Array 1 974688-974238 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGH01000005.1 Escherichia coli strain CL38 CL38_BDMS190049489-1a_1.clean_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 974687 28 100.0 32 ............................ TCATCATAATGATATTCTGCCCCCCTTGTAAT 974627 28 100.0 32 ............................ CAAATGAAAAAGCCCCGATTATCGGGGCTATT 974567 28 100.0 32 ............................ TAAGCAGGACGAGTTACTTTTATCAAATCAGC 974507 28 100.0 32 ............................ CAATAATACCACCATCGGATTTTTCGTGGCGA 974447 28 100.0 32 ............................ CCATCCCCACTTTTAGCCATACCCTCTATTTT 974387 28 100.0 32 ............................ GTCAGAATCAAGCAAAAATAATCGTTTTGACC 974327 28 96.4 32 .............T.............. TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 974267 28 78.6 0 ......T...GT......A..AG..... | AT [974246] ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAGGCAGTACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGGTTATGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTATCAGTAAATAAAAGGGTATTTTCCAACAAATACCCTTAACTGATTGTTATCACTTATTTTTTATTTTAAAGTGCATC # Right flank : CTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGAGTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 984180-983372 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGH01000005.1 Escherichia coli strain CL38 CL38_BDMS190049489-1a_1.clean_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 984179 28 100.0 32 ............................ TTTGAAAGAAACTCAACCGTTTATTGTAAGGG 984119 28 100.0 32 ............................ TCTAAGTCGCGGCGTTCTGTTGCCAGCATGGT 984059 28 100.0 32 ............................ ATTAGATGTAGCAAGGGAAGAACGCAAAAAAG 983999 28 100.0 32 ............................ AATCTCCCCAACCCAAAACTTACAACCAGAAT 983939 28 100.0 32 ............................ ATTTTTATAAGTTCAGCTTTGCTTTTCGGATT 983879 28 100.0 32 ............................ TATGAAAAAGAGCATCACGAAGATTGTGAGCG 983819 28 100.0 32 ............................ TTTAACAATCATAGAACGATATACACTACTCT 983759 28 100.0 32 ............................ TCAATTAATCCATACACGTCGTGAAGCAATTA 983699 28 100.0 32 ............................ GTTATAGGCTACGGCGTTCCGTGTCATCCAGT 983639 28 100.0 32 ............................ ATCAAGGATGGCGCGTACCATTTCTGAGTTAA 983579 28 100.0 32 ............................ GCAAGTTATCGAAGGTGATAAAGCAGACAAAT 983519 28 100.0 32 ............................ TCCGGCATGGATGATGGAACAACCGCCAGACC 983459 28 100.0 32 ............................ TTATAACAGAACAGACGTATCAACAGGTTGGA 983399 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTAGATTTTTTAGCTGATACGCGCTCGATTCAAAATGCGGCTCGCAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTTAAAGACTTAAACAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATATTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTTATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTATTCTGTTTTTGTTATA # Right flank : GCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //