Array 1 18425-18262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYO010000006.1 Bacillus pumilus strain 7PB NODE_6_length_320115_cov_53.7731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 18424 32 100.0 33 ................................ ACATGCCTTGGCTGCTGCTGAATTACTCTTTTA 18359 32 100.0 34 ................................ ATATCTCCGGCAGCATCAAAAAATGAAAATCCTT 18293 32 75.0 0 ...................AA.A...CTC.CA | ========== ====== ====== ====== ================================ ================================== ================== 3 32 91.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GAAATCTAGATCAAATTGTTCATTGACCTTTCTACGCTGACGTTGCACTCTACATGAGTGCGTGGATTGAAATCGCCTTTAAATCGTCTATAATCGTCTTATAAAATAAGGTCGCACTCTATATGAGTGCGTGGATTGAAATTTATCAGTATCACCAAACAACATACCATAGCCTGGTCGCACTCTACATGAGTGGATGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGAGCATTTCCTGAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : GTTTCTTAAATTCAAGTACCTATCCAGTTCAAAATCTACACAAATGATTAATCAAAATAATGTACTTTTCCCCTAAATCCAAGCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATATTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAACGTGTCTAAAATGACAACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAAT # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19087-18716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYO010000006.1 Bacillus pumilus strain 7PB NODE_6_length_320115_cov_53.7731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 19086 32 100.0 36 ................................ CAATACTTTTTTGATATGGGTGATTGCTTGAACAAA 19018 32 100.0 35 ................................ ACTCATTAAGTTAACTTTAGAAGTGATGCCTTGTG 18951 32 100.0 36 ................................ CTAGATCAAATTGTTCATTGACCTTTCTACGCTGAC 18883 32 93.8 37 ..T........C.................... CGCCTTTAAATCGTCTATAATCGTCTTATAAAATAAG 18814 32 100.0 34 ................................ TTATCAGTATCACCAAACAACATACCATAGCCTG 18748 32 87.5 0 ...........C.......GA......A.... | T [18719] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 96.9 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CGCGATAGTCGCACTCTACATGAGTGCGTGGTTTGAAATAAATTTTTCAAATAACTTTCTTCATCGTAGTAGTCGCACTCTACACGAGTGCGTGGATTGAAATTCTGTAATTGGCAAAGGAATTAAAGAACATGAGTGTCGCACTCTACAAGAGTGTATGGATTAAGGTAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGAGTGATAAACATGACTCTAGCTCAGTAGTCATGTTTTTAAATGAATTCAAAGTTGTTGATGAAATAATGAAATAAGTACCTTTAGAACAATAGTTTCTAATTAAATAGGATTGATAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTAGAACATTCGCACCGTTTCATTCGACAAAAACGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGAGCATTTCCTGAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATACATGCCTTGGCTGCTGCTGAATTACTCTTTTAGTCGCACTCTACATGAGTGCGTGGATTGAAATATATCTCCGGCAGCATCAAAAAATGAAAATCCTTGTCGCACTCTACATGAGTGAATAGATCTCACAGTTTCTTAAATTCAAGTACCTATCCAGTTCAAAATCTACACAAATG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 19778-19419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYO010000006.1 Bacillus pumilus strain 7PB NODE_6_length_320115_cov_53.7731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19777 32 100.0 34 ................................ TTTGGCTTGTGGGGTACATTGTAGATGTATGAAA 19711 32 100.0 35 ................................ GACCGTGCTTAACGGTTTTACCAAGGAGGACATAC 19644 32 100.0 33 ................................ GTGACGAGAATGTCGGCAAGATTAACCGCGATA 19579 32 93.8 32 ...........C............T....... AAATTTTTCAAATAACTTTCTTCATCGTAGTA 19515 32 93.8 34 ...........C.C.................. TCTGTAATTGGCAAAGGAATTAAAGAACATGAGT 19449 31 78.1 0 ...........C.A.....TA......-..GG | ========== ====== ====== ====== ================================ =================================== ================== 6 32 94.3 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GCTCATGATGCCTGAGACAGTAAAGGGAGCATTTAAAGTAGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTGGATAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATCCATTTCTTGACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCTTTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGAGCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATTGCA # Right flank : TAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGAGTGATAAACATGACTCTAGCTCAGTAGTCATGTTTTTAAATGAATTCAAAGTTGTTGATGAAATAATGAAATAAGTACCTTTAGAACAATAGTTTCTAATTAAATAGGATTGATAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTAGAACATTCGCACCGTTTCATTCGACAAAAACGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCAATACTTTTTTGATATGGGTGATTGCTTGAACAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATACTCATTAAGTTAACTTTAGAAGTGATGCCTTGTGGTCGCACTCTATATGAGTGCGTGGATTGAAATC # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 27739-27377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYO010000006.1 Bacillus pumilus strain 7PB NODE_6_length_320115_cov_53.7731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27738 32 100.0 33 ................................ AACAATGCGCTTGCTTTTTGGACGTAAAATAAT 27673 32 100.0 35 ................................ TGTTTTAAATTTTCACCTCCGTTATGGAATCATCG 27606 32 93.8 33 ......................AA........ TCCCATTTTTAATAAAGTGAACAACTTATTATA 27541 32 96.9 35 ...................A............ TCAATGACTGAATAGATAATCGGGTTGTTTTCGTT 27474 32 96.9 34 ...........T.................... TTGAAATCTAGAATGTATTTTTCCATGATCATTT 27408 32 87.5 0 .....................C.AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTCTTGTCGCACTCTATATGAGTGCGTGGATTGAAATCATCTACTGCAAGCTTGTTTGCTTTTTGGAATGCCGTCGCACTCTATATGAGTGCGTGAATTTAAATAATGATTGTGTGACCATGCTCAGGTGCTTCTATGTGTCGCACTTTACATGAGTGTATGGATTGAGGTAGCTTGAAAGAAATGTTGACAGTTGAGCTTGATTTAGGGGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAAACTGTTGATGAAATAATGAACAAGTACCTTTAGAACAATAGTTTTTAATTAATAGGATTAAGAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTAATTAGAGGTGAAAACAAAATTCTATATAGAAACATGAGGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGTA # Right flank : GATTGTCTCTTAAACGGTTATGGCCACCTCAAATCCATCTTCTTACAACATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGATTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTAGACTTTGCTTCTAATCATGGTGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAACAGTA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 28301-28068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYO010000006.1 Bacillus pumilus strain 7PB NODE_6_length_320115_cov_53.7731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 28300 32 100.0 35 ................................ AGGCTTTACGCCAAACAATTCCTTGCTGTGCTCTT 28233 32 100.0 35 ................................ CATCTACTGCAAGCTTGTTTGCTTTTTGGAATGCC 28166 32 93.8 35 .......................A...T.... AATGATTGTGTGACCATGCTCAGGTGCTTCTATGT 28099 32 81.2 0 ........T..C.......TA........GG. | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.8 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTGGGTGAATCAAGACAAAACATCTCAAACATCCACAAAAAAGCACTTAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTTTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAGGCTCTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATGAAGGGGAAAATAAAATTCTATATTGAAATTTGTGGATTTTTACTATTATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : AGCTTGAAAGAAATGTTGACAGTTGAGCTTGATTTAGGGGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAAACTGTTGATGAAATAATGAACAAGTACCTTTAGAACAATAGTTTTTAATTAATAGGATTAAGAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTAATTAGAGGTGAAAACAAAATTCTATATAGAAACATGAGGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGTAGTCGCACTCTACATGAGTGCGTGGATTGAAATAACAATGCGCTTGCTTTTTGGACGTAAAATAATGTCGCACTCTACATGAGTGCGTGGATTGAAATTGTTTTAAATTTTCACCTCCGTTATGGAATCATCGGTCGCACTCTACATGAGTGCGTAAATTGAAATTCCCATT # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //