Array 1 65120-60503 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGP01000002.1 Moraxella catarrhalis strain COPD_M112 NODE_2_length_351998_cov_53.3377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 65119 28 100.0 32 ............................ TATTCATCTCTTCAATCTCTTTTATTATCTTC 65059 28 100.0 33 ............................ AGCTAGGGCGGTGCGTTCGAAGTCCGCCATGAT 64998 28 100.0 32 ............................ TATATTACCAGCAGATGGGTAGTATTGAAGCT 64938 28 100.0 32 ............................ AAATTCGTACCAGAAACGAAAATAGATTCTGG 64878 28 100.0 32 ............................ ACACGGCTATCATGATAATAGCAACTTTCACA 64818 28 100.0 32 ............................ GCTAACTTCGTTGTCTACTTGTTGGATAGTAG 64758 28 100.0 32 ............................ ACTTTCAATGGGTCAATAGCGTTAACGCCTTT 64698 28 100.0 32 ............................ TATTGCTTCTCTAACGATTAACATTATTATTC 64638 28 100.0 32 ............................ TAGTATTGTTTTAACGAAAAGTTTACTATCTG 64578 28 100.0 32 ............................ TAGACGACCAAGTGAGTTTGATAGAACTTTTA 64518 28 100.0 32 ............................ AACATGCTTGATGAGATCTCGCTCAATCTCTA 64458 28 100.0 32 ............................ CTTATTCCACTGTTTTTGTTACCGTAAGCGTA 64398 28 96.4 32 G........................... AAGATAAAGAAAGAGCAATGAGCGAATGTTTG 64338 28 100.0 33 ............................ ATAATAATTACTGCGAACATGAGATAGTCTCCT 64277 28 100.0 31 ............................ TTTTAGTTCAGCATGGATAAGTTTACTCATG 64218 28 100.0 32 ............................ AAAAGACATAAGGTTGAATGATGAGTGATGAT 64158 28 100.0 32 ............................ ACATTACTTGCAGATGGGTAGTAGTCTAACTC 64098 28 100.0 32 ............................ AAGGTATCAGCCCACCAATCGATATCTGAGCG 64038 28 96.4 33 .....T...................... ATAATTCCACCATTCGGTTTCTTTGTCTGAGTC 63977 28 100.0 32 ............................ TCTGGTTGGTATTTTACATCAAACCCTTTAAT 63917 28 100.0 32 ............................ TTTTAAACCTGCACAGAACAATGAAAGACCGA 63857 28 100.0 32 ............................ TGTCGCTCATTTGGCGGTGTCCACTCGCCCCG 63797 28 100.0 33 ............................ ATAAATTCACTGCACTATCTATCAAGTTTTGTA 63736 28 100.0 33 ............................ ATTCATTTTCTTGTAAATCTAAAAATATTTTGA 63675 28 100.0 33 ............................ GTTACAGCAAGTTTGACAACATCAAACGGCTCA 63614 28 100.0 32 ............................ TACTTGTCTATCCAAAATCAGTTTATACGCTG 63554 28 100.0 33 ............................ CCAAGACCCCGCTATGCCGCCTCAGCAGTTTTT 63493 28 100.0 32 ............................ ATCGTACTCCCGACGTTCTACCCAGGAATTAT 63433 28 100.0 32 ............................ TCTTTAAAGACTGCCCCTTTTTCACTTAACAG 63373 28 100.0 32 ............................ TTGTCTGCGTCTGGATGTCTATATTTGACTCT 63313 28 100.0 32 ............................ AGCATTTTCAGGCTTTGAAAAATATTCAAGAT 63253 28 100.0 34 ............................ CATTCTCTGTATTCGTTCATATCGCCCCCTTGAT 63191 28 100.0 32 ............................ TTAGGCAGTAAGATGTTACAGATAACATAAGC 63131 28 100.0 32 ............................ ATCTATATAATCTACAATGACTTTACCTGTGT 63071 28 100.0 32 ............................ AAAGTATTCATCCAGGGTGTCTACATGATTTA 63011 28 100.0 32 ............................ GTGATATTAACGCTTTGCAAGCTGATAAAAAT 62951 28 100.0 32 ............................ AATTATCATCCAGAAAAGATCTTCTTTAGAAA 62891 28 100.0 33 ............................ AGATGACCAACCACCGCTTGCCAAATTTTCCAA 62830 28 100.0 33 ............................ GTTATCAACGACAGCATATTTTTGGCGGTTGTA 62769 28 100.0 33 ............................ AGTCAAATTCACCACGCCAAACACCGCCATCAT 62708 28 100.0 32 ............................ ATTAACCCTAGCTCTATCGCCGTCAATTAGCA 62648 28 100.0 32 ............................ GTCATAATGTTTCATTACTGCAAGTACTAATC 62588 28 100.0 32 ............................ TTTTAGGCAAGGCGTGAGCCTTTTAGGCAAGG 62528 28 100.0 32 ............................ CATACTCGCTCATAAGCTTCAACCCCTGCTTA 62468 28 100.0 32 ............................ TGTAGTAGAAAGTTAACTACAGAACGCTAATT 62408 28 100.0 32 ............................ TAAACTCTACTACTCTGCTATCGTGATAATAG 62348 28 100.0 32 ............................ ACTTTCAAGCCTGCACAGAAAAGTGATAATCC 62288 28 100.0 32 ............................ TTTAGTGTTATGCTCATTTAATTCCTCAAAAA 62228 28 100.0 33 ............................ GTCATACTCCCTTCTTTCCAACCAAGTATTGTC 62167 28 100.0 32 ............................ CATAACAACGGATAAAATAATCTTTGTTGTTT 62107 28 100.0 32 ............................ ATAGTCTCATATGATATTTCTTGTTTTAGTTC 62047 28 100.0 32 ............................ CCGTACTTCACAACGTATTCTTTTGCTAAAAC 61987 28 100.0 32 ............................ AGTGGAATAGCTAATGCTAAAGCGTGTTTAAC 61927 28 100.0 33 ............................ AATCTGTATAACCATACAAAGCTTGATTTTGCA 61866 28 100.0 32 ............................ AACATCCGCAAGGATTGGGCGGATTGCACAAA 61806 28 100.0 32 ............................ TTTTCATTTCATTGTCAAGAGTTTCTTCAACC 61746 28 100.0 32 ............................ TTGATCCCTAGAGATTTTGTGCATCTCCATTA 61686 28 100.0 33 ............................ AACATAACTAGTCTCCTTAAATTTCAATTAGTA 61625 28 100.0 32 ............................ TAGATACTGCATAGGATTAAATTGTTTCATGT 61565 28 100.0 32 ............................ TAAACACCTGATTCTAGAATTGTAAAGCCACC 61505 28 100.0 32 ............................ CTTGCAGGGGGCTGAAAATGCTGATATATGTT 61445 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 61385 28 100.0 31 ............................ TTGACCCCCGCCCACTAGCCCCAGTTGTGAG 61326 28 100.0 32 ............................ ATGACAGAGAACGGTTAAGTACAACGGCAATC 61266 28 100.0 32 ............................ TTGATACACAAAACATGTCTATTGTACTTTCT 61206 28 100.0 32 ............................ TTGTATCTGTGTCAGATTTGAGTGCGTGGCTA 61146 28 100.0 32 ............................ TTTCGCAATAAGTTTGGCGAATATATCTCACT 61086 28 100.0 32 ............................ AGTATAGTGATTTTCGCCATTGACACACTGGA 61026 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 60950 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 60890 28 96.4 32 .............T.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 60830 28 96.4 32 .............T.............. AGCCTGAGCTTGTCGCTGATGTGCTTAATCAC 60770 28 96.4 32 .............T.............. GACGCAAAGATTGCAATCAGATAAAACAAAAA 60710 28 92.9 32 ...........TG............... TAATCTTGAACCTATTTCATAAATAAACGGCT 60650 28 100.0 33 ............................ AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 60589 28 96.4 31 .............T.............. CTTACAATTTTTTTGTCAAAATGCTGCATAA 60530 28 92.9 0 .............T....T......... | ========== ====== ====== ====== ============================ ================================================ ================== 77 28 99.5 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGGAAAATTACTGTGGTATTGGCGATCGGAATGTTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //