Array 1 109646-107966 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQZ01000001.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3989 NODE_1_length_586116_cov_4.72517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109645 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 109584 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 109523 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 109462 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 109401 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 109340 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 109279 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 109218 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 109157 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 109096 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 109035 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 108974 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 108912 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 108850 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 108789 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 108728 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 108667 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 108606 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 108545 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 108484 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 108423 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 108361 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 108300 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 108239 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 108178 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 108117 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108056 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 107995 29 93.1 0 A..............A............. | A [107968] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126942-125816 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQZ01000001.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3989 NODE_1_length_586116_cov_4.72517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126941 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 126880 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 126819 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 126758 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 126697 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 126636 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 126575 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 126514 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 126453 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 126392 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 126331 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 126270 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 126209 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 126148 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 126087 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 126026 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 125965 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 125904 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125843 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //