGCAAGAGTCCACATCT 970312 29 100.0 32 ............................. GTCCTACCGTTCCCTCCCTGCTCCCCAATGGT 970251 29 100.0 32 ............................. ATCGGCGTGTTCACGCCGGAGCACAAGCAGCT 970190 29 100.0 32 ............................. CCAGTACGGCGCCTGGGGTGCTCGTCGCAACT 970129 29 100.0 32 ............................. GTCACGACCTGCACGGTCTCGAAGGACGCGGC 970068 29 100.0 32 ............................. TGATCCTAGGCCGCTGCCAGAACCACCCTCAC 970007 29 100.0 32 ............................. CCAGCTCCCTTGCCGTAGGCGCCCCAGTTGGC 969946 29 100.0 32 ............................. CGGGCCGGCCACGACAAGGCTATGTTGGATGC 969885 29 100.0 32 ............................. CGCCATCGACCGGCAGCGTCTTGATGCTCGGC 969824 29 100.0 32 ............................. AGCAGGACATGCAGCAGAAGATGGCTCAGATG 969763 29 100.0 32 ............................. CTGCCGGGCACGCTGTACATGGCGCGCTACCC 969702 29 100.0 32 ............................. ATGACCACGTGGTTGAACGGCTAACGTCAAAC 969641 29 100.0 32 ............................. TCGACCATCGCAAAGAAGGGTTTCGACAAACC 969580 29 100.0 32 ............................. ACATGAATGGCATTTTGAACATGCTGTCTGCT 969519 29 100.0 32 ............................. TCCTCGTTGGTGCCGCTCTCTTCCTCGTGGTC 969458 29 100.0 32 ............................. CCAATCACCAACCGGCGCGGGGTTGGTGCGCC 969397 29 100.0 32 ............................. AAATATCTGAAGCAACTGGGCCTGGGTGCTGC 969336 29 100.0 32 ............................. ACGATGCGGCCGGGCATGGTTCATCGAATGAC 969275 29 100.0 32 ............................. GTCGGCAAGCTGCCGTTCGGCGAGGACATGTT 969214 29 100.0 32 ............................. AGATCAAACTGTGCCATGCCCTGGGAGGTTTG 969153 29 100.0 32 ............................. ATGAGTACCTTGCTGCGTCCAGCACTCGCAAC 969092 29 100.0 32 ............................. TGTTGACATTAGGGGAGTGGCCGGGAGCTGAT 969031 29 100.0 32 ............................. CTCGCTTTGAACATGTGGGAGAGCGAACGCAG 968970 29 100.0 32 ............................. CCGCCTAATCCAGGCGATGCGATCCATACCCC 968909 29 100.0 32 ............................. TACTTGATCGATACTGACCAGCTCTAGCCTCG 968848 29 100.0 32 ............................. CCTTTTCCGATACGGGCAGCTAGTGAAAAATG 968787 29 100.0 32 ............................. CAGCAGCTAGTGCAGGTGCCGGGGACGTTCAT 968726 29 100.0 32 ............................. GCTTCATATTCATCGGCGGGGTGCATGTCTTC 968665 29 96.6 32 ........T.................... GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC 968604 29 96.6 32 ............C................ CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG 968543 29 96.6 32 ......T...................... ACGGGTTGGGCACCGCTGTATGAACACTGGCT 968482 29 93.1 32 .............A..T............ GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC 968421 29 79.3 30 ..A........TCA..........TG... CTGCGCCAACAGCTTACCGTTGATCGTGCC 968362 29 75.9 0 .C..C......A..T........C.G..T | ========== ====== ====== ====== ============================= ================================= ================== 48 29 98.6 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACAGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGATAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGAGCCGTTTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : TCAGCCAGCCCCATTTCCTCGATCGTTTGCAGGAAGATGAAGAACGTTCATGGACTAACGCCTTTGCTATCTCATTTGGATCATTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTGTGATCGCCCGTCCGGGAGCGAGAAAAGATAGAAATTTCCTGACATCAAGAAAAGGCATCAGGCTGATATGGAAAAAGGGGCGGCGCGATACTTTGCTTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCCGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGATTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGACCGATCTCGTCTCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //