Array 1 35034-35574 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUYB01000028.1 Thiothrix eikelboomii strain ATCC 49788, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 35034 28 100.0 36 ............................ AACTAAGACCGCTACTGACCGAACTCACCGATTGGT 35098 28 100.0 37 ............................ AGAAACTGTATCCGGTTGGTGAGCGCTGCAATATGAC 35163 28 100.0 36 ............................ TATAGCAGCATCAATGGGGTCAAGTCCTTTTTAGAT 35227 28 100.0 37 ............................ TCGAATGAATGCCGCAGTTTGAGAATATTCCCCATGT 35292 28 100.0 36 ............................ ACCCAGTTGATCGCATGGGCAGGTCGCAGCAATAGC 35356 28 100.0 36 ............................ GGTACTGAGGCGAGCCGAGGCCGCATTGAGCTTGCT 35420 28 100.0 36 ............................ GATGAAGCGAAGCTAAAACTAGCTCGCGCTGAAGCA 35484 28 100.0 35 ............................ ACACCATGCGCCGCGCATTCGGAGAAAACCACAGT 35547 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 9 28 100.0 36 CTCATAACCCCGCATGGGGATTCGTAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTC # Right flank : CCCCTGATTTTAGTGCATTTTGAGCCAAATGCCGCTTGATCAGGAGCATTAAAACTAGCATAAGTAGTAGATGTAAGTACATCAACGGGTAGGTTTAAATACTTCATTGCAGGTCGAAGTACCTTATAAAACCGTAAAATCACGGCGATGATCCTCTAAAGGTGAACGTTTTAGCTCTCCCTTACCTGATTCATGTTTAGATAAAAGATACACATCGACATTCTGCCGATTGGCACAGCAAATTTCAGTCACCTTATCCTCTGGAATCATCAATTGACTCAACTCGCAACGTAATTGAATCGCCTGTGCTTCGGTAATATCTCCCGCAAACACCGAATACTGATTATGATTCAAATAGCGCCGCAATAACTTCTTAAATTTATTAGTGCGCTTAGCTTCCACATCATAGGTCATCAGCATAAACATCTATACCCTCCTTTTAAACGATTCATACTCACTCACATCGAGAACCTCACGCTCCAACATCAGTGCCTCTTTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCGCATGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 13058-8950 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUYB01000033.1 Thiothrix eikelboomii strain ATCC 49788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13057 28 100.0 32 ............................ ATCATCGACATTTATTGGGTTATCGAGGCAAT 12997 28 100.0 32 ............................ TTATCTTTTTCGCTAGGTTCATCCATACTATT 12937 28 100.0 32 ............................ GATAATAATAAGAATGATGACAACGGTAGCTA 12877 28 100.0 32 ............................ TGATACCAGAAGCAGCTGTTCAAGCTGCCAGT 12817 28 100.0 32 ............................ GTTATTATTGCCGCGCTACTTACCTTGCTGAT 12757 28 100.0 32 ............................ ACATCCGGCAAGTAGTCGGAGTTATTGAAGTC 12697 28 100.0 32 ............................ TTCACCCGATGCTATATCAGCACAGACAAGCC 12637 28 100.0 32 ............................ CTCCGCTAAATCTCGCAGCATGTCAATACTTA 12577 28 100.0 32 ............................ TTAAAGTATCGCGTTAATAATGGAGCTGTATC 12517 28 100.0 32 ............................ AGCTTTACAAGGGCGTATTTGGTGCTGACTTT 12457 28 100.0 32 ............................ AAGGAGGCCAACGGGCAAGGCGCAATGCGAGC 12397 28 100.0 32 ............................ ACCGGCCCGCATGCATTCATGGCGCAGATTTG 12337 28 100.0 32 ............................ GATACCTTATAAGCGTGGGCGCGTGGGTAAAG 12277 28 100.0 32 ............................ TTTAAGCGGAATAGAAACGTATTGAAAAACTC 12217 28 100.0 32 ............................ CGTAAGCATGGGCTGGATTAAGCATTGCACCT 12157 28 100.0 32 ............................ TTGCTAATCCCGTACTTATCAGCAAGCTCCCT 12097 28 100.0 32 ............................ ATCGTTTCGTGGGCAACGGCGTTATTGACGGC 12037 28 100.0 32 ............................ TGATGAATGTATAATAGACTCAATTTGGGTCT 11977 28 100.0 32 ............................ GCTAGCACGCTGATGAGCGGGGATGCCGATTT 11917 28 100.0 32 ............................ ATCACCAGCGCCACAAAATAAATATGCATGCC 11857 28 100.0 32 ............................ ATACCCAAGGCAGCGGCAATCGCTTTGCGTCC 11797 28 100.0 32 ............................ CCGCTGACGCTCACGAATGGCTGCAATGGATA 11737 28 100.0 32 ............................ TCAGCCTCATAAATGAGCTGCCGATCATTTTC 11677 28 100.0 32 ............................ TTTGACTACAGTGCCTGTGGCTGGGGGGAGTA 11617 28 100.0 32 ............................ ACCACTCGACGAGCCGCCTGCGCTCGTCGAGG 11557 28 100.0 32 ............................ ATTCCAGTTAACATCATTAACTAACGTATTGT 11497 28 100.0 32 ............................ AGACGGCTTAGTCTCAACCTGCACTAATACAC 11437 28 100.0 32 ............................ ACTTCAGGCGGTACCGGTTTGCTTTGTACCAG 11377 28 100.0 32 ............................ ATCGGGAAGTGTTGCCAGCACTCCAACAAAAC 11317 28 100.0 32 ............................ TCAAGATAAGCATTTGAATGGCAGAACCAAGC 11257 28 100.0 32 ............................ ATACGGATGTTTCCAAAGGTATTGGTAAATAC 11197 28 100.0 32 ............................ TCAAGATAAGCATTTGAATGGCAGAACCAAGC 11137 28 100.0 32 ............................ ATACGGATGTTTCCAAAGGTATTGGTAAATAC 11077 28 100.0 32 ............................ CACTGCTTCTTAGCGCTATCTATCGCGTCAAT 11017 28 100.0 32 ............................ TCGACATTGGCCCAACCATCGTTAGGAATGAT 10957 28 100.0 32 ............................ GTTGCTGTTCACGATAGTTTCCTCTTTCATCA 10897 28 100.0 32 ............................ TCTTTCCGCTGAACCCTTCTCCTTTTTCCCAG 10837 28 100.0 32 ............................ GTCACAGAGCGTGTGTTCCTCACGCCTTTTAT 10777 28 100.0 32 ............................ ACTACATGGGTCTAAAATTCTAGCTGCTGCTG 10717 28 100.0 32 ............................ TATCAAATTGATAGTATAAAACAATCAAAATG 10657 28 100.0 32 ............................ GAAGATTAACGATGGTGTCTGTAGCAGTATGA 10597 28 100.0 32 ............................ ACTAGCTTGTAAACAGTACGACGGGATAGGTC 10537 28 100.0 32 ............................ TGCAAAGACGATTACGCAAGATATGAAGATGC 10477 28 100.0 32 ............................ CGTAAAAATCGGCGATTTTCTTAAAGAGTCTG 10417 28 100.0 32 ............................ TCATTGAGGAGCACCACGCGCCTTTAACGCTC 10357 28 100.0 32 ............................ ACCGCTGTAGGCCACACCGTCAAAGCGCTTAG 10297 28 100.0 32 ............................ TTCAAATGTACCCCCGCAATCTGATGCGCATT 10237 28 100.0 32 ............................ CTTGAACGCTACCGCGTGGAAGAAATGGCAAT 10177 28 100.0 32 ............................ GTACCAGCAATGCGCTTGTCGCGCTCAGCGTT 10117 28 100.0 32 ............................ AAATTCGGGGAGCAAAAAAAGAGGTGGTGCAA 10057 28 100.0 32 ............................ GTTCCACGTAGTGCGTAAGTAATCAAGTATGC 9997 28 100.0 32 ............................ ATTAGCTAAACACCAGTGAGCGACCAGCGACC 9937 28 100.0 32 ............................ ATTTGCATAATGCTTGGCTGGTCGCCAAGCGA 9877 28 100.0 32 ............................ GCCTGTTAGCCCACTAAATGCAACATAATCAT 9817 28 100.0 32 ............................ AACTCAAAAAAGACGGCGATCAAACCTTCGTA 9757 28 100.0 32 ............................ AGAAGCAATTATCCTATTGGGTGCTTGCCAGC 9697 28 100.0 32 ............................ AATGACATTAAAACCATTCTTTAAGGTTAAAC 9637 28 100.0 32 ............................ TTTCAGCTCCACGCCGGTGACGCGATACACGA 9577 28 96.4 32 ...................A........ GCACTCTCTCCATACTGCACGTAAAATACACC 9517 28 100.0 32 ............................ TATGGCACATTTAACGACGTGACGGGTTGCAT 9457 28 100.0 32 ............................ TTGCTGTTGTTCTGGTGGAACGTCAGGACAAA 9397 28 100.0 32 ............................ TTCAAATGTACCCCCGCAATCTGATGCGCATT 9337 28 100.0 32 ............................ AGTAGCTTTAGTTGATGAATCCAGCATACTTA 9277 28 100.0 32 ............................ AAGTTAAAACAAGAAGTTTAGGAGGTTGAAGA 9217 28 100.0 32 ............................ AAACCAGATGCGCTAGTCGATTTTATTACTCA 9157 28 100.0 32 ............................ GCAACGTCGAAGCAAAACAGTTTGCTCATTCA 9097 28 100.0 32 ............................ TATGGCACATTTAACGACGTGACGGGTTGCAT 9037 28 100.0 32 ............................ GCCTTGGGCGCTATGGGTTGCGCTGTTTGAGC 8977 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 69 28 99.9 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TTAGAGCGGTTGCACTTAAAAGCGCAACTACGACGGTTGGAGGATTATGTCCATCAGCGCCAAAGCTCGATTGAACGTCCGAATCTAAGTTTTTCAACCTTTCAACGAGTACATGTTAAGTCGTCGGTAGAACGCTTGATTCGCCGTCGTATGCACTCTTTGGGTGAATCCTTAGAACAAGCTCAAGCCGCATTCAAGGATTTTGAGGAAGCACGTAGCGATTTGCCGTTTATACATTTGCATAGCCATAGCAGCGAACAAGCTTTTCGTTTGTTCATTCAGAAACGGCCAGCCTCTAAACCAGACCATTGGCAATTTAGCTCGTATGGTTTGAGCACCACCGTGGGTGTACCGGATTTCTAACCGCTACCCCAATTTTGGCAACGTCAAAATCGCTCTTTAACAATCAAACACTTAGCGAAACGCTTAAAAAAAGGGGTAAATACTAAAATTTACCTTTTTTTGTTTGAAAAACGGGGACTTATCGCGTTATAGTCTCT # Right flank : ACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 179-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUYB01000039.1 Thiothrix eikelboomii strain ATCC 49788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 178 36 100.0 32 .................................... GATGGACTCAGCAGAGAGCGATATAAACCGCT 110 36 100.0 35 .................................... AATGAAGGGGCTGAGGTTAGAGGAGGTGGTCTTAG 39 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 3 36 100.0 34 GTTTGAATGTTTCCCTGTTTGAGAAGGGATTAAGAC # Left flank : GTGACTTATGATATTGCTGAGCCGAAACGGTTACAGCGGATTCATCGGTTTTTGAAAAAGGTAGCTTTGCCTTTGCAGTATTCGGTGTTTTTATTAGAGGCGGATGCTCAACGCATTGCGCAGTTAGAACAGCAGTTGGCGACGATGATTCATCCGCGTGAGGATGATATTCGGATTTATCCTTTGCCGAATCAGCCCGATTGGTGTGCCATTGGTCGTCCATTATGGGATGAGGGAATGTTGTTAACTGGCATGCGCTTGCCTGTAGCGGCGCAGTTGAAAGCAGAAACTTTTTGGGATGAGCATACACGCGCATTGACCCGCTCAAATAGCTAGCGGTACACTAGGGAGTGTGTTGGCTTCTTTAACAATTTAGGGATGATTTTTGTAGGATTTTTATGCATTGCTTAAATTTTTCTCATGCAAACTTTTTATACAGTGCATTTCCTGCTAAGGGCCTCTGTAAGTTGTTGATTTTAAAGGCTCGCCAGACACGAGCG # Right flank : CGCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATGTTTCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 105632-105870 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUYB01000015.1 Thiothrix eikelboomii strain ATCC 49788, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 105632 36 100.0 32 .................................... GATGGACTCAGCAGAGAGCGATATAAACCGCT 105700 36 100.0 31 .................................... AACGCAGGATGTTGTTATAGACAAAACGCAC 105767 36 100.0 32 .................................... ATGATGTCCTCGAACGTGGTTTCAAAATCGTC 105835 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 4 36 100.0 32 GTTTGAATGTTTCCCTGTTTGAGAAGGGATTAAGAC # Left flank : ATGATGGGCTTGGTGCGACGGTTATCTTTGTTGAGTGCTTATCATGGGCAGGAACGGTTAACGGTGGATTTTAAGGCTTTACGCACGCAAGCACAGGCTTTAGTGGCTGAGGCGGCTGAGTTTAAGCGGTTTGAGTGGACGCGGTATTCAAGTCGGCAGCAGTGTTTGATTGGGATGGATGGTTTGCTGGGGCAATTTAGTTTGACGGGGGCTGAGTGGCAAGTGTTTTGGCCTTGGTTGTGGTGGGGGCAATGGGTGCATGTGGGGAAAGGTGTAGTGATGGGGCAGGGTCAATATCAGTTGGAAGATCTCGCTTGACCGATTTTTTTGCACGCACTACACTGCGAGATGTGTGGTGAGTTCTTTAACAATTTAGGGATGATTTTTGTAGAATTTTTATGCATTGCTTAAATTTTTCTCATGCAAACTTTTTATACAGTGCATTTCCTGCTAAGGGCCTCTGTAAGTTGTTGATTTTAAAGGCTCGCCAGACACGAGCG # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATGTTTCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 303240-299258 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUYB01000002.1 Thiothrix eikelboomii strain ATCC 49788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 303239 28 100.0 32 ............................ ATCTGGGTCGTCGGCACTACGCATGAAATGAT 303179 28 100.0 32 ............................ GATCTAGTCCAGTGCTAGGCATATCTTCGTAA 303119 28 100.0 32 ............................ TACAATCGCCAGCCTTTGCCAGCTTTGTGTAC 303059 28 100.0 32 ............................ GCTGATCGGTTCCCAGATAAATTCTGCAAATT 302999 28 100.0 32 ............................ ATAAGTCAGCACCGCGCAAGTTAGCATCGCTC 302939 28 100.0 32 ............................ GTAGCGCCCACTGTGCCAAGCGCGGTTTTAGT 302879 28 100.0 32 ............................ ACCGCAAACATTAGCAATGCCCCGCCGACATA 302819 28 100.0 32 ............................ ATCTATAGATGCTAGCATAATGTTATGCTTAT 302759 28 100.0 32 ............................ TATAAAGAAAAATTAATAATAAAATTAGACGA 302699 28 100.0 32 ............................ TGTCAATATATTTTTTTTTAGTATATTAGCAA 302639 28 100.0 32 ............................ CTTATCTAAGTATTACTTACGTGCTTTTAAGC 302579 28 100.0 32 ............................ TCCGAGCAGCCCGGAGACGGGCCGTCCGGCCA 302519 28 100.0 32 ............................ TTTAGCTAAATCTAATAACACAGACTCATCGG 302459 28 100.0 32 ............................ AACCATGCTAAACCTTACAATAAAGGCAGCCA 302399 28 100.0 32 ............................ AAGAAATCAATGCATTAGACGCTGATGCTCTT 302339 28 100.0 32 ............................ ACTCTCTCACGCCCGCATCTATTGTAATGTTG 302279 28 100.0 32 ............................ GCTCAAGTCAGCATCGCGCAAGTCAGCATCGC 302219 28 100.0 32 ............................ ACAGATCACTGCTGAGCACCACTGGTCAGCTC 302159 28 100.0 32 ............................ TTATTGAAGGTGGGTACAATATGTTGCCTTGG 302099 28 100.0 32 ............................ CACAAGCTGCAAGGCGAGCCAGAGAGTGAGCC 302039 28 100.0 32 ............................ GCCGCAATGTCGAGCAGTGCGTTGCGCTGCTC 301979 28 100.0 32 ............................ ATCATTAAGTCAATAACCTCTAGCGCCTCAGC 301919 28 100.0 23 ............................ TCCAACGNNNNNNNNNNCTCAGC Deletion [301869] 301868 28 100.0 32 ............................ TCCAACGCTTGGAAGGCCACTTCGCGGGCTTC 301808 28 100.0 32 ............................ TTTTCGAAGGACACCGCAAAGTCATTCTGGTT 301748 28 100.0 32 ............................ AGAATAGGCTTGGATGATCGCGGCAAACTTCG 301688 28 100.0 32 ............................ TACATCCAACGCCCGCGCCAACCACTGTTAAC 301628 28 100.0 32 ............................ GCTGCTGGCTTGCTGGCCGCTGCTGGCTTGCT 301568 28 100.0 32 ............................ ATTTAAACCATGTCGTCAATGACTTGAAGCCA 301508 28 100.0 32 ............................ TCCTGTTTTTAATTCCTCTTCTTCTTCTTCTT 301448 28 100.0 32 ............................ TTCTAGCCTTTAACAAACCGCTGGAAGCCAGT 301388 28 100.0 32 ............................ AATTGTATGCAAAAAGAAAGTTTATACTCTCT 301328 28 100.0 32 ............................ TTTGAAAAGGACAGTGGCAAGACGCTTTGGAA 301268 28 100.0 32 ............................ CAGTGCTGCAAGTCCATCCTGTACAGTCGCTA 301208 28 100.0 32 ............................ TAACGTGGTACGGGCTATCCTAGACGAAGTAC 301148 28 100.0 32 ............................ TCCACGCCTGCTAAGACATATCAACAATGCGG 301088 28 100.0 32 ............................ TGCTGCGATTGCAGCGATCCCTCAGAACGCAC 301028 28 100.0 32 ............................ AATCCCCGAACTGACCATACAGTGAATCTAAT 300968 28 100.0 32 ............................ ACAAAGAGTAGAACAGGATTGTTCGGCAGAAA 300908 28 100.0 32 ............................ TGTCGGACTCAAGTCCGTGACCGTGCGCAATA 300848 28 100.0 32 ............................ CACGGCACATCGCCATAGTCTTGTGCATTATT 300788 28 100.0 32 ............................ CACAAAAAAAGCCAACAAGGAAAGACAATTAT 300728 28 100.0 32 ............................ GGACGAAATTCTTGCAATAAATGAAGCGTTTA 300668 28 100.0 32 ............................ ACCCACCTTGGCAGCACGTTGACTGGGTTGCC 300608 28 100.0 32 ............................ CCGCCTAGAAATCGAAAGCAGTTTTCGGTGAC 300548 28 100.0 32 ............................ AATAGCCTCTATAGCTGTCTAAACGGCTTTTA 300488 28 100.0 32 ............................ ATCAATTCGGCTTCAGTGGTACGCAATCAGTA 300428 28 100.0 32 ............................ GTGACGGACTTCAGTCCCGCAGGTAGCGTTAC 300368 28 100.0 32 ............................ TTCATAGTCAAACTGTTTAAATTGAGTAGCTG 300308 28 100.0 32 ............................ AATATGGCGACAAGTGCTGTTTACGCTGCTCC 300248 28 100.0 32 ............................ CGTTCGGGAGTCGTTGCAATGATGGATACTAT 300188 28 100.0 32 ............................ AGTTGATAAAGGAGGTTTCTTAAAACCGCCCA 300128 28 100.0 32 ............................ GGATTTCGAGAATATTTTCTTGTCCGGCAATG 300068 28 100.0 32 ............................ TGAAAGGGAAGGGGTGAATATGGATTTGGAAT 300008 28 100.0 32 ............................ TACACAGAAATAAAATTCTTCTCACTGGGCTG 299948 28 100.0 33 ............................ CAAGAATAGGCTTGGATGATCTTGGATCAAATC 299887 28 100.0 32 ............................ AGGTCCGACTCGTCTTGCTGTAATATCCAGCC 299827 28 100.0 32 ............................ ATTCAAAGGTGTCGTGGACGCATTGGCAAATA 299767 28 100.0 32 ............................ TGCTAGATGCTGCGCTTTGTTACTGGAGTCAG 299707 28 100.0 32 ............................ ATGTCCCGATTTCTAGGTTATCGAGTGTCGGG 299647 28 100.0 32 ............................ TAGCGGCTTAAATTTTACATTGAAACGATAAT 299587 28 100.0 32 ............................ CCTTGACTCATAAGCTATTTTTCTCGATGAGT 299527 28 100.0 32 ............................ TAGCCAGATTGCTTCTTATGTGCGTCGTCTAA 299467 28 100.0 32 ............................ ATTCCGACTCCGTTCCGACAAAAGAGTTGCAT 299407 28 100.0 32 ............................ ATTGCAGCACGTCGGTGAGTATTTGTTTTCCG 299347 28 100.0 33 ............................ CGCCAGCGTAAGCTACGCCGCTAAAGCGCTTAG 299286 28 89.3 0 ....................A....G.T | A [299261] ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.8 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCGC # Right flank : GTTTAATCGGTCTTCACTGTAGGATTATTGGGTTAGCTAAAAAAAATTATCCAAAGCGCTTAGGGTCTAGGCCTGATAAGGATTGGCGAACTGAAAATCTCGTGCTTTAATGTACTAAATACAGGAGAGGATCACTATGCTCAATGAACAACAACAGACCCAACTTTTAATCAGTCAAGTGTATCAAGAGATTGTACTAACCGATCCGGCGAATGAGGGCGATTGGCTTGCCTTCGAGCGGCGTTTGCAGCGTTACCTTCCTGCGCTCACCTTAGAGTTGAGTTCGGTGTATGGTGAGCGGGATGATTTTCTGAGTTTTCTCAAAGCGCTATTAACAGCGGCTTATCACAGTTGGCAGGCACGCTCCGCTGCGTTAAAAGCACAAGATACTGAACATGAGCAGCACCCTGATTGGTTTAGCTCAGAACAAATGGTGGGCGGGGTGTGCTATGTCGATTTATTCGCGGGTAATCTACAAGGAATTATTCAAAAAATTCCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 310223-309955 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUYB01000002.1 Thiothrix eikelboomii strain ATCC 49788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 310222 28 100.0 32 ............................ CGTCCTATCGTGATGGGGCTTACCATCATCGA 310162 28 100.0 32 ............................ TGTGAATTAGGTATTGAAATAGCAAGGTAAAT 310102 28 100.0 32 ............................ GGATCAAAACTTATCGCTGCATTGTCAATTCC 310042 28 100.0 32 ............................ TCTAAATTAAGCGATGCACAGCGCTATAAAAC 309982 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GATTAGCGTCAATGATCCTATTGCAGTGCGTTCGGCGGTATTAAATGGGTTTGGTATAGCACTCGTACCTGACCCTTATTGTAGGCAGCATCTAGCGACGGGCGAATTGGTTCGCGTCTTTGAGCATATTGAGTTTGAACCGTCGGTGTCGGTGATTTCTGCGATTTATCCGAGTCGCCGCTTGATTTCGAATAAAACGCGCGCCTTTTTGGATTTTTTAATTGAGCTGTGTGAGCGTATTTAAGCCAAAGCCAAGCCTACCCGCCTAGGAAGTGTGGCATCTCACCCAACCGTTGTGGCAAGCATTAACAGCTCGACCATCGTTTAAGTATTATGGTTTTAGTAGTATGCTCAAATAACTAATTGCTACCCCAATTTTGGCAGCATCAAAATCGCTCTTTAACAATCAATGACTTAGCGAACCACTTAAAAAAAGGGGTAAATGCTAAAATTCCCCTTTTTTTGTTTGAAAAACGAGGACTTATCGCGTTATAGTTACT # Right flank : TCAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //