Array 1 158115-158572 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRL01000010.1 Pseudomonas aeruginosa strain DUN-001-3B IPC984_10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 158115 29 100.0 32 ............................. CGACAGGTACGACTGGCGGTTGATCTCGATAG 158176 29 100.0 33 ............................. TGAACCCATCCACCACCGCCGAACCGTCCTGCA 158238 29 100.0 32 ............................. GGGTTCAACGACTGCGGAAACCGTCCGGCACC 158299 29 96.6 32 ..............T.............. CAGCCAGCTTCGGCTCTCTGCATTGTTGAGCT 158360 29 100.0 32 ............................. CCGGCCAGCCAGGCCGAGGGCGCGCTGTTGTT 158421 29 100.0 32 ............................. AAGGCTTCGGCAGCCTCCTTTGATATCCGCGG 158482 29 100.0 33 ............................. GCGGCCGAGGACCTCGACAAGCTGGTCGACTCC 158544 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.2 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CCAGCTCGACAGCGCGCGGAACTTCATCGCCGCCTATGCCTTGGAAGGCGAGTGGCTGCCGAGAGAGCGGGTCCATGGCTTCGGGGCGCTGATTGGCCGACCCTTGGGGCGTCTCGAGCGGTGGATGGTCTCCATCAACTACAAGGGGGAGGAGCAGTACAGCCCGATCCCCAACGATGCCTGTGTCCTCAGCCATCGCGACCTGATCAAGGCGATGGTCGCGACTCCCGGCGACCTTCCTGTCTCCACCGACGAGATGTTCGAGCTCGCCCAGGCGGCGCTGATGAACCTCAAGAGCCGCGCCACAGTGCAACAGCACCAGTTGCGGCAACTGCGCCAAAGGGTCAGGCAGTGAATGCCCCATCGGCATCCTCTGAGCACCTCAAGATGGAGCACGCTGGTATAAATGGGGGCCTTCCGGGGTAGCGCGAACGCCCGTTTTTATCGGTGGAGTTTTTCCTGCTATTTTTCTTATTTCAAAACAATGATATACGGAAAGT # Right flank : TGCGCTGCAGGTGATCCGCCTGACGCTGCGCAAGTGCCCCTACTGATGCGGGGGTTACCTCATGAGCGCAACCCTGGCTGGCTTGGGGCAGTAGGGGATGGCCGTAAACGGCATGGAGAGGGCGCCTTCTGGCGCCCTTTCTGTTTCTGCCAGATGAGCCCTGGGTTTTGATGTTGGCCAGGTGATGGTAGATTGCGGGCTTTTAGGAGGCTGGATATGGAAAGCGGCTCTTCTTTATTGCTTGGTTTTGTCCTTCTGATTGGAGGTGTTGTCCTCTACTTTTTACCTGCAATAATCGCTGAAAATAGAAAGCATCATAATAAAGGTGCGATAACTGTATTAAATGTGCTTCTCGGATGGACCTTAGTGGGATGGGTTGCCGCTTTGGTTTGGGCTGCGTCTGCCACAAGAGTGAGTGAGAGAAACAATTCTGTGGGTCGAAATAATCTAAATCTGCAAGCTCAAGCAAGTGATGTTCGACCATGTCCGTATTGCGCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55257-56424 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRL01000016.1 Pseudomonas aeruginosa strain DUN-001-3B IPC984_16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55257 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 55317 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 55377 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 55437 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 55497 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 55557 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 55617 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 55677 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 55737 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 55797 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 55857 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 55917 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 55977 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 56037 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 56097 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 56157 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 56217 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 56277 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 56337 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 56397 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 66837-64949 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRL01000016.1 Pseudomonas aeruginosa strain DUN-001-3B IPC984_16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66836 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 66776 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 66716 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 66656 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 66596 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 66536 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 66476 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 66416 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 66356 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 66296 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 66236 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 66176 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 66116 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 66056 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 65996 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 65936 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 65876 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 65816 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 65756 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 65696 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 65636 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 65576 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 65516 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 65456 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 65396 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 65336 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 65276 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 65216 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 65156 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 65096 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 65036 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 64976 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //